Package evaluation to test PhyNEST on Julia 1.14.0-DEV.1601 (79ea5eb99c*) started at 2026-01-25T00:07:32.067 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 10.6s ################################################################################ # Installation # Installing PhyNEST... Resolving package versions... Installed Libuuid_jll ───────────────── v2.41.2+0 Installed HarfBuzz_jll ──────────────── v8.5.1+0 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed InlineStrings ─────────────── v1.4.5 Installed Libtiff_jll ───────────────── v4.7.2+0 Installed Cairo_jll ─────────────────── v1.18.5+0 Installed Functors ──────────────────── v0.3.0 Installed Optim ─────────────────────── v1.13.3 Installed Xorg_libXinerama_jll ──────── v1.1.6+0 Installed Graphite2_jll ─────────────── v1.3.15+0 Installed OrderedCollections ────────── v1.8.1 Installed SentinelArrays ────────────── v1.4.9 Installed Wayland_protocols_jll ─────── v1.44.0+0 Installed Fontconfig_jll ────────────── v2.17.1+0 Installed NaNMath ───────────────────── v1.1.3 Installed FileIO ────────────────────── v1.17.1 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed libsass_jll ───────────────── v3.6.6+0 Installed QuadGK ────────────────────── v2.11.2 Installed Graphics ──────────────────── v1.1.3 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed LZO_jll ───────────────────── v2.10.3+0 Installed EnumX ─────────────────────── v1.0.6 Installed Reexport ──────────────────── v1.2.2 Installed Tables ────────────────────── v1.12.1 Installed NLSolversBase ─────────────── v7.10.0 Installed Librsvg_jll ───────────────── v2.54.7+0 Installed Preferences ───────────────── v1.5.1 Installed LERC_jll ──────────────────── v4.0.1+0 Installed Missings ──────────────────── v1.2.0 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed TableTraits ───────────────── v1.0.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed Crayons ───────────────────── v4.1.1 Installed SortingAlgorithms ─────────── v1.2.2 Installed EpollShim_jll ─────────────── v0.0.20230411+1 Installed ADTypes ───────────────────── v1.21.0 Installed OpenSSH_jll ───────────────── v10.2.1+0 Installed MacroTools ────────────────── v0.5.16 Installed DataStructures ────────────── v0.18.22 Installed DiffResults ───────────────── v1.1.0 Installed FillArrays ────────────────── v1.16.0 Installed AbstractTrees ─────────────── v0.4.5 Installed Sass ──────────────────────── v0.2.0 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed CodecZlib ─────────────────── v0.7.8 Installed DelimitedFiles ────────────── v1.9.1 Installed Observables ───────────────── v0.5.5 Installed StatsBase ─────────────────── v0.33.21 Installed Xorg_libXdamage_jll ───────── v1.1.6+0 Installed MethodAnalysis ────────────── v1.0.0 Installed Xorg_libXfixes_jll ────────── v6.0.2+0 Installed CEnum ─────────────────────── v0.5.0 Installed RoundingIntegers ──────────── v1.1.0 Installed DataValueInterfaces ───────── v1.0.0 Installed ArrayInterface ────────────── v7.22.0 Installed Cairo ─────────────────────── v1.1.1 Installed CommonSubexpressions ──────── v0.3.1 Installed Libffi_jll ────────────────── v3.4.7+0 Installed Xorg_libXcursor_jll ───────── v1.2.4+0 Installed Expat_jll ─────────────────── v2.7.3+0 Installed Pixman_jll ────────────────── v0.44.2+0 Installed IrrationalConstants ───────── v0.2.6 Installed libpng_jll ────────────────── v1.6.54+0 Installed BitFlags ──────────────────── v0.1.9 Installed Scratch ───────────────────── v1.3.0 Installed Setfield ──────────────────── v1.1.2 Installed BenchmarkTools ────────────── v1.6.3 Installed PooledArrays ──────────────── v1.4.3 Installed GTK4_jll ──────────────────── v4.18.6+0 Installed Graphene_jll ──────────────── v1.10.8+0 Installed LeftChildRightSiblingTrees ── v0.2.1 Installed IOCapture ─────────────────── v0.2.5 Installed PDMats ────────────────────── v0.11.35 Installed FASTX ─────────────────────── v2.1.7 Installed WorkerUtilities ───────────── v1.6.1 Installed DocStringExtensions ───────── v0.9.5 Installed ForwardDiff ───────────────── v1.3.1 Installed adwaita_icon_theme_jll ────── v43.0.1+0 Installed BioSequences ──────────────── v3.5.1 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed MathOptInterface ──────────── v1.48.0 Installed DifferentiationInterface ──── v0.7.14 Installed StringViews ───────────────── v1.3.7 Installed AliasTables ───────────────── v1.1.3 Installed Combinatorics ─────────────── v1.1.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed StatsModels ───────────────── v0.6.33 Installed ShiftedArrays ─────────────── v2.0.0 Installed SIMD ──────────────────────── v3.7.2 Installed DataAPI ───────────────────── v1.16.0 Installed Git_LFS_jll ───────────────── v3.7.0+0 Installed InvertedIndices ───────────── v1.3.1 Installed Xorg_libXi_jll ────────────── v1.8.3+0 Installed Wayland_jll ───────────────── v1.24.0+0 Installed Twiddle ───────────────────── v1.1.2 Installed GtkObservables ────────────── v2.2.1 Installed Colors ────────────────────── v0.13.1 Installed Xorg_libxkbfile_jll ───────── v1.1.3+0 Installed StaticArraysCore ──────────── v1.4.4 Installed StaticArrays ──────────────── v1.9.16 Installed Libglvnd_jll ──────────────── v1.7.1+1 Installed ColorTypes ────────────────── v0.12.1 Installed Xorg_xkbcomp_jll ──────────── v1.4.7+0 Installed Requires ──────────────────── v1.3.1 Installed Documenter ────────────────── v0.27.25 Installed StringManipulation ────────── v0.4.2 Installed Glib_jll ──────────────────── v2.86.2+0 Installed LogExpFunctions ───────────── v0.3.29 Installed Git_jll ───────────────────── v2.52.0+0 Installed DiffRules ─────────────────── v1.15.1 Installed JSON ──────────────────────── v0.21.4 Installed Parsers ───────────────────── v2.8.3 Installed Rmath ─────────────────────── v0.9.0 Installed CSV ───────────────────────── v0.10.15 Installed FiniteDiff ────────────────── v2.29.0 Installed DocumenterTools ───────────── v0.1.21 Installed PrettyTables ──────────────── v3.1.2 Installed Distributions ─────────────── v0.25.123 Installed StatsFuns ─────────────────── v1.5.2 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed Xorg_xkeyboard_config_jll ─── v2.44.0+0 Installed PhyloNetworks ─────────────── v0.15.3 Installed BioGenerics ───────────────── v0.1.5 Installed DataFrames ────────────────── v1.8.1 Installed MutableArithmetics ────────── v1.6.7 Installed XZ_jll ────────────────────── v5.8.2+0 Installed WeakRefStrings ────────────── v1.4.2 Installed JLLWrappers ───────────────── v1.7.1 Installed StructTypes ───────────────── v1.11.0 Installed Pango_jll ─────────────────── v1.57.0+0 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed JpegTurbo_jll ─────────────── v3.1.4+0 Installed FilePathsBase ─────────────── v0.9.24 Installed Adapt ─────────────────────── v4.4.0 Installed NLopt ─────────────────────── v0.6.5 Installed Libmount_jll ──────────────── v2.41.2+0 Installed ConstructionBase ──────────── v1.6.0 Installed HypergeometricFunctions ───── v0.3.28 Installed GLM ───────────────────────── v1.8.3 Installed FlameGraphs ───────────────── v1.1.0 Installed Xorg_libX11_jll ───────────── v1.8.12+0 Installed Suppressor ────────────────── v0.2.8 Installed PositiveFactorizations ────── v0.2.4 Installed TranscodingStreams ────────── v0.11.3 Installed Statistics ────────────────── v1.11.1 Installed Gumbo_jll ─────────────────── v0.10.2+0 Installed Compat ────────────────────── v4.18.1 Installed xkbcommon_jll ─────────────── v1.13.0+0 Installed StatsAPI ──────────────────── v1.8.0 Installed CodecBzip2 ────────────────── v0.8.5 Installed PrecompileTools ───────────── v1.3.3 Installed Libepoxy_jll ──────────────── v1.5.11+0 Installed GettextRuntime_jll ────────── v0.22.4+0 Installed FriBidi_jll ───────────────── v1.0.17+0 Installed ProfileView ───────────────── v1.10.2 Installed JSON3 ─────────────────────── v1.14.3 Installed BioSymbols ────────────────── v5.2.0 Installed Xorg_libXrender_jll ───────── v0.9.12+0 Installed XML2_jll ──────────────────── v2.13.9+0 Installed PtrArrays ─────────────────── v1.3.0 Installed hicolor_icon_theme_jll ────── v0.18.0+0 Installed iso_codes_jll ─────────────── v4.18.0+0 Installed Git ───────────────────────── v1.5.0 Installed FixedPointNumbers ─────────── v0.8.5 Installed SpecialFunctions ──────────── v2.6.1 Installed IntervalSets ──────────────── v0.7.13 Installed gdk_pixbuf_jll ────────────── v2.42.13+0 Installed Gtk4 ──────────────────────── v0.7.11 Installed FreeType2_jll ─────────────── v2.13.4+0 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed Xorg_libXext_jll ──────────── v1.3.7+0 Installed Gumbo ─────────────────────── v0.8.3 Installed LineSearches ──────────────── v7.5.1 Installed IndirectArrays ────────────── v1.0.0 Installed Xorg_libXrandr_jll ────────── v1.5.5+0 Installed Automa ────────────────────── v1.1.0 Installed MathProgBase ──────────────── v0.7.8 Installed PhyNEST ───────────────────── v0.1.12 Installed NLopt_jll ─────────────────── v2.10.0+0 Installed ANSIColoredPrinters ───────── v0.0.1 Installing 60 artifacts Installed artifact LZO 208.9 KiB Installed artifact Xorg_libXdamage 50.0 KiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact NLopt 322.7 KiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Bzip2 503.5 KiB Installed artifact Libffi 44.2 KiB Installed artifact xkbcommon 298.7 KiB Installed artifact Xorg_libXrandr 354.5 KiB Installed artifact libpng 328.7 KiB Installed artifact Wayland_protocols 185.1 KiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact Libiconv 1.9 MiB Installed artifact Xorg_libxkbfile 486.7 KiB Installed artifact XZ 1.5 MiB Installed artifact Graphite2 120.2 KiB Installed artifact Libglvnd 833.5 KiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact GettextRuntime 543.0 KiB Installed artifact Expat 283.3 KiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Git_LFS 9.6 MiB Installed artifact HarfBuzz 1.7 MiB Installed artifact LERC 272.9 KiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact Graphene 223.2 KiB Installed artifact Libtiff 2.3 MiB Installed artifact FriBidi 78.9 KiB Installed artifact Pango 2.0 MiB Installed artifact Xorg_libXinerama 50.1 KiB Installed artifact Pixman 372.2 KiB Installed artifact Wayland 390.6 KiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact Cairo 2.2 MiB Installed artifact FreeType2 1.5 MiB Installed artifact Rmath 121.9 KiB Installed artifact Glib 7.7 MiB Installed artifact OpenSSH 4.3 MiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact Fontconfig 984.8 KiB Installed artifact Libepoxy 504.4 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact hicolor_icon_theme 13.2 KiB Installed artifact gdk_pixbuf 943.6 KiB Installed artifact adwaita_icon_theme 5.0 MiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact Xorg_libXfixes 59.0 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Gumbo 703.8 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact iso_codes 7.5 MiB Installed artifact GTK4 14.1 MiB Installed artifact XML2 2.5 MiB Installed artifact Libuuid 3.7 MiB Installed artifact Libmount 6.5 MiB Installed artifact Librsvg 9.3 MiB Installed artifact libsass 8.9 MiB Installed artifact Git 49.3 MiB Updating `~/.julia/environments/v1.14/Project.toml` [115de871] + PhyNEST v0.1.12 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [a4c015fc] + ANSIColoredPrinters v0.0.1 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [67c07d97] + Automa v1.1.0 [6e4b80f9] + BenchmarkTools v1.6.3 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.5.1 [3c28c6f8] + BioSymbols v5.2.0 [d1d4a3ce] + BitFlags v0.1.9 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.15 [159f3aea] + Cairo v1.1.1 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.1.0 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.14 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 ⌅ [e30172f5] + Documenter v0.27.25 [35a29f4d] + DocumenterTools v0.1.21 [4e289a0a] + EnumX v1.0.6 [c2308a5c] + FASTX v2.1.7 [5789e2e9] + FileIO v1.17.1 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.29.0 [53c48c17] + FixedPointNumbers v0.8.5 [08572546] + FlameGraphs v1.1.0 [f6369f11] + ForwardDiff v1.3.1 ⌅ [d9f16b24] + Functors v0.3.0 ⌃ [38e38edf] + GLM v1.8.3 [d7ba0133] + Git v1.5.0 [a2bd30eb] + Graphics v1.1.3 [9db2cae5] + Gtk4 v0.7.11 [8710efd8] + GtkObservables v2.2.1 [708ec375] + Gumbo v0.8.3 [34004b35] + HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] + IOCapture v0.2.5 [9b13fd28] + IndirectArrays v1.0.0 [842dd82b] + InlineStrings v1.4.5 [8197267c] + IntervalSets v0.7.13 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] + LaTeXStrings v1.4.0 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1 ⌃ [d3d80556] + LineSearches v7.5.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [b8f27783] + MathOptInterface v1.48.0 [fdba3010] + MathProgBase v0.7.8 [85b6ec6f] + MethodAnalysis v1.0.0 [e1d29d7a] + Missings v1.2.0 [d8a4904e] + MutableArithmetics v1.6.7 ⌅ [d41bc354] + NLSolversBase v7.10.0 ⌅ [76087f3c] + NLopt v0.6.5 [77ba4419] + NaNMath v1.1.3 [510215fc] + Observables v0.5.5 ⌅ [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 ⌃ [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [115de871] + PhyNEST v0.1.12 ⌅ [33ad39ac] + PhyloNetworks v0.15.3 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [c46f51b8] + ProfileView v1.10.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [d5f540fe] + RoundingIntegers v1.1.0 [fdea26ae] + SIMD v3.7.2 [322a6be2] + Sass v0.2.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.2 ⌅ [3eaba693] + StatsModels v0.6.33 [892a3eda] + StringManipulation v0.4.2 [354b36f9] + StringViews v1.3.7 [856f2bd8] + StructTypes v1.11.0 [fd094767] + Suppressor v0.2.8 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [7200193e] + Twiddle v1.1.2 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.5+0 [2702e6a9] + EpollShim_jll v0.0.20230411+1 [2e619515] + Expat_jll v2.7.3+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [6ebb71f1] + GTK4_jll v4.18.6+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.52.0+0 [7746bdde] + Glib_jll v2.86.2+0 [75302f13] + Graphene_jll v1.10.8+0 [3b182d85] + Graphite2_jll v1.3.15+0 [528830af] + Gumbo_jll v0.10.2+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [aacddb02] + JpegTurbo_jll v3.1.4+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 [42c93a91] + Libepoxy_jll v1.5.11+0 ⌅ [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.2+0 [925c91fb] + Librsvg_jll v2.54.7+0 [89763e89] + Libtiff_jll v4.7.2+0 [38a345b3] + Libuuid_jll v2.41.2+0 [079eb43e] + NLopt_jll v2.10.0+0 [9bd350c2] + OpenSSH_jll v10.2.1+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [36c8627f] + Pango_jll v1.57.0+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [f50d1b31] + Rmath_jll v0.5.1+0 [a2964d1f] + Wayland_jll v1.24.0+0 [2381bf8a] + Wayland_protocols_jll v1.44.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.2+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [935fb764] + Xorg_libXcursor_jll v1.2.4+0 [0aeada51] + Xorg_libXdamage_jll v1.1.6+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] + Xorg_libXi_jll v1.8.3+0 [d1454406] + Xorg_libXinerama_jll v1.1.6+0 [ec84b674] + Xorg_libXrandr_jll v1.5.5+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [cc61e674] + Xorg_libxkbfile_jll v1.1.3+0 [35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [b437f822] + adwaita_icon_theme_jll v43.0.1+0 [da03df04] + gdk_pixbuf_jll v2.42.13+0 [059c91fe] + hicolor_icon_theme_jll v0.18.0+0 [bf975903] + iso_codes_jll v4.18.0+0 [b53b4c65] + libpng_jll v1.6.54+0 [47bcb7c8] + libsass_jll v3.6.6+0 [d8fb68d0] + xkbcommon_jll v1.13.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 31.2s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4557.6 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling packages... 4514.3 ms ✓ MacroTools 1629.4 ms ✓ InlineStrings 808.4 ms ✓ Reexport 1114.4 ms ✓ ConstructionBase 2027.5 ms ✓ IrrationalConstants 793.3 ms ✓ DataValueInterfaces 926.6 ms ✓ StatsAPI 1022.2 ms ✓ Observables 832.0 ms ✓ Twiddle 1018.8 ms ✓ IntervalSets 864.3 ms ✓ CEnum 979.0 ms ✓ Functors 2030.2 ms ✓ Combinatorics 1074.2 ms ✓ StringViews 1274.0 ms ✓ TranscodingStreams 855.8 ms ✓ LaTeXStrings 1078.1 ms ✓ Statistics 952.8 ms ✓ StaticArraysCore 810.4 ms ✓ Suppressor 836.1 ms ✓ PtrArrays 1065.6 ms ✓ ANSIColoredPrinters 990.8 ms ✓ PositiveFactorizations 883.9 ms ✓ DataAPI 853.6 ms ✓ InvertedIndices 872.0 ms ✓ BitFlags 904.7 ms ✓ ShiftedArrays 1135.6 ms ✓ AbstractTrees 871.9 ms ✓ EnumX 1012.9 ms ✓ WorkerUtilities 2233.3 ms ✓ FillArrays 818.6 ms ✓ IndirectArrays 862.8 ms ✓ RoundingIntegers 1243.2 ms ✓ OrderedCollections 1339.2 ms ✓ ADTypes 1097.7 ms ✓ DocStringExtensions 805.9 ms ✓ IteratorInterfaceExtensions 1792.9 ms ✓ Crayons 860.8 ms ✓ IOCapture 990.2 ms ✓ DelimitedFiles 1026.3 ms ✓ NaNMath 1162.6 ms ✓ Requires 1809.3 ms ✓ PDMats 2111.3 ms ✓ MathProgBase 910.6 ms ✓ Scratch 1998.1 ms ✓ SentinelArrays 1582.9 ms ✓ StructTypes 1135.3 ms ✓ Compat 1202.7 ms ✓ Preferences 11631.6 ms ✓ MutableArithmetics 1837.2 ms ✓ CommonSubexpressions 821.7 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 790.5 ms ✓ IntervalSets → IntervalSetsRandomExt 770.5 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 934.0 ms ✓ BioGenerics 963.7 ms ✓ CodecZlib 1277.8 ms ✓ Statistics → SparseArraysExt 3804.0 ms ✓ FixedPointNumbers 782.7 ms ✓ IntervalSets → IntervalSetsStatisticsExt 859.5 ms ✓ DiffResults 975.5 ms ✓ AliasTables 998.4 ms ✓ Missings 1047.4 ms ✓ PooledArrays 869.7 ms ✓ LeftChildRightSiblingTrees 1076.4 ms ✓ MethodAnalysis 1486.3 ms ✓ FillArrays → FillArraysSparseArraysExt 931.0 ms ✓ FillArrays → FillArraysStatisticsExt 814.8 ms ✓ ADTypes → ADTypesConstructionBaseExt 1844.7 ms ✓ DifferentiationInterface 1329.5 ms ✓ LogExpFunctions 768.2 ms ✓ TableTraits 946.4 ms ✓ Adapt 9099.2 ms ✓ FileIO 1397.9 ms ✓ FillArrays → FillArraysPDMatsExt 840.8 ms ✓ Compat → CompatLinearAlgebraExt 922.1 ms ✓ PrecompileTools 1313.0 ms ✓ JLLWrappers 3128.1 ms ✓ Setfield 2844.8 ms ✓ ColorTypes 1566.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 1832.9 ms ✓ Tables 1138.1 ms ✓ ArrayInterface 1347.6 ms ✓ Adapt → AdaptSparseArraysExt 2025.7 ms ✓ FilePathsBase 3766.6 ms ✓ DataStructures 2493.9 ms ✓ BioSymbols 3116.7 ms ✓ StringManipulation 14178.1 ms ✓ SIMD 14208.6 ms ✓ StaticArrays 16306.6 ms ✓ Parsers 1429.4 ms ✓ Libffi_jll 1370.6 ms ✓ LZO_jll 1446.3 ms ✓ Bzip2_jll 1480.2 ms ✓ XZ_jll 1402.6 ms ✓ NLopt_jll 1452.7 ms ✓ Rmath_jll 1463.9 ms ✓ OpenSpecFun_jll 1186.6 ms ✓ Xorg_xtrans_jll 1392.7 ms ✓ libpng_jll 1353.7 ms ✓ iso_codes_jll 1482.1 ms ✓ EpollShim_jll 1759.9 ms ✓ Wayland_protocols_jll 2082.9 ms ✓ Libmount_jll 1676.2 ms ✓ Libuuid_jll 1488.0 ms ✓ FriBidi_jll 1391.6 ms ✓ LERC_jll 1379.0 ms ✓ Git_LFS_jll 1489.3 ms ✓ libsass_jll 1372.1 ms ✓ Gumbo_jll 1489.9 ms ✓ Xorg_libXau_jll 1539.9 ms ✓ OpenSSH_jll 1341.0 ms ✓ hicolor_icon_theme_jll 1387.4 ms ✓ Graphite2_jll 1420.3 ms ✓ LLVMOpenMP_jll 1411.9 ms ✓ Libiconv_jll 1399.0 ms ✓ Xorg_libXdmcp_jll 1395.3 ms ✓ Expat_jll 1422.6 ms ✓ JpegTurbo_jll 1282.5 ms ✓ ColorTypes → StyledStringsExt 7908.3 ms ✓ Colors 823.6 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1285.1 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 2696.2 ms ✓ FilePathsBase → FilePathsBaseTestExt 945.1 ms ✓ FilePathsBase → FilePathsBaseMmapExt 1532.7 ms ✓ SortingAlgorithms 2636.3 ms ✓ QuadGK 9459.3 ms ✓ BioSequences 39009.7 ms ✓ PrettyTables 17919.7 ms ✓ Automa 1466.3 ms ✓ StaticArrays → StaticArraysStatisticsExt 1406.3 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1532.1 ms ✓ FillArrays → FillArraysStaticArraysExt 1447.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1435.0 ms ✓ Adapt → AdaptStaticArraysExt 13924.9 ms ✓ JSON3 3770.8 ms ✓ JSON 1007.2 ms ✓ InlineStrings → ParsersExt 1043.8 ms ✓ CodecBzip2 1378.6 ms ✓ FreeType2_jll 1632.9 ms ✓ Rmath 5184.2 ms ✓ SpecialFunctions 2057.4 ms ✓ Sass 1579.5 ms ✓ Gumbo 1692.1 ms ✓ adwaita_icon_theme_jll 1811.0 ms ✓ Pixman_jll 1940.3 ms ✓ XML2_jll 1471.5 ms ✓ GettextRuntime_jll 1549.2 ms ✓ Xorg_libxcb_jll 1543.7 ms ✓ Git_jll 1437.2 ms ✓ Wayland_jll 1498.4 ms ✓ Libtiff_jll 1377.3 ms ✓ Graphics 10597.2 ms ✓ FlameGraphs 1323.4 ms ✓ FiniteDiff 4838.7 ms ✓ StatsBase 83155.7 ms ✓ DataFrames 18719.3 ms ✓ FASTX 9016.4 ms ✓ Documenter 2973.6 ms ✓ BenchmarkTools 2535.2 ms ✓ WeakRefStrings 1565.0 ms ✓ Fontconfig_jll 2230.2 ms ✓ HypergeometricFunctions 1312.7 ms ✓ DiffRules 1451.6 ms ✓ Glib_jll 1446.6 ms ✓ Xorg_libX11_jll 1035.3 ms ✓ Git 1470.6 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1297.7 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 993.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 2008.0 ms ✓ FASTX → BioSequencesExt 26307.8 ms ✓ CSV 2843.0 ms ✓ StatsFuns 6711.6 ms ✓ ForwardDiff 2029.8 ms ✓ Graphene_jll 1427.0 ms ✓ Xorg_libXfixes_jll 1574.0 ms ✓ Xorg_libXrender_jll 1410.6 ms ✓ Xorg_libXext_jll 1558.5 ms ✓ Xorg_libxkbfile_jll 1530.5 ms ✓ gdk_pixbuf_jll 4067.8 ms ✓ DocumenterTools 5001.6 ms ✓ StatsModels 9891.9 ms ✓ Distributions 1710.6 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1394.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 77862.8 ms ✓ MathOptInterface 1410.0 ms ✓ Xorg_libXdamage_jll 1415.2 ms ✓ Xorg_libXcursor_jll 1534.1 ms ✓ Xorg_libXrandr_jll 1408.5 ms ✓ Xorg_libXinerama_jll 1407.4 ms ✓ Xorg_libXi_jll 1485.3 ms ✓ Cairo_jll 1421.2 ms ✓ Libglvnd_jll 1942.3 ms ✓ Xorg_xkbcomp_jll 6419.2 ms ✓ GLM 3673.5 ms ✓ Distributions → DistributionsTestExt 1866.3 ms ✓ NLSolversBase 7317.0 ms ✓ NLopt 1531.3 ms ✓ HarfBuzz_jll 1337.4 ms ✓ Libepoxy_jll 1110.2 ms ✓ Xorg_xkeyboard_config_jll 1870.1 ms ✓ LineSearches 29351.2 ms ✓ PhyloNetworks 1535.6 ms ✓ Pango_jll 1530.2 ms ✓ xkbcommon_jll 7369.0 ms ✓ Optim 2893.0 ms ✓ Cairo 1687.2 ms ✓ Librsvg_jll 1835.4 ms ✓ GTK4_jll 6195.9 ms ✓ Optim → OptimMOIExt 46156.4 ms ✓ Gtk4  (julia:884): Gtk-WARNING **: 00:21:56.740: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id 26216.7 ms ✓ GtkObservables  (julia:893): Gtk-WARNING **: 00:22:31.024: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id 17533.3 ms ✓ ProfileView 21781.5 ms ✓ PhyNEST 212 dependencies successfully precompiled in 853 seconds. 40 already precompiled. 2 dependencies had output during precompilation: ┌ GtkObservables │ (julia:884): Gtk-WARNING **: 00:21:56.740: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id └ ┌ ProfileView │ (julia:893): Gtk-WARNING **: 00:22:31.024: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id └ Precompilation completed after 859.81s ################################################################################ # Testing # Testing PhyNEST Status `/tmp/jl_vqlzZk/Project.toml` [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.8.1 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.123 ⌅ [e30172f5] Documenter v0.27.25 [35a29f4d] DocumenterTools v0.1.21 ⌃ [d3d80556] LineSearches v7.5.1 ⌅ [429524aa] Optim v1.13.3 [115de871] PhyNEST v0.1.12 ⌅ [33ad39ac] PhyloNetworks v0.15.3 [c46f51b8] ProfileView v1.10.2 ⌅ [2913bbd2] StatsBase v0.33.21 [fd094767] Suppressor v0.2.8 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [56ddb016] Logging v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_vqlzZk/Manifest.toml` [47edcb42] ADTypes v1.21.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.22.0 [67c07d97] Automa v1.1.0 [6e4b80f9] BenchmarkTools v1.6.3 [47718e42] BioGenerics v0.1.5 [7e6ae17a] BioSequences v3.5.1 [3c28c6f8] BioSymbols v5.2.0 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.15 [159f3aea] Cairo v1.1.1 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.1.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.14 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [35a29f4d] DocumenterTools v0.1.21 [4e289a0a] EnumX v1.0.6 [c2308a5c] FASTX v2.1.7 [5789e2e9] FileIO v1.17.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.29.0 [53c48c17] FixedPointNumbers v0.8.5 [08572546] FlameGraphs v1.1.0 [f6369f11] ForwardDiff v1.3.1 ⌅ [d9f16b24] Functors v0.3.0 ⌃ [38e38edf] GLM v1.8.3 [d7ba0133] Git v1.5.0 [a2bd30eb] Graphics v1.1.3 [9db2cae5] Gtk4 v0.7.11 [8710efd8] GtkObservables v2.2.1 [708ec375] Gumbo v0.8.3 [34004b35] HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] IOCapture v0.2.5 [9b13fd28] IndirectArrays v1.0.0 [842dd82b] InlineStrings v1.4.5 [8197267c] IntervalSets v0.7.13 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [b964fa9f] LaTeXStrings v1.4.0 [1d6d02ad] LeftChildRightSiblingTrees v0.2.1 ⌃ [d3d80556] LineSearches v7.5.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [b8f27783] MathOptInterface v1.48.0 [fdba3010] MathProgBase v0.7.8 [85b6ec6f] MethodAnalysis v1.0.0 [e1d29d7a] Missings v1.2.0 [d8a4904e] MutableArithmetics v1.6.7 ⌅ [d41bc354] NLSolversBase v7.10.0 ⌅ [76087f3c] NLopt v0.6.5 [77ba4419] NaNMath v1.1.3 [510215fc] Observables v0.5.5 ⌅ [429524aa] Optim v1.13.3 [bac558e1] OrderedCollections v1.8.1 ⌃ [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [115de871] PhyNEST v0.1.12 ⌅ [33ad39ac] PhyloNetworks v0.15.3 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [c46f51b8] ProfileView v1.10.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [d5f540fe] RoundingIntegers v1.1.0 [fdea26ae] SIMD v3.7.2 [322a6be2] Sass v0.2.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.9 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.5.2 ⌅ [3eaba693] StatsModels v0.6.33 [892a3eda] StringManipulation v0.4.2 [354b36f9] StringViews v1.3.7 [856f2bd8] StructTypes v1.11.0 [fd094767] Suppressor v0.2.8 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [7200193e] Twiddle v1.1.2 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [6e34b625] Bzip2_jll v1.0.9+0 [83423d85] Cairo_jll v1.18.5+0 [2702e6a9] EpollShim_jll v0.0.20230411+1 [2e619515] Expat_jll v2.7.3+0 [a3f928ae] Fontconfig_jll v2.17.1+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [6ebb71f1] GTK4_jll v4.18.6+0 [b0724c58] GettextRuntime_jll v0.22.4+0 [020c3dae] Git_LFS_jll v3.7.0+0 [f8c6e375] Git_jll v2.52.0+0 [7746bdde] Glib_jll v2.86.2+0 [75302f13] Graphene_jll v1.10.8+0 [3b182d85] Graphite2_jll v1.3.15+0 [528830af] Gumbo_jll v0.10.2+0 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [aacddb02] JpegTurbo_jll v3.1.4+0 [88015f11] LERC_jll v4.0.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 [42c93a91] Libepoxy_jll v1.5.11+0 ⌅ [e9f186c6] Libffi_jll v3.4.7+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.2+0 [925c91fb] Librsvg_jll v2.54.7+0 [89763e89] Libtiff_jll v4.7.2+0 [38a345b3] Libuuid_jll v2.41.2+0 [079eb43e] NLopt_jll v2.10.0+0 [9bd350c2] OpenSSH_jll v10.2.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [36c8627f] Pango_jll v1.57.0+0 ⌅ [30392449] Pixman_jll v0.44.2+0 [f50d1b31] Rmath_jll v0.5.1+0 [a2964d1f] Wayland_jll v1.24.0+0 [2381bf8a] Wayland_protocols_jll v1.44.0+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [ffd25f8a] XZ_jll v5.8.2+0 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [935fb764] Xorg_libXcursor_jll v1.2.4+0 [0aeada51] Xorg_libXdamage_jll v1.1.6+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [d091e8ba] Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] Xorg_libXi_jll v1.8.3+0 [d1454406] Xorg_libXinerama_jll v1.1.6+0 [ec84b674] Xorg_libXrandr_jll v1.5.5+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [cc61e674] Xorg_libxkbfile_jll v1.1.3+0 [35661453] Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [b437f822] adwaita_icon_theme_jll v43.0.1+0 [da03df04] gdk_pixbuf_jll v2.42.13+0 [059c91fe] hicolor_icon_theme_jll v0.18.0+0 [bf975903] iso_codes_jll v4.18.0+0 [b53b4c65] libpng_jll v1.6.54+0 [47bcb7c8] libsass_jll v3.6.6+0 [d8fb68d0] xkbcommon_jll v1.13.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests...  (julia:1346): Gtk-WARNING **: 00:34:12.283: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id  (julia:1353): Gtk-WARNING **: 00:34:44.152: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id 2 dependencies had output during precompilation: ┌ ProfileView │ (julia:1353): Gtk-WARNING **: 00:34:44.152: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id └ ┌ GtkObservables │ (julia:1346): Gtk-WARNING **: 00:34:12.283: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id └ Test Summary: | Pass Total Time Testing misc.function get_average | 100 100 1.7s Test Summary: | Pass Total Time Testing site pattern proabilities | 1000 1000 0.1s Test Summary: | Pass Total Time Testing Method-of-moment estimates of speciation times | 1500 1500 0.0s Testing PhyNEST tests passed Testing completed after 759.16s PkgEval succeeded after 1699.05s