Package evaluation to test EMIRT on Julia 1.14.0-DEV.1613 (8dab3f0623*) started at 2026-01-25T17:43:21.383


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 10.0s


################################################################################
# Installation
#

Installing EMIRT...
   Resolving package versions...
   Installed HDF5 ─ v0.13.6
    Updating `~/.julia/environments/v1.14/Project.toml`
  [8acf8dda] + EMIRT v0.7.0
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [a74b3585] + Blosc v0.7.3
⌅ [3da002f7] + ColorTypes v0.7.5
⌅ [5ae59095] + Colors v0.9.5
  [8acf8dda] + EMIRT v0.7.0
  [5789e2e9] + FileIO v1.17.1
⌅ [53c48c17] + FixedPointNumbers v0.5.3
⌅ [f67ccb44] + HDF5 v0.13.6
  [692b3bcd] + JLLWrappers v1.7.1
  [3da0fdf6] + MPIPreferences v0.1.11
  [21216c6a] + Preferences v1.5.1
⌅ [189a3867] + Reexport v0.2.0
  [ae029012] + Requires v1.3.1
  [0b7ba130] + Blosc_jll v1.21.7+0
⌅ [0234f1f7] + HDF5_jll v1.14.6+0
  [e33a78d0] + Hwloc_jll v2.12.2+0
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [5ced341a] + Lz4_jll v1.10.1+0
  [7cb0a576] + MPICH_jll v4.3.2+0
  [f1f71cc9] + MPItrampoline_jll v5.5.4+0
  [9237b28f] + MicrosoftMPI_jll v10.1.4+3
  [fe0851c0] + OpenMPI_jll v5.0.9+0
⌅ [02c8fc9c] + XML2_jll v2.13.9+0
  [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0
  [477f73a3] + libaec_jll v1.1.5+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v1.0.0
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.14.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [f489334b] + StyledStrings v1.13.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.18.0+0
  [e37daf67] + LibGit2_jll v1.9.2+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.12.2
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [efcefdf7] + PCRE2_jll v10.47.0+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850ede] + nghttp2_jll v1.68.0+1
  [3f19e933] + p7zip_jll v17.7.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
    Building HDF5 → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0713cbabdf855852dfab3ce6447c87145f3d9ea8/build.log`

Installation completed after 15.2s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...
Precompiling packages...
   3344.0 ms  ✓ FixedPointNumbers
   4092.1 ms  ✓ ColorTypes
   4102.2 ms  ✓ Colors
   6233.0 ms  ✓ EMIRT
  4 dependencies successfully precompiled in 18 seconds. 53 already precompiled.

Precompilation completed after 42.69s


################################################################################
# Testing
#

     Testing EMIRT
      Status `/tmp/jl_jzUYJq/Project.toml`
⌅ [5ae59095] Colors v0.9.5
  [8acf8dda] EMIRT v0.7.0
  [5789e2e9] FileIO v1.17.1
⌅ [53c48c17] FixedPointNumbers v0.5.3
⌅ [f67ccb44] HDF5 v0.13.6
  [8ba89e20] Distributed v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_jzUYJq/Manifest.toml`
  [a74b3585] Blosc v0.7.3
⌅ [3da002f7] ColorTypes v0.7.5
⌅ [5ae59095] Colors v0.9.5
  [8acf8dda] EMIRT v0.7.0
  [5789e2e9] FileIO v1.17.1
⌅ [53c48c17] FixedPointNumbers v0.5.3
⌅ [f67ccb44] HDF5 v0.13.6
  [692b3bcd] JLLWrappers v1.7.1
  [3da0fdf6] MPIPreferences v0.1.11
  [21216c6a] Preferences v1.5.1
⌅ [189a3867] Reexport v0.2.0
  [ae029012] Requires v1.3.1
  [0b7ba130] Blosc_jll v1.21.7+0
⌅ [0234f1f7] HDF5_jll v1.14.6+0
  [e33a78d0] Hwloc_jll v2.12.2+0
  [94ce4f54] Libiconv_jll v1.18.0+0
  [5ced341a] Lz4_jll v1.10.1+0
  [7cb0a576] MPICH_jll v4.3.2+0
  [f1f71cc9] MPItrampoline_jll v5.5.4+0
  [9237b28f] MicrosoftMPI_jll v10.1.4+3
  [fe0851c0] OpenMPI_jll v5.0.9+0
⌅ [02c8fc9c] XML2_jll v2.13.9+0
  [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0
  [477f73a3] libaec_jll v1.1.5+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v1.0.0
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.14.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [f489334b] StyledStrings v1.13.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.18.0+0
  [e37daf67] LibGit2_jll v1.9.2+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.12.2
  [458c3c95] OpenSSL_jll v3.5.4+0
  [efcefdf7] PCRE2_jll v10.47.0+0
  [83775a58] Zlib_jll v1.3.1+2
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850ede] nghttp2_jll v1.68.0+1
  [3f19e933] p7zip_jll v17.7.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
┌ Warning: The call to compilecache failed to create a usable precompiled cache file for EMIRT [8acf8dda-514d-5c36-9488-7e3496cf596e]
│   exception = Required dependency Base.PkgId(Base.UUID("5789e2e9-d7fb-5bc7-8068-2c6fae9b9549"), "FileIO") failed to load from a cache file.
└ @ Base loading.jl:2939
Test Summary: | Pass  Total   Time
test IO       |    6      6  14.0s
reading file: /home/pkgeval/.julia/packages/EMIRT/C3RK2/test/../assets/aff.h5 ......done :)
reading file: /home/pkgeval/.julia/packages/EMIRT/C3RK2/test/../assets/lbl.h5 ......done :)
judec = Dict{Symbol, Float32}(:VIFSs => 0.652092, :ri => 0.9090549, :VIm => 0.013707907, :VIFS => 0.7800202, :rem => 0.00040644547, :VI => 0.2534154, :res => 0.09053864, :rfm => 0.99934626, :rf => 0.9318043, :VIS => -0.2534154, :VIFSm => 0.9703931, :re => 0.09094509, :rfs => 0.8728142, :ris => 0.2877324, :VIs => 0.2397075, :rim => 0.6213225)
  0.003522 seconds (25.74 k allocations: 415.250 KiB)
ecd = Dict{Symbol, Float32}(:VIFSs => 1.0000002, :ri => 1.0, :VIm => 0.0, :VIFS => 1.0000002, :rem => 0.0, :VI => -1.7881393f-7, :res => 0.0, :rfm => 1.0, :rf => 1.0, :VIS => 1.7881393f-7, :VIFSm => 1.0000002, :re => 0.0, :rfs => 1.0, :ris => 0.28813884, :VIs => 0.0, :rim => 0.71186113)
  0.282724 seconds (1.06 M allocations: 22.346 MiB)
ecd = Dict{Symbol, Float32}(:VIFSs => 0.045672167, :ri => 0.28817847, :VIm => 0.0, :VIFS => 0.08735393, :rem => 0.0, :VI => 9.672652, :res => 0.7118215, :rfm => 1.0, :rf => 0.00011138609, :VIS => -9.672652, :VIFSm => 0.9998097, :re => 0.7118215, :rfs => 5.569615f-5, :ris => 0.28813884, :VIs => 9.672761, :rim => 3.9647926f-5)
Test Summary: | Pass  Total  Time
test evaluate |    2      2  8.6s
test segmentation downsampling
create random segmentation for tests
test creating fake mst ...
test relabel_seg ....
  3.312990 seconds (167.16 k allocations: 139.871 MiB, 11.62% gc time, 18.20% compilation time)
test segid1N! ...
test modified serial version ...
 10.381792 seconds (55.33 k allocations: 561.302 MiB, 7.92% gc time, 1.70% compilation time)
test modified serial version ...
  8.524473 seconds (43 allocations: 558.025 MiB, 4.22% gc time)
test mask singletons ...
test removing singletons by masking ...
  2.789246 seconds (17.09 M allocations: 327.741 MiB, 15.19% gc time, 7.92% compilation time)
  1.530283 seconds (17.04 M allocations: 325.271 MiB, 1.56% gc time, 2.28% compilation time)
Test Summary:      | Pass  Total   Time
test segmentations |    2      2  31.5s
transform affinitymap to edge list...
  0.199634 seconds (3 allocations: 8.766 MiB, 32.45% gc time)
  1.397767 seconds (579.21 k allocations: 73.202 MiB, 4.63% gc time, 84.44% compilation time)
segment affinity map using connectivity analysis ...
  0.028487 seconds (35 allocations: 6.033 MiB)
transform to uniform distribution ...
map to uniform distribution...get the permutation by sorting......  0.123610 seconds (6 allocations: 9.000 MiB)
done :)
done!
  1.294344 seconds (613.73 k allocations: 65.636 MiB, 89.24% compilation time)
exchange x and z axis of affinity map...
exchange x and z of affinity map
  0.365250 seconds (230.85 k allocations: 16.868 MiB, 99.22% compilation time)
Test Summary:    | Total  Time
test affinitymap |     0  3.2s
     Testing EMIRT tests passed 

Testing completed after 94.45s

PkgEval succeeded after 172.62s