Package evaluation to test ConstraintTrees on Julia 1.14.0-DEV.1601 (79ea5eb99c*) started at 2026-01-24T10:01:04.384 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 10.72s ################################################################################ # Installation # Installing ConstraintTrees... Resolving package versions... Installed Compat ────────────── v4.18.1 Installed ConstructionBase ──── v1.6.0 Installed OrderedCollections ── v1.8.1 Installed DataStructures ────── v0.18.22 Installed DocStringExtensions ─ v0.9.5 Installed ConstraintTrees ───── v1.11.0 Updating `~/.julia/environments/v1.14/Project.toml` [5515826b] + ConstraintTrees v1.11.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [34da2185] + Compat v4.18.1 [5515826b] + ConstraintTrees v1.11.0 [187b0558] + ConstructionBase v1.6.0 ⌅ [864edb3b] + DataStructures v0.18.22 [ffbed154] + DocStringExtensions v0.9.5 [bac558e1] + OrderedCollections v1.8.1 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.35s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4735.9 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling packages... 4803.5 ms ✓ MacroTools 1440.9 ms ✓ Statistics 1367.7 ms ✓ ConstructionBase 2461.7 ms ✓ IrrationalConstants 1016.1 ms ✓ StaticArraysCore 1211.8 ms ✓ Requires 1307.9 ms ✓ OrderedCollections 965.9 ms ✓ InverseFunctions 876.2 ms ✓ CompositionsBase 1145.0 ms ✓ DocStringExtensions 949.8 ms ✓ ExprTools 834.0 ms ✓ IfElse 1302.9 ms ✓ TranscodingStreams 1754.7 ms ✓ AMD 1715.8 ms ✓ GenericLinearAlgebra 1087.4 ms ✓ NaNMath 1713.7 ms ✓ StructTypes 1520.1 ms ✓ StructUtils 34106.7 ms ✓ Unitful 1205.3 ms ✓ Compat 1234.5 ms ✓ Preferences 12352.2 ms ✓ MutableArithmetics 1772.5 ms ✓ CommonSubexpressions 1385.7 ms ✓ Statistics → SparseArraysExt 886.6 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 929.8 ms ✓ DiffResults 1793.0 ms ✓ InverseFunctions → InverseFunctionsTestExt 908.2 ms ✓ InverseFunctions → InverseFunctionsDatesExt 852.2 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1391.5 ms ✓ LogExpFunctions 3524.3 ms ✓ TimerOutputs 1019.9 ms ✓ CodecZlib 1417.4 ms ✓ QDLDL 2410.3 ms ✓ Unitful → PrintfExt 2237.3 ms ✓ Unitful → ConstructionBaseUnitfulExt 2208.0 ms ✓ Unitful → InverseFunctionsUnitfulExt 2223.3 ms ✓ Unitful → NaNMathExt 886.9 ms ✓ Compat → CompatLinearAlgebraExt 1249.8 ms ✓ JLLWrappers 1149.3 ms ✓ SnoopPrecompile 954.0 ms ✓ PrecompileTools 5234.3 ms ✓ Accessors 857.9 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 3910.0 ms ✓ DataStructures 1566.7 ms ✓ boost_jll 1458.2 ms ✓ METIS_jll 1457.2 ms ✓ OpenBLAS32_jll 1491.6 ms ✓ Xorg_libpciaccess_jll 1466.8 ms ✓ Bzip2_jll 1473.6 ms ✓ GLPK_jll 1536.5 ms ✓ Ncurses_jll 1435.7 ms ✓ Libiconv_jll 1477.1 ms ✓ oneTBB_jll 1457.1 ms ✓ ASL_jll 1463.6 ms ✓ OpenSpecFun_jll 1568.6 ms ✓ bliss_jll 14106.8 ms ✓ StaticArrays 18252.3 ms ✓ Parsers 2710.1 ms ✓ Accessors → LinearAlgebraExt 2367.1 ms ✓ Accessors → TestExt 2484.0 ms ✓ Accessors → UnitfulExt 3855.8 ms ✓ ConstraintTrees 1625.8 ms ✓ MUMPS_seq_jll 1186.2 ms ✓ CodecBzip2 1572.6 ms ✓ Readline_jll 1490.5 ms ✓ XML2_jll 5671.0 ms ✓ SpecialFunctions 1725.7 ms ✓ StaticArrays → StaticArraysStatisticsExt 1594.4 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1625.7 ms ✓ Accessors → StaticArraysExt 15153.0 ms ✓ JSON3 7451.5 ms ✓ JSON 1503.7 ms ✓ SBML_jll 1471.3 ms ✓ Hwloc_jll 1317.3 ms ✓ DiffRules 3199.6 ms ✓ BenchmarkTools 18251.4 ms ✓ SBML 1507.3 ms ✓ SPRAL_jll 6791.3 ms ✓ ForwardDiff 1530.6 ms ✓ Ipopt_jll 1670.1 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1884.5 ms ✓ Unitful → ForwardDiffExt 76995.9 ms ✓ MathOptInterface 1527.5 ms ✓ SCIP_jll 1690.0 ms ✓ SCIP_PaPILO_jll 66312.8 ms ✓ JuMP 161605.6 ms ✓ Clarabel 9292.2 ms ✓ GLPK 15545.5 ms ✓ SCIP 89 dependencies successfully precompiled in 589 seconds. 37 already precompiled. Precompilation completed after 639.08s ################################################################################ # Testing # Testing ConstraintTrees Status `/tmp/jl_sX0EwG/Project.toml` [7d9f7c33] Accessors v0.1.43 ⌅ [61c947e1] Clarabel v0.6.0 [5515826b] ConstraintTrees v1.11.0 [187b0558] ConstructionBase v1.6.0 ⌅ [864edb3b] DataStructures v0.18.22 [ffbed154] DocStringExtensions v0.9.5 [60bf3e95] GLPK v1.2.1 [682c06a0] JSON v1.4.0 [4076af6c] JuMP v1.29.4 [e5567a89] SBML v1.6.0 ⌅ [82193955] SCIP v0.11.14 [f43a241f] Downloads v1.7.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_sX0EwG/Manifest.toml` [14f7f29c] AMD v0.5.3 [7d9f7c33] Accessors v0.1.43 [6e4b80f9] BenchmarkTools v1.6.3 ⌅ [61c947e1] Clarabel v0.6.0 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [5515826b] ConstraintTrees v1.11.0 [187b0558] ConstructionBase v1.6.0 ⌅ [864edb3b] DataStructures v0.18.22 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [f6369f11] ForwardDiff v1.3.1 [60bf3e95] GLPK v1.2.1 [14197337] GenericLinearAlgebra v0.3.19 [615f187c] IfElse v0.1.1 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.4.0 [0f8b85d8] JSON3 v1.14.3 [4076af6c] JuMP v1.29.4 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [b8f27783] MathOptInterface v1.48.0 [d8a4904e] MutableArithmetics v1.6.7 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [bfc457fd] QDLDL v0.4.1 [ae029012] Requires v1.3.1 [e5567a89] SBML v1.6.0 ⌅ [82193955] SCIP v0.11.14 [66db9d55] SnoopPrecompile v1.0.3 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [856f2bd8] StructTypes v1.11.0 [ec057cc2] StructUtils v2.6.2 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [1986cc42] Unitful v1.27.0 [ae81ac8f] ASL_jll v0.1.3+0 [6e34b625] Bzip2_jll v1.0.9+0 [e8aa6df9] GLPK_jll v5.0.1+1 [e33a78d0] Hwloc_jll v2.12.2+0 ⌅ [9cc047cb] Ipopt_jll v300.1400.1302+0 [94ce4f54] Libiconv_jll v1.18.0+0 [d00139f3] METIS_jll v5.1.3+0 ⌅ [d7ed1dd3] MUMPS_seq_jll v500.600.100+0 [68e3532b] Ncurses_jll v6.6.0+2 [656ef2d0] OpenBLAS32_jll v0.3.30+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [05236dd9] Readline_jll v8.3.0+0 [bb12108a] SBML_jll v5.21.0+0 ⌅ [fc9abe76] SCIP_PaPILO_jll v800.100.0+0 ⌅ [e5ac4fe4] SCIP_jll v800.100.0+1 ⌅ [319450e9] SPRAL_jll v2023.8.2+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [508c9074] bliss_jll v0.77.0+1 ⌅ [28df3c45] boost_jll v1.79.0+3 ⌅ [1317d2d5] oneTBB_jll v2021.12.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... WARNING: Method definition default_pretty_output_io() in module ConstraintTrees at /home/pkgeval/.julia/packages/ConstraintTrees/HfH8F/src/pretty.jl:65 overwritten in module Main at /home/pkgeval/.julia/packages/ConstraintTrees/HfH8F/test/runtests.jl:23. Metabolic modeling: Test Failed at /home/pkgeval/.julia/packages/ConstraintTrees/HfH8F/docs/src/1-metabolic-modeling.jl:482 Expression: c.community.species1.handicap.value.idxs == [49] Evaluated: [70] == [49] Stacktrace: [1] top-level scope @ ~/.julia/packages/ConstraintTrees/HfH8F/docs/src/1-metabolic-modeling.jl:556 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:781 [inlined] [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [4] top-level scope @ ~/.julia/packages/ConstraintTrees/HfH8F/test/runtests.jl:22 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [6] macro expansion @ ~/.julia/packages/ConstraintTrees/HfH8F/test/runtests.jl:26 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [8] macro expansion @ ~/.julia/packages/ConstraintTrees/HfH8F/test/runtests.jl:26 [inlined] Serialization: Error During Test at /home/pkgeval/.julia/packages/ConstraintTrees/HfH8F/test/runtests.jl:45 Got exception outside of a @test LoadError: MethodError: no method matching deserialize(::Type{ConstraintTrees.ConstraintTree}, ::JSON.Object{String, Any}) The function `deserialize` exists, but no method is defined for this combination of argument types. Closest candidates are: deserialize(::Type{ConstraintTrees.Tree{T}}, !Matched::Dict) where T @ ConstraintTrees ~/.julia/packages/ConstraintTrees/HfH8F/src/serialize.jl:85 deserialize(!Matched::Type{ConstraintTrees.EqualTo}, !Matched::Float64) @ ConstraintTrees ~/.julia/packages/ConstraintTrees/HfH8F/src/serialize.jl:125 deserialize(!Matched::Type{ConstraintTrees.Constraint}, !Matched::Dict) @ ConstraintTrees ~/.julia/packages/ConstraintTrees/HfH8F/src/serialize.jl:103 ... Stacktrace: [1] top-level scope @ ~/.julia/packages/ConstraintTrees/HfH8F/docs/src/6-io.jl:76 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [3] top-level scope @ ~/.julia/packages/ConstraintTrees/HfH8F/test/runtests.jl:22 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [5] macro expansion @ ~/.julia/packages/ConstraintTrees/HfH8F/test/runtests.jl:46 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [7] macro expansion @ ~/.julia/packages/ConstraintTrees/HfH8F/test/runtests.jl:46 [inlined] [8] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [9] top-level scope @ none:6 [10] eval(m::Module, e::Any) @ Core ./boot.jl:489 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [12] _start() @ Base ./client.jl:585 in expression starting at /home/pkgeval/.julia/packages/ConstraintTrees/HfH8F/docs/src/6-io.jl:76 Test Summary: | Pass Fail Error Total Time ConstraintTrees tests | 140 1 1 142 13m00.8s Metabolic modeling | 17 1 18 6m33.0s Quadratic optimization | 7 7 4m44.0s Mixed-integer optimization | 5 5 55.0s Functional tree processing | 31 31 24.8s JuMP integration improvements | 5 5 0.5s Serialization | 1 1 15.2s Miscellaneous methods | 74 74 8.1s RNG of the outermost testset: Random.Xoshiro(0x06fcb37db86879ec, 0x71e771e7a52de247, 0xe5dd44609e08d2fc, 0x568b721a59fc9606, 0x37d57dd0340659d7) ERROR: LoadError: Some tests did not pass: 140 passed, 1 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/ConstraintTrees/HfH8F/test/runtests.jl:19 Testing failed after 805.49s ERROR: LoadError: Package ConstraintTrees errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3122 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2987 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval failed after 1496.05s: package tests unexpectedly errored