Package evaluation to test Zarr on Julia 1.14.0-DEV.1589 (2d9a3f8a61*) started at 2026-01-21T11:52:11.717 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 10.76s ################################################################################ # Installation # Installing Zarr... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [0a941bbe] + Zarr v0.9.6 Updating `~/.julia/environments/v1.14/Manifest.toml` [fbe9abb3] + AWS v1.97.1 [1c724243] + AWSS3 v0.11.4 [dce04be8] + ArgCheck v2.5.0 [31f734f8] + ArrowTypes v2.3.0 [d1d4a3ce] + BitFlags v0.1.9 [a74b3585] + Blosc v0.7.3 [0b6fb165] + ChunkCodecCore v1.0.1 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [6309b1aa] + CodecInflate64 v0.1.3 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [864edb3b] + DataStructures v0.19.3 [b342263e] + DateTimes64 v1.0.1 [3c3547ce] + DiskArrays v0.4.18 [460bff9d] + ExceptionUnwrapping v0.1.11 [e2ba6199] + ExprTools v0.1.10 [8f5d6c58] + EzXML v1.2.3 [48062228] + FilePathsBase v0.9.24 [bc5e4493] + GitHub v5.12.0 [cd3eb016] + HTTP v1.10.19 [076d061b] + HashArrayMappedTries v0.2.0 [83e8ac13] + IniFile v0.5.1 [0c81fc1b] + InputBuffers v1.1.1 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.4.0 [8ac3fa9e] + LRUCache v1.6.2 [e6f89c97] + LoggingExtras v1.2.0 [739be429] + MbedTLS v1.1.9 [78c3b35d] + Mocking v0.8.1 [6fe1bfb0] + OffsetArrays v1.17.0 [4d8831e6] + OpenSSL v1.6.1 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [20febd7b] + Retry v0.4.1 [7e506255] + ScopedValues v1.5.0 [777ac1f9] + SimpleBufferStream v1.2.0 [2133526b] + SodiumSeal v0.1.1 [ec057cc2] + StructUtils v2.6.2 [2da68c74] + SymDict v0.3.0 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [228000da] + XMLDict v0.4.1 [0a941bbe] + Zarr v0.9.6 [49080126] + ZipArchives v2.6.0 [0b7ba130] + Blosc_jll v1.21.7+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [02c8fc9c] + XML2_jll v2.15.1+0 [a9144af2] + libsodium_jll v1.0.21+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Installation completed after 5.36s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 8639.1 ms ✓ Zarr 1 dependency successfully precompiled in 10 seconds. 113 already precompiled. Precompilation completed after 28.98s ################################################################################ # Testing # Testing Zarr Status `/tmp/jl_lHDZ0R/Project.toml` [992eb4ea] CondaPkg v0.2.33 [682c06a0] JSON v1.4.0 [4281f0d9] Minio v0.2.2 [6099a3de] PythonCall v0.9.31 [0a941bbe] Zarr v0.9.6 `~/.julia/packages/Zarr/Ro7PO` [ade2ca70] Dates v1.11.0 [a63ad114] Mmap v1.11.0 [44cfe95a] Pkg v1.14.0 [9a3f8284] Random v1.11.0 [6462fe0b] Sockets v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_lHDZ0R/Manifest.toml` [fbe9abb3] AWS v1.97.1 [1c724243] AWSS3 v0.11.4 [dce04be8] ArgCheck v2.5.0 [31f734f8] ArrowTypes v2.3.0 [d1d4a3ce] BitFlags v0.1.9 [a74b3585] Blosc v0.7.3 [0b6fb165] ChunkCodecCore v1.0.1 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [6309b1aa] CodecInflate64 v0.1.3 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [992eb4ea] CondaPkg v0.2.33 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [b342263e] DateTimes64 v1.0.1 [3c3547ce] DiskArrays v0.4.18 [460bff9d] ExceptionUnwrapping v0.1.11 [e2ba6199] ExprTools v0.1.10 [8f5d6c58] EzXML v1.2.3 [48062228] FilePathsBase v0.9.24 [bc5e4493] GitHub v5.12.0 [cd3eb016] HTTP v1.10.19 [076d061b] HashArrayMappedTries v0.2.0 [83e8ac13] IniFile v0.5.1 [0c81fc1b] InputBuffers v1.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.4.0 [0f8b85d8] JSON3 v1.14.3 [8ac3fa9e] LRUCache v1.6.2 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [739be429] MbedTLS v1.1.9 [0b3b1443] MicroMamba v0.1.14 [4281f0d9] Minio v0.2.2 [78c3b35d] Mocking v0.8.1 [6fe1bfb0] OffsetArrays v1.17.0 [4d8831e6] OpenSSL v1.6.1 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [6099a3de] PythonCall v0.9.31 [20febd7b] Retry v0.4.1 [7e506255] ScopedValues v1.5.0 [6c6a2e73] Scratch v1.3.0 [777ac1f9] SimpleBufferStream v1.2.0 [2133526b] SodiumSeal v0.1.1 [856f2bd8] StructTypes v1.11.0 [ec057cc2] StructUtils v2.6.2 [2da68c74] SymDict v0.3.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [e17b2a0c] UnsafePointers v1.0.0 [228000da] XMLDict v0.4.1 [0a941bbe] Zarr v0.9.6 `~/.julia/packages/Zarr/Ro7PO` [49080126] ZipArchives v2.6.0 [0b7ba130] Blosc_jll v1.21.7+0 [94ce4f54] Libiconv_jll v1.18.0+0 [5ced341a] Lz4_jll v1.10.1+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [02c8fc9c] XML2_jll v2.15.1+0 [a9144af2] libsodium_jll v1.0.21+0 ⌅ [f8abcde7] micromamba_jll v1.5.12+0 ⌅ [ad83bbfc] minio_jll v1.0.0+1 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Type : ZArray Data type : Vector{Float64} Shape : (2, 3) Chunk Shape : (2, 3) Order : C Read-Only : false Compressor : Zarr.BloscCompressor(0, 5, "lz4", 1) Filters : (Zarr.VLenArrayFilter{Float64}(),) Store type : Dictionary Storage No. bytes : unknown No. bytes stored : 108 Storage ratio : unknown Chunks initialized : 1/1 [ Info: Minio server started ┌ Warning: `global_aws_config(config::AbstractAWSConfig)` is deprecated, use `with_aws_config(config) do ... end` instead to temporarily modify the AWS configuration or `default_aws_config(config)` to set the AWS configuration outside the scope of any `with_aws_config` blocks. │ caller = top-level scope at storage.jl:154 └ @ Core ~/.julia/packages/Zarr/Ro7PO/test/storage.jl:154 ┌ Warning: `global_aws_config()` is deprecated, use `current_aws_config()` instead. │ caller = #S3Store#22 at s3store.jl:13 [inlined] └ @ Core ~/.julia/packages/Zarr/Ro7PO/src/Storage/s3store.jl:13 ┌ Warning: `global_aws_config(config::AbstractAWSConfig)` is deprecated, use `with_aws_config(config) do ... end` instead to temporarily modify the AWS configuration or `default_aws_config(config)` to set the AWS configuration outside the scope of any `with_aws_config` blocks. │ caller = top-level scope at storage.jl:174 └ @ Core ~/.julia/packages/Zarr/Ro7PO/test/storage.jl:174 ┌ Warning: `global_aws_config()` is deprecated, use `current_aws_config()` instead. │ caller = storefromstring(::Type{S3Store}, s::String, ::Bool) at s3store.jl:80 └ @ Core ~/.julia/packages/Zarr/Ro7PO/src/Storage/s3store.jl:80 [ Info: Listening on: 127.0.0.1:38203, thread id: 1 [ Info: Server on 127.0.0.1:38203 closing [ Info: Listening on: 127.0.0.1:33931, thread id: 1 [ Info: Server on 127.0.0.1:33931 closing CondaPkg Resolve failed, reverting /tmp/jl_lHDZ0R/CondaPkg.toml Zarr: Error During Test at /home/pkgeval/.julia/packages/Zarr/Ro7PO/test/runtests.jl:8 Got exception outside of a @test LoadError: UndefVarError: `manifest_uuid_path` not defined in `Base` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] getproperty(x::Module, f::Symbol) @ Base ./Base_compiler.jl:50 [2] _resolve_top_env(load_path::Any) @ CondaPkg ~/.julia/packages/CondaPkg/0UqYV/src/resolve.jl:10 [3] resolve(; force::Bool, io::IO, interactive::Bool, dry_run::Bool) @ CondaPkg ~/.julia/packages/CondaPkg/0UqYV/src/resolve.jl:823 [4] kwcall(::NamedTuple, ::typeof(CondaPkg.resolve)) @ CondaPkg ~/.julia/packages/CondaPkg/0UqYV/src/resolve.jl:796 [5] _add_or_rm(op!::Function, pkgs::AbstractVector; channel::Any, resolve::Any, file::Any, io::IO, dev::Bool, kw...) @ CondaPkg ~/.julia/packages/CondaPkg/0UqYV/src/deps.jl:314 [6] kwcall(::NamedTuple, ::typeof(CondaPkg._add_or_rm), op!::Function, pkgs::AbstractVector) @ CondaPkg ~/.julia/packages/CondaPkg/0UqYV/src/deps.jl:287 [7] add(pkgs::AbstractVector; channel::Any, resolve::Any, file::Any, io::IO, kw...) @ CondaPkg ~/.julia/packages/CondaPkg/0UqYV/src/deps.jl:336 [8] add(pkgs::AbstractVector) @ CondaPkg ~/.julia/packages/CondaPkg/0UqYV/src/deps.jl:328 [9] add(pkg::Union{CondaPkg.ChannelSpec, CondaPkg.PipPkgSpec, CondaPkg.PkgSpec}; kw...) @ CondaPkg ~/.julia/packages/CondaPkg/0UqYV/src/deps.jl:339 [10] add(pkg::AbstractString; version::Any, channel::Any, build::Any, kw...) @ CondaPkg ~/.julia/packages/CondaPkg/0UqYV/src/deps.jl:434 [11] kwcall(::NamedTuple, ::typeof(CondaPkg.add), pkg::AbstractString) @ CondaPkg ~/.julia/packages/CondaPkg/0UqYV/src/deps.jl:434 [12] top-level scope @ ~/.julia/packages/Zarr/Ro7PO/test/python.jl:8 [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [14] top-level scope @ ~/.julia/packages/Zarr/Ro7PO/test/runtests.jl:11 [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [16] macro expansion @ ~/.julia/packages/Zarr/Ro7PO/test/runtests.jl:280 [inlined] [17] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [18] top-level scope @ none:6 [19] eval(m::Module, e::Any) @ Core ./boot.jl:489 [20] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [21] _start() @ Base ./client.jl:585 in expression starting at /home/pkgeval/.julia/packages/Zarr/Ro7PO/test/python.jl:8 Test Summary: | Pass Error Total Time Zarr | 376 1 377 3m56.3s ZArray | 37 37 12.0s Groups | 5 5 0.9s Metadata | 40 40 12.3s getindex/setindex | 13 13 18.9s resize | 12 12 2.4s concatenate | 1 1 6.9s string/Char array getindex/setindex | 6 6 12.2s ragged arrays | 5 5 9.5s Fillvalue as missing | 8 8 10.5s Fill_Value nothing with missing chunk | 1 1 0.1s Path Normalization | 5 5 0.0s DirectoryStore | 28 28 1.7s DictStore | 24 24 1.1s Minio S3 storage | 22 22 45.1s AWS S3 Storage | 5 5 13.1s GCS Storage | 24 24 12.0s HTTP Storage | 5 5 15.9s Zip Storage | 25 25 20.4s Fletcher32Filter | 7 7 2.1s FixedScaleOffsetFilter | 20 20 11.8s ShuffleFilter | 52 52 6.5s QuantizeFilter | 25 25 3.5s DeltaFilter | 6 6 4.5s RNG of the outermost testset: Random.Xoshiro(0xb3384431a05b37ca, 0x4940209444644425, 0x198de2cfde93b60d, 0xa72ee0e44c950ed5, 0xa1063a3bde7dfa4d) ERROR: LoadError: Some tests did not pass: 376 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/Zarr/Ro7PO/test/runtests.jl:8 Testing failed after 253.95s ERROR: LoadError: Package Zarr errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3122 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2987 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 323.19s: package tests unexpectedly errored