Package evaluation to test MetidaBioeq on Julia 1.14.0-DEV.1601 (79ea5eb99c*) started at 2026-01-24T21:47:59.185 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 10.63s ################################################################################ # Installation # Installing MetidaBioeq... Resolving package versions... Installed CodecLz4 ──────────────────── v0.4.6 Installed CommonWorldInvalidations ──── v1.0.0 Installed Indexing ──────────────────── v1.1.1 Installed DiffResults ───────────────── v1.1.0 Installed ForwardDiff ───────────────── v0.10.39 Installed MacroTools ────────────────── v0.5.16 Installed DataStructures ────────────── v0.19.3 Installed MixedModels ───────────────── v4.36.0 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed CodecZstd ─────────────────── v0.8.7 Installed MetidaBase ────────────────── v0.14.1 Installed InlineStrings ─────────────── v1.4.5 Installed Lz4_jll ───────────────────── v1.10.1+0 Installed ArrowTypes ────────────────── v2.3.0 Installed GLM ───────────────────────── v1.9.2 Installed FillArrays ────────────────── v1.16.0 Installed ConstructionBase ──────────── v1.6.0 Installed HypergeometricFunctions ───── v0.3.28 Installed StatsModels ───────────────── v0.7.8 Installed StringViews ───────────────── v1.3.7 Installed Adapt ─────────────────────── v4.4.0 Installed AliasTables ───────────────── v1.1.3 Installed StatsBase ─────────────────── v0.34.10 Installed SplitApplyCombine ─────────── v1.2.3 Installed ConcurrentUtilities ───────── v2.5.0 Installed ExprTools ─────────────────── v0.1.10 Installed MixedModelsDatasets ───────── v0.1.2 Installed ShiftedArrays ─────────────── v2.0.0 Installed TranscodingStreams ────────── v0.11.3 Installed ArrayInterface ────────────── v7.22.0 Installed Optim ─────────────────────── v1.13.3 Installed TimeZones ─────────────────── v1.22.2 Installed Compat ────────────────────── v4.18.1 Installed OrderedCollections ────────── v1.8.1 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed DataAPI ───────────────────── v1.16.0 Installed RecipesBase ───────────────── v1.3.4 Installed InvertedIndices ───────────── v1.3.1 Installed StatsAPI ──────────────────── v1.8.0 Installed PositiveFactorizations ────── v0.2.4 Installed Statistics ────────────────── v1.11.1 Installed CEnum ─────────────────────── v0.5.0 Installed PrecompileTools ───────────── v1.3.3 Installed DataValueInterfaces ───────── v1.0.0 Installed CommonSubexpressions ──────── v0.3.1 Installed CpuId ─────────────────────── v0.3.1 Installed ProgressMeter ─────────────── v1.11.0 Installed SentinelArrays ────────────── v1.4.9 Installed StaticArrays ──────────────── v1.9.16 Installed FastGaussQuadrature ───────── v1.1.0 Installed MetidaNCA ─────────────────── v0.5.18 Installed StaticArraysCore ──────────── v1.4.4 Installed IrrationalConstants ───────── v0.2.6 Installed QuadGK ────────────────────── v2.11.2 Installed StringManipulation ────────── v0.4.2 Installed MetidaBioeq ───────────────── v0.2.9 Installed NaNMath ───────────────────── v1.1.3 Installed SciMLPublic ───────────────── v1.0.1 Installed CPUSummary ────────────────── v0.2.7 Installed Requires ──────────────────── v1.3.1 Installed JSON3 ─────────────────────── v1.14.3 Installed ArrayLayouts ──────────────── v1.12.2 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed BitIntegers ───────────────── v0.3.7 Installed LogExpFunctions ───────────── v0.3.29 Installed DiffRules ─────────────────── v1.15.1 Installed Parsers ───────────────────── v2.8.3 Installed Rmath ─────────────────────── v0.9.0 Installed FiniteDiff ────────────────── v2.29.0 Installed PrettyTables ──────────────── v2.4.0 Installed Metida ────────────────────── v0.16.4 Installed TypedTables ───────────────── v1.4.6 Installed IfElse ────────────────────── v0.1.1 Installed Distributions ─────────────── v0.25.123 Installed StatsFuns ─────────────────── v1.5.2 Installed Tables ────────────────────── v1.12.1 Installed PtrArrays ─────────────────── v1.3.0 Installed EnumX ─────────────────────── v1.0.6 Installed NLSolversBase ─────────────── v7.10.0 Installed Scratch ───────────────────── v1.3.0 Installed Reexport ──────────────────── v1.2.2 Installed SpecialFunctions ──────────── v2.6.1 Installed DataFrames ────────────────── v1.8.1 Installed BandedMatrices ────────────── v1.11.0 Installed Setfield ──────────────────── v1.1.2 Installed Missings ──────────────────── v1.2.0 Installed Preferences ───────────────── v1.5.1 Installed Static ────────────────────── v1.3.1 Installed PooledArrays ──────────────── v1.4.3 Installed JLLWrappers ───────────────── v1.7.1 Installed TableTraits ───────────────── v1.0.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed PDMats ────────────────────── v0.11.37 Installed TZJData ───────────────────── v1.5.0+2025b Installed SortingAlgorithms ─────────── v1.2.2 Installed LineSearches ──────────────── v7.5.1 Installed StructTypes ───────────────── v1.11.0 Installed Crayons ───────────────────── v4.1.1 Installed Mocking ───────────────────── v0.8.1 Installed NLopt ─────────────────────── v1.2.1 Installed ADTypes ───────────────────── v1.21.0 Installed Dictionaries ──────────────── v0.4.6 Installed CategoricalArrays ─────────── v0.10.9 Installed DocStringExtensions ───────── v0.9.5 Installed NLopt_jll ─────────────────── v2.10.0+0 Installed BSplineKit ────────────────── v0.19.1 Installed Arrow ─────────────────────── v2.8.1 Installed DifferentiationInterface ──── v0.7.14 Installing 5 artifacts Installed artifact Rmath 121.9 KiB Installed artifact NLopt 322.7 KiB Installed artifact Lz4 239.7 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact tzjdata 112.5 KiB Updating `~/.julia/environments/v1.14/Project.toml` [00e1d80e] + MetidaBioeq v0.2.9 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [4c555306] + ArrayLayouts v1.12.2 [69666777] + Arrow v2.8.1 [31f734f8] + ArrowTypes v2.3.0 [093aae92] + BSplineKit v0.19.1 [aae01518] + BandedMatrices v1.11.0 [c3b6d118] + BitIntegers v0.3.7 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.7 ⌅ [324d7699] + CategoricalArrays v0.10.9 [5ba52731] + CodecLz4 v0.4.6 [6b39b394] + CodecZstd v0.8.7 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [85a47980] + Dictionaries v0.4.6 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.14 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.6 [e2ba6199] + ExprTools v0.1.10 [442a2c76] + FastGaussQuadrature v1.1.0 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.29.0 ⌅ [f6369f11] + ForwardDiff v0.10.39 [38e38edf] + GLM v1.9.2 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [313cdc1a] + Indexing v1.1.1 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] + LaTeXStrings v1.4.0 ⌃ [d3d80556] + LineSearches v7.5.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 ⌅ [a1dec852] + Metida v0.16.4 ⌅ [075456b7] + MetidaBase v0.14.1 [00e1d80e] + MetidaBioeq v0.2.9 ⌅ [097c2839] + MetidaNCA v0.5.18 [e1d29d7a] + Missings v1.2.0 ⌅ [ff71e718] + MixedModels v4.36.0 [7e9fb7ac] + MixedModelsDatasets v0.1.2 [78c3b35d] + Mocking v0.8.1 ⌅ [d41bc354] + NLSolversBase v7.10.0 [76087f3c] + NLopt v1.2.1 [77ba4419] + NaNMath v1.1.3 ⌅ [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 ⌅ [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [431bcebd] + SciMLPublic v1.0.1 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [03a91e81] + SplitApplyCombine v1.2.3 [aedffcd0] + Static v1.3.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.8 [892a3eda] + StringManipulation v0.4.2 [354b36f9] + StringViews v1.3.7 [856f2bd8] + StructTypes v1.11.0 [dc5dba14] + TZJData v1.5.0+2025b [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [f269a46b] + TimeZones v1.22.2 [3bb67fe8] + TranscodingStreams v0.11.3 [9d95f2ec] + TypedTables v1.4.6 [5ced341a] + Lz4_jll v1.10.1+0 [079eb43e] + NLopt_jll v2.10.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 12.38s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4717.5 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling packages... 4644.6 ms ✓ MacroTools 1753.6 ms ✓ InlineStrings 916.8 ms ✓ Reexport 1443.6 ms ✓ ConstructionBase 2741.3 ms ✓ IrrationalConstants 1187.4 ms ✓ DataValueInterfaces 928.7 ms ✓ StatsAPI 846.2 ms ✓ CEnum 870.1 ms ✓ Indexing 1479.6 ms ✓ StringViews 1599.1 ms ✓ TranscodingStreams 948.0 ms ✓ LaTeXStrings 1258.4 ms ✓ Statistics 999.5 ms ✓ StaticArraysCore 1204.1 ms ✓ IfElse 960.3 ms ✓ PtrArrays 1287.5 ms ✓ BitIntegers 1079.4 ms ✓ PositiveFactorizations 863.2 ms ✓ DataAPI 859.7 ms ✓ SciMLPublic 860.0 ms ✓ CommonWorldInvalidations 899.5 ms ✓ InvertedIndices 988.7 ms ✓ ShiftedArrays 854.6 ms ✓ EnumX 989.1 ms ✓ WorkerUtilities 992.5 ms ✓ TZJData 2221.9 ms ✓ FillArrays 960.1 ms ✓ ExprTools 1258.5 ms ✓ OrderedCollections 1383.5 ms ✓ ADTypes 1147.4 ms ✓ DocStringExtensions 787.5 ms ✓ IteratorInterfaceExtensions 1911.0 ms ✓ Crayons 1121.4 ms ✓ NaNMath 1205.2 ms ✓ Requires 992.0 ms ✓ ArrowTypes 1980.7 ms ✓ ConcurrentUtilities 1818.2 ms ✓ CpuId 2041.3 ms ✓ PDMats 1144.6 ms ✓ Scratch 2281.2 ms ✓ SentinelArrays 1754.9 ms ✓ StructTypes 1760.9 ms ✓ ProgressMeter 1303.3 ms ✓ Compat 1354.6 ms ✓ Preferences 2015.8 ms ✓ CommonSubexpressions 848.7 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 1977.1 ms ✓ Dictionaries 1774.8 ms ✓ CodecZstd 963.6 ms ✓ CodecZlib 1407.1 ms ✓ Statistics → SparseArraysExt 887.6 ms ✓ DiffResults 1002.0 ms ✓ AliasTables 996.3 ms ✓ Missings 1147.4 ms ✓ PooledArrays 1645.7 ms ✓ FillArrays → FillArraysSparseArraysExt 1099.3 ms ✓ FillArrays → FillArraysStatisticsExt 3719.3 ms ✓ DataStructures 837.3 ms ✓ ADTypes → ADTypesConstructionBaseExt 2064.1 ms ✓ DifferentiationInterface 1449.6 ms ✓ LogExpFunctions 785.0 ms ✓ TableTraits 963.6 ms ✓ Adapt 896.4 ms ✓ InlineStrings → ArrowTypesExt 1538.4 ms ✓ FillArrays → FillArraysPDMatsExt 902.6 ms ✓ Compat → CompatLinearAlgebraExt 1069.8 ms ✓ PrecompileTools 1335.9 ms ✓ JLLWrappers 2938.1 ms ✓ Setfield 1449.7 ms ✓ SplitApplyCombine 3169.6 ms ✓ CategoricalArrays 1199.4 ms ✓ SortingAlgorithms 2395.7 ms ✓ QuadGK 1489.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 1731.2 ms ✓ Tables 1298.6 ms ✓ ArrayInterface 1372.8 ms ✓ Adapt → AdaptSparseArraysExt 2143.3 ms ✓ FilePathsBase 1283.2 ms ✓ Mocking 3419.1 ms ✓ StringManipulation 13793.7 ms ✓ StaticArrays 2986.1 ms ✓ RecipesBase 16610.1 ms ✓ Parsers 6863.0 ms ✓ Static 1733.7 ms ✓ Lz4_jll 1629.6 ms ✓ NLopt_jll 1496.2 ms ✓ Rmath_jll 1575.7 ms ✓ OpenSpecFun_jll 1085.3 ms ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt 1252.7 ms ✓ CategoricalArrays → CategoricalArraysStructTypesExt 4713.0 ms ✓ StatsBase 1805.7 ms ✓ TypedTables 804.7 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1292.1 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 2821.4 ms ✓ FilePathsBase → FilePathsBaseTestExt 950.4 ms ✓ FilePathsBase → FilePathsBaseMmapExt 5826.8 ms ✓ TimeZones 28966.4 ms ✓ PrettyTables 1672.4 ms ✓ StaticArrays → StaticArraysStatisticsExt 1457.7 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1615.4 ms ✓ FillArrays → FillArraysStaticArraysExt 1521.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1429.9 ms ✓ Adapt → AdaptStaticArraysExt 1535.0 ms ✓ CategoricalArrays → CategoricalArraysRecipesBaseExt 14497.2 ms ✓ JSON3 1015.1 ms ✓ InlineStrings → ParsersExt 2335.3 ms ✓ CPUSummary 1969.6 ms ✓ CodecLz4 2067.0 ms ✓ NLopt 1707.1 ms ✓ Rmath 5216.7 ms ✓ SpecialFunctions 1470.7 ms ✓ PDMats → StatsBaseExt 1320.6 ms ✓ FiniteDiff 5075.8 ms ✓ TimeZones → TimeZonesRecipesBaseExt 74932.3 ms ✓ DataFrames 21731.5 ms ✓ ArrayLayouts 1129.1 ms ✓ JSON3 → JSON3ArrowExt 2469.8 ms ✓ WeakRefStrings 15948.7 ms ✓ Arrow 4828.8 ms ✓ FastGaussQuadrature 2171.4 ms ✓ HypergeometricFunctions 1206.9 ms ✓ DiffRules 1346.1 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1284.5 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 987.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 22837.0 ms ✓ BandedMatrices 3365.7 ms ✓ ArrayLayouts → ArrayLayoutsSparseArraysExt 26030.6 ms ✓ CSV 8421.6 ms ✓ MixedModelsDatasets 5699.1 ms ✓ CategoricalArrays → CategoricalArraysArrowExt 2728.0 ms ✓ StatsFuns 6471.9 ms ✓ ForwardDiff 4776.6 ms ✓ BandedMatrices → BandedMatricesSparseArraysExt 4149.4 ms ✓ ArrayInterface → ArrayInterfaceBandedMatricesExt 3984.2 ms ✓ FiniteDiff → FiniteDiffBandedMatricesExt 5151.0 ms ✓ StatsModels 9299.1 ms ✓ Distributions 2248.9 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1537.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 7362.9 ms ✓ MetidaBase 4793.5 ms ✓ GLM 3226.5 ms ✓ Distributions → DistributionsTestExt 21595.8 ms ✓ BSplineKit 2009.1 ms ✓ NLSolversBase 13228.3 ms ✓ MetidaNCA  Downloading artifact: TestData 124159.4 ms ✓ MixedModels 2435.3 ms ✓ LineSearches 6411.2 ms ✓ Optim 8481.3 ms ✓ Metida 41466.1 ms ✓ MetidaBioeq 150 dependencies successfully precompiled in 729 seconds. 40 already precompiled. 1 dependency had output during precompilation: ┌ MixedModels │ Downloading artifact: TestData └ Precompilation completed after 738.49s ################################################################################ # Testing # Testing MetidaBioeq Status `/tmp/jl_RtSz1a/Project.toml` [336ed68f] CSV v0.10.15 ⌅ [324d7699] CategoricalArrays v0.10.9 [a93c6f00] DataFrames v1.8.1 [31c24e10] Distributions v0.25.123 [38e38edf] GLM v1.9.2 ⌅ [a1dec852] Metida v0.16.4 ⌅ [075456b7] MetidaBase v0.14.1 [00e1d80e] MetidaBioeq v0.2.9 ⌅ [097c2839] MetidaNCA v0.5.18 ⌅ [ff71e718] MixedModels v4.36.0 [2913bbd2] StatsBase v0.34.10 [3eaba693] StatsModels v0.7.8 [8dfed614] Test v1.11.0 Status `/tmp/jl_RtSz1a/Manifest.toml` [47edcb42] ADTypes v1.21.0 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.22.0 [4c555306] ArrayLayouts v1.12.2 [69666777] Arrow v2.8.1 [31f734f8] ArrowTypes v2.3.0 [093aae92] BSplineKit v0.19.1 [aae01518] BandedMatrices v1.11.0 [c3b6d118] BitIntegers v0.3.7 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.15 ⌅ [324d7699] CategoricalArrays v0.10.9 [5ba52731] CodecLz4 v0.4.6 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.7 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [85a47980] Dictionaries v0.4.6 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.14 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.6 [e2ba6199] ExprTools v0.1.10 [442a2c76] FastGaussQuadrature v1.1.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.29.0 ⌅ [f6369f11] ForwardDiff v0.10.39 [38e38edf] GLM v1.9.2 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [313cdc1a] Indexing v1.1.1 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [0f8b85d8] JSON3 v1.14.3 [b964fa9f] LaTeXStrings v1.4.0 ⌃ [d3d80556] LineSearches v7.5.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 ⌅ [a1dec852] Metida v0.16.4 ⌅ [075456b7] MetidaBase v0.14.1 [00e1d80e] MetidaBioeq v0.2.9 ⌅ [097c2839] MetidaNCA v0.5.18 [e1d29d7a] Missings v1.2.0 ⌅ [ff71e718] MixedModels v4.36.0 [7e9fb7ac] MixedModelsDatasets v0.1.2 [78c3b35d] Mocking v0.8.1 ⌅ [d41bc354] NLSolversBase v7.10.0 [76087f3c] NLopt v1.2.1 [77ba4419] NaNMath v1.1.3 ⌅ [429524aa] Optim v1.13.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 ⌅ [08abe8d2] PrettyTables v2.4.0 [92933f4c] 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[76eceee3] WorkerUtilities v1.6.1 [5ced341a] Lz4_jll v1.10.1+0 [079eb43e] NLopt_jll v2.10.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ caller = glm(::Matrix{Float64}, ::Vector{Float64}, ::Distributions.Bernoulli{Float64}, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Any, Nothing, @NamedTuple{wts::Vector{Float64}, dofit::Bool, offset::Vector{Float64}}}) at glmfit.jl:618 └ @ Core ~/.julia/packages/GLM/IngN2/src/glmfit.jl:618 1 dependency had output during precompilation: ┌ MixedModels │ ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ │ caller = glm(::Matrix{Float64}, ::Vector{Float64}, ::Distributions.Bernoulli{Float64}, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Any, Nothing, @NamedTuple{wts::Vector{Float64}, dofit::Bool, offset::Vector{Float64}}}) at glmfit.jl:618 │ └ @ Core ~/.julia/packages/GLM/IngN2/src/glmfit.jl:618 └ [ Info: autoseq is `true`, but sequence defined - sequence column used [ Info: Dropuot(s) found in dataframe! [ Info: Sequences looks correct... [ Info: Trying to find out the design... [ Info: Seems design type is: 2X2X4 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 Minimizing 2 Time: 0:00:00 ( 0.25 s/it) objective: 539.6041230960641   Minimizing 17 Time: 0:00:00 (39.31 ms/it) ┌ Warning: `confint(obj::LinearModel, level::Real)` is deprecated, use `confint(obj, level = level)` instead. │ caller = #confint#72 at statsmodel.jl:28 [inlined] └ @ Core ~/.julia/packages/StatsModels/1QB5l/src/statsmodel.jl:28 ┌ Warning: Method B used, estimator changed to MixedModels.jl! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:500 ┌ Warning: Method C used, estimator changed to Metida.jl! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:503 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 ┌ Warning: Method C used, estimator changed to Metida.jl! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:506 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 ┌ Warning: Method P or unknown, method changed to "B"! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:495 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 ┌ Warning: Method P or unknown, method changed to "B"! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:495 [ Info: Reference formulation not specified. First used: "R". [ Info: autoseq is `true`, but sequence defined - sequence column used [ Info: No dropuot(s) found in dataframe! [ Info: Sequences looks correct... [ Info: Trying to find out the design... [ Info: Seems design type is: 2X2X2 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 [ Info: Reference formulation not specified. First used: "R". [ Info: Parallel desigh used. ┌ Warning: Method not P (parallel), for parallel simple GLM model will be used! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:426 ┌ Warning: Design is parallel, but estimator not GLM, GLM will be used! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:425 ┌ Warning: Design is parallel, but estimator not GLM, GLM will be used! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:425 [ Info: Reference formulation not specified. First used: "R". [ Info: autoseq is `true`, but sequence defined - sequence column used [ Info: No dropuot(s) found in dataframe! [ Info: Sequences looks correct... [ Info: Design type seems fine... ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 ┌ Warning: Method C can't be used with 2X2 design! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:444 ┌ Warning: Method B will be used! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:450 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 ┌ Warning: Method for parallel design can't be used with 2X2 design! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:445 ┌ Warning: Method A will be used! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:447 [ Info: No dropuot(s) found in dataframe! [ Info: Sequences looks correct... [ Info: Trying to find out the design... [ Info: Seems design type is: 2X2X2 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 Basic test: Test Failed at /home/pkgeval/.julia/packages/MetidaBioeq/iXqnI/test/tests.jl:176 Expression: MetidaBioeq.estimate(be2; estimator = "met", method = "B") Expected stderr: "" (nowarn) Captured stderr: "┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol.\n└ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110\n┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol.\n└ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110\n" Stacktrace: [1] record(ts::Test.DefaultTestSet, t::Union{Test.Error, Test.Fail}; print_result::Bool) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1573 [2] record(ts::Test.DefaultTestSet, t::Union{Test.Error, Test.Fail}) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1565 [3] top-level scope @ ~/.julia/packages/MetidaBioeq/iXqnI/test/tests.jl:30 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [5] macro expansion @ ~/.julia/packages/MetidaBioeq/iXqnI/test/tests.jl:176 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1334 [inlined] [ Info: autoseq is `true`, but sequence defined - sequence column used [ Info: Dropuot(s) found in dataframe! [ Info: Sequences looks correct... [ Info: Trying to find out the design... [ Info: Seems design type is: 2X2X2 [ Info: autoseq is `true`, but sequence defined - sequence column used [ Info: Dropuot(s) found in dataframe! [ Info: Dropuot(s) removed! [ Info: Sequences looks correct... [ Info: Trying to find out the design... [ Info: Seems design type is: 2X2X2 Test Summary: | Pass Fail Total Time Basic test | 61 1 62 3m44.3s RNG of the outermost testset: Random.Xoshiro(0x090b48af567190a3, 0x753eb7904d0ca432, 0x501572fcbf7028ff, 0x95059c94b225e18e, 0x0c59f660d9d17516) ERROR: LoadError: Some tests did not pass: 61 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MetidaBioeq/iXqnI/test/tests.jl:28 in expression starting at /home/pkgeval/.julia/packages/MetidaBioeq/iXqnI/test/runtests.jl:3 Testing failed after 1000.99s ERROR: LoadError: Package MetidaBioeq errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3122 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2987 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval failed after 1851.68s: package has test failures