Package evaluation to test LaMEM on Julia 1.14.0-DEV.1589 (2d9a3f8a61*) started at 2026-01-21T17:35:26.938 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 9.71s ################################################################################ # Installation # Installing LaMEM... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [2e889f3d] + LaMEM v0.4.8 Updating `~/.julia/environments/v1.14/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [7b0aa2c9] + BibTeX v0.1.0 [fa961155] + CEnum v0.5.0 [179af706] + CFTime v0.2.5 [d360d2e6] + ChainRulesCore v1.26.0 [0b6fb165] + ChunkCodecCore v1.0.1 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [1fbeeb36] + CommonDataModel v0.4.2 [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [150eb455] + CoordinateTransformations v0.6.4 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [3c3547ce] + DiskArrays v0.4.18 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [411431e0] + Extents v0.1.6 [c87230d0] + FFMPEG v0.4.5 [5789e2e9] + FileIO v1.17.1 [1a297f60] + FillArrays v1.16.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.3.1 [e018b62d] + GeoParams v0.7.9 [0ef565a4] + Geodesy v1.2.0 [5c1252a2] + GeometryBasics v0.5.10 [3700c31b] + GeophysicalModelGenerator v0.7.16 ⌅ [c27321d9] + Glob v1.3.1 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [7d512f48] + InternedStrings v0.7.0 [a98d9a8b] + Interpolations v0.16.2 [8197267c] + IntervalSets v0.7.13 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [033835bb] + JLD2 v0.6.3 [692b3bcd] + JLLWrappers v1.7.1 [b835a17e] + JpegTurbo v0.1.6 [49dc5b4e] + KernelDensitySJ v0.2.2 [8ac3fa9e] + LRUCache v1.6.2 [2e889f3d] + LaMEM v0.4.8 [b964fa9f] + LaTeXStrings v1.4.0 [8cdb02fc] + LazyModules v0.3.1 [9c8b4983] + LightXML v0.9.3 [4345ca2d] + Loess v0.6.5 [2ab3a3ac] + LogExpFunctions v0.3.29 [da04e1cc] + MPI v0.20.23 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [dbb5928d] + MappedArrays v0.4.3 [7269a6da] + MeshIO v0.5.3 [e1d29d7a] + Missings v1.2.0 [e94cdb99] + MosaicViews v0.3.4 [46d2c3a1] + MuladdMacro v0.2.4 [85f8d34a] + NCDatasets v0.14.10 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.26 [f09324ee] + Netpbm v1.1.1 [6fe1bfb0] + OffsetArrays v1.17.0 [52e1d378] + OpenEXR v0.3.3 [bac558e1] + OrderedCollections v1.8.1 [f57f5aa1] + PNGFiles v0.4.4 [5432bcbf] + PaddedViews v0.5.12 [d96e819e] + Parameters v0.12.3 [eebad327] + PkgVersion v0.3.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [4b34888f] + QOI v1.0.2 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [dc215faf] + ReadVTK v0.2.5 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v2.2.10 [fdea26ae] + SIMD v3.7.2 [431bcebd] + SciMLPublic v1.0.1 [7e506255] + ScopedValues v1.5.0 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.5 [45858cf5] + Sixel v0.1.5 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [cae243ae] + StackViews v0.1.2 [aedffcd0] + Static v1.3.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [62fd8b95] + TensorCore v0.1.1 [731e570b] + TiffImages v0.11.6 [3bb67fe8] + TranscodingStreams v0.11.3 [3a884ed6] + UnPack v1.0.2 [967fb449] + Unidecode v1.2.0 [1986cc42] + Unitful v1.27.0 [4004b06d] + VTKBase v1.0.1 [e3aaa7dc] + WebP v0.1.3 [ea906314] + WhereTheWaterFlows v0.11.1 [efce3f68] + WoodburyMatrices v1.1.0 [64499a7a] + WriteVTK v1.21.2 ⌅ [8ce61222] + Arrow_jll v18.1.1+0 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.5+0 [5ae413db] + EarCut_jll v2.2.4+0 [2e619515] + Expat_jll v2.7.3+0 [b22a6f82] + FFMPEG_jll v8.0.1+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 ⌃ [a7073274] + GDAL_jll v302.1000.100+0 [d604d12d] + GEOS_jll v3.14.1+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [59f7168a] + Giflib_jll v5.2.3+0 [7746bdde] + Glib_jll v2.86.2+0 [3b182d85] + Graphite2_jll v1.3.15+0 ⌅ [0234f1f7] + HDF5_jll v1.14.3+3 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [a51ab1cf] + ICU_jll v76.2.0+0 [905a6f67] + Imath_jll v3.2.2+0 [aacddb02] + JpegTurbo_jll v3.1.4+0 [b39eb1a6] + Kerberos_krb5_jll v1.21.3+0 [c1c5ebd0] + LAME_jll v3.100.3+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 ⌅ [15d6fa20] + LaMEM_jll v2.1.4+0 [08be9ffa] + LibPQ_jll v16.8.0+0 ⌅ [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.2+0 [89763e89] + Libtiff_jll v4.7.2+0 [38a345b3] + Libuuid_jll v2.41.2+0 [d3a379c0] + LittleCMS_jll v2.17.0+0 [5ced341a] + Lz4_jll v1.10.1+0 ⌅ [7cb0a576] + MPICH_jll v4.1.2+1 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 ⌅ [7243133f] + NetCDF_jll v400.902.211+1 [e7412a2a] + Ogg_jll v1.3.6+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [18a262bb] + OpenEXR_jll v3.4.4+0 [643b3616] + OpenJpeg_jll v2.5.5+0 ⌅ [fe0851c0] + OpenMPI_jll v4.1.8+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [91d4177d] + Opus_jll v1.6.0+0 ⌅ [8fa3689e] + PETSc_jll v3.19.6+0 [58948b4f] + PROJ_jll v902.700.0+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 ⌅ [784f63db] + Qhull_jll v8.0.1004+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌃ [aabda75e] + SCALAPACK32_jll v2.2.1+1 [76ed43ae] + SQLite_jll v3.51.2+0 ⌃ [e0b8ae26] + Thrift_jll v0.21.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.2+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 ⌅ [28df3c45] + boost_jll v1.79.0+3 [4611771a] + brotli_jll v1.2.0+0 [c4b69c83] + dlfcn_win32_jll v1.4.2+0 [477f73a3] + libaec_jll v1.1.4+0 [a4ae2306] + libaom_jll v3.13.1+0 [0ac62f75] + libass_jll v0.17.4+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [06c338fa] + libgeotiff_jll v100.702.400+0 [b53b4c65] + libpng_jll v1.6.54+0 [075b6546] + libsixel_jll v1.10.5+0 [f27f6e37] + libvorbis_jll v1.3.8+0 [c5f90fcd] + libwebp_jll v1.6.0+0 [337d8026] + libzip_jll v1.11.3+0 [fe1e1685] + snappy_jll v1.2.3+0 ⌅ [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 14.72s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/h9a3r/src/julia-1.13/activate_set.jl:78 Precompiling package dependencies... Precompiling packages... 5550.3 ms ✓ WhereTheWaterFlows 1118.2 ms ✓ FilePaths → FilePathsGlobExt ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/0e25413977e1aa52abfecdd2bee850e964b8d477/lib/libproj.so" libsqlite3.so.0: cannot open shared object file: No such file or directory Stacktrace:  [1] #dlopen#3  @ ./libdl.jl:120 [inlined]  [2] dlopen(s::String, flags::UInt32)  @ Base.Libc.Libdl ./libdl.jl:119  [3] top-level scope  @ ~/.julia/packages/PROJ_jll/lq5nt/src/wrappers/x86_64-linux-gnu-cxx11.jl:50  [4] macro expansion  @ ~/.julia/packages/JLLWrappers/m2Pjh/src/products/library_generators.jl:63 [inlined]  [5] run_module_init(mod::Module, i::Int64)  @ Base ./loading.jl:1607  [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)  @ Base ./loading.jl:1595  [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)  @ Base ./loading.jl:1483  [8] _include_from_serialized  @ ./loading.jl:1440 [inlined]  [9] _require_search_from_serialized(pkg::Base.PkgId, sourcespec::Base.PkgLoadSpec, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2315  [10] _require_search_from_serialized  @ ./loading.jl:2209 [inlined]  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2866  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2725  [13] macro expansion  @ ./loading.jl:2653 [inlined]  [14] macro expansion  @ ./lock.jl:376 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2617  [16] require  @ ./loading.jl:2593 [inlined]  [17] eval_import_path  @ ./module.jl:36 [inlined]  [18] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [19] _eval_using  @ ./module.jl:137 [inlined]  [20] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [21] top-level scope  @ ~/.julia/packages/libgeotiff_jll/yV3Si/src/wrappers/x86_64-linux-gnu.jl:7  [22] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [23] top-level scope  @ ~/.julia/packages/JLLWrappers/m2Pjh/src/toplevel_generators.jl:199  [24] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [25] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3308  [26] top-level scope  @ stdin:5  [27] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [28] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3150  [29] include_string  @ ./loading.jl:3160 [inlined]  [30] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [31] _start()  @ Base ./client.jl:585 during initialization of module PROJ_jll in expression starting at /home/pkgeval/.julia/packages/libgeotiff_jll/yV3Si/src/wrappers/x86_64-linux-gnu.jl:7 in expression starting at /home/pkgeval/.julia/packages/libgeotiff_jll/yV3Si/src/libgeotiff_jll.jl:2 in expression starting at stdin:5 ✗ libgeotiff_jll 5125.8 ms ✓ MPICH_jll 1381.1 ms ✓ Thrift_jll 1874.7 ms ✓ ReadVTK 77568.6 ms ✓ GeoParams → GeoParamsMakieExt 10868.4 ms ✓ MPI 5523.5 ms ✓ HDF5_jll 5258.5 ms ✓ SCALAPACK32_jll 1377.0 ms ✓ Arrow_jll 5428.1 ms ✓ NetCDF_jll 5398.2 ms ✓ PETSc_jll 15810.3 ms ✓ NCDatasets ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/0e25413977e1aa52abfecdd2bee850e964b8d477/lib/libproj.so" libsqlite3.so.0: cannot open shared object file: No such file or directory Stacktrace:  [1] #dlopen#3  @ ./libdl.jl:120 [inlined]  [2] dlopen(s::String, flags::UInt32)  @ Base.Libc.Libdl ./libdl.jl:119  [3] top-level scope  @ ~/.julia/packages/PROJ_jll/lq5nt/src/wrappers/x86_64-linux-gnu-cxx11.jl:50  [4] macro expansion  @ ~/.julia/packages/JLLWrappers/m2Pjh/src/products/library_generators.jl:63 [inlined]  [5] run_module_init(mod::Module, i::Int64)  @ Base ./loading.jl:1607  [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)  @ Base ./loading.jl:1595  [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)  @ Base ./loading.jl:1483  [8] _include_from_serialized  @ ./loading.jl:1440 [inlined]  [9] _require_search_from_serialized(pkg::Base.PkgId, sourcespec::Base.PkgLoadSpec, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2315  [10] _require_search_from_serialized  @ ./loading.jl:2209 [inlined]  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2866  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2725  [13] macro expansion  @ ./loading.jl:2653 [inlined]  [14] macro expansion  @ ./lock.jl:376 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2617  [16] require  @ ./loading.jl:2593 [inlined]  [17] eval_import_path  @ ./module.jl:36 [inlined]  [18] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [19] _eval_using  @ ./module.jl:137 [inlined]  [20] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [21] top-level scope  @ ~/.julia/packages/GDAL_jll/fyGA8/src/wrappers/x86_64-linux-gnu-cxx11.jl:17  [22] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [23] top-level scope  @ ~/.julia/packages/JLLWrappers/m2Pjh/src/toplevel_generators.jl:199  [24] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [25] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3308  [26] top-level scope  @ stdin:5  [27] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [28] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3150  [29] include_string  @ ./loading.jl:3160 [inlined]  [30] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [31] _start()  @ Base ./client.jl:585 during initialization of module PROJ_jll in expression starting at /home/pkgeval/.julia/packages/GDAL_jll/fyGA8/src/wrappers/x86_64-linux-gnu-cxx11.jl:17 in expression starting at /home/pkgeval/.julia/packages/GDAL_jll/fyGA8/src/GDAL_jll.jl:2 in expression starting at stdin:5 ✗ GDAL_jll 5445.4 ms ✓ LaMEM_jll 6973.9 ms ✓ NCDatasets → NCDatasetsMPIExt 29348.6 ms ✓ GeophysicalModelGenerator WARNING: Method definition piece(ReadVTK.VTKFile) in module ReadVTK at /home/pkgeval/.julia/packages/ReadVTK/cMvIT/src/ReadVTK.jl:186 overwritten in module IO_functions at /home/pkgeval/.julia/packages/LaMEM/hssJ1/src/read_timestep.jl:279. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 21446.2 ms ? LaMEM ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("2e889f3d-35ce-4a77-8ea2-858aecb630f7"), "LaMEM") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2873  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2725  [4] macro expansion  @ ./loading.jl:2653 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2617  [7] require  @ ./loading.jl:2593 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base ./module.jl:101  [11] top-level scope  @ ~/.julia/packages/LaMEM/hssJ1/ext/PlotsExt.jl:5  [12] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3308  [14] top-level scope  @ stdin:5  [15] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3150  [17] include_string  @ ./loading.jl:3160 [inlined]  [18] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [19] _start()  @ Base ./client.jl:585 in expression starting at /home/pkgeval/.julia/packages/LaMEM/hssJ1/ext/PlotsExt.jl:1 in expression starting at stdin:5 ✗ LaMEM → PlotsExt 16 dependencies successfully precompiled in 268 seconds. 422 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 1 dependency had output during precompilation: ┌ LaMEM │ WARNING: Method definition piece(ReadVTK.VTKFile) in module ReadVTK at /home/pkgeval/.julia/packages/ReadVTK/cMvIT/src/ReadVTK.jl:186 overwritten in module IO_functions at /home/pkgeval/.julia/packages/LaMEM/hssJ1/src/read_timestep.jl:279. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ Precompilation completed after 297.9s ################################################################################ # Testing # Testing LaMEM Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_G2S4hu/Project.toml` [13f3f980] + CairoMakie v0.15.8 [2e889f3d] + LaMEM v0.4.8 [91a5bcdd] + Plots v1.41.4 Updating `/tmp/jl_G2S4hu/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [35492f91] + AdaptivePredicates v1.2.0 [27a7e980] + Animations v0.4.2 [67c07d97] + Automa v1.1.0 [18cc8868] + BaseDirs v1.3.2 [d1d4a3ce] + BitFlags v0.1.9 [96374032] + CRlibm v1.0.2 [159f3aea] + Cairo v1.1.1 [13f3f980] + CairoMakie v0.15.8 [a2cac450] + ColorBrewer v0.4.2 [35d6a980] + ColorSchemes v3.31.0 [95dc2771] + ComputePipeline v0.1.6 [f0e56b4a] + ConcurrentUtilities v2.5.0 [d38c429a] + Contour v0.6.3 [e2d170a0] + DataValueInterfaces v1.0.0 [927a84f5] + DelaunayTriangulation v1.6.6 [31c24e10] + Distributions v0.25.123 [4e289a0a] + EnumX v1.0.5 [429591f6] + ExactPredicates v2.2.9 [460bff9d] + ExceptionUnwrapping v0.1.11 [b86e33f2] + FFTA v0.3.1 [8fc22ac5] + FilePaths v0.9.0 [48062228] + FilePathsBase v0.9.24 [1fa38f19] + Format v1.3.7 [b38be410] + FreeType v4.1.1 [663a7486] + FreeTypeAbstraction v0.10.8 [28b8d3ca] + GR v0.73.20 [a2bd30eb] + Graphics v1.1.3 [3955a311] + GridLayoutBase v0.11.2 [42e2da0e] + Grisu v1.0.2 [cd3eb016] + HTTP v1.10.19 [18e54dd8] + IntegerMathUtils v0.1.3 [d1acc4aa] + IntervalArithmetic v1.0.2 [f1662d9f] + Isoband v0.1.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [1019f520] + JLFzf v0.1.11 [682c06a0] + JSON v1.4.0 [5ab0869b] + KernelDensity v0.6.11 [2e889f3d] + LaMEM v0.4.8 [23fbe1c1] + Latexify v0.16.10 [e6f89c97] + LoggingExtras v1.2.0 [ee78f7c6] + Makie v0.24.8 [0a4f8689] + MathTeXEngine v0.6.7 [739be429] + MbedTLS v1.1.9 [442fdcdd] + Measures v0.3.3 [510215fc] + Observables v0.5.5 [4d8831e6] + OpenSSL v1.6.1 [90014a1f] + PDMats v0.11.37 [19eb6ba3] + Packing v0.5.1 [69de0a69] + Parsers v2.8.3 [ccf2f8ad] + PlotThemes v3.3.0 [995b91a9] + PlotUtils v1.4.4 [91a5bcdd] + Plots v1.41.4 [647866c9] + PolygonOps v0.1.2 [27ebfcd6] + Primes v0.5.7 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [01d81517] + RecipesPipeline v0.6.12 [05181044] + RelocatableFolders v1.0.1 [5eaf0fd0] + RoundingEmulator v0.2.1 [6c6a2e73] + Scratch v1.3.0 [65257c39] + ShaderAbstractions v0.5.0 [992d4aef] + Showoff v1.0.3 [73760f76] + SignedDistanceFields v0.4.1 [777ac1f9] + SimpleBufferStream v1.2.0 [860ef19b] + StableRNGs v1.0.4 [09ab397b] + StructArrays v0.7.2 [ec057cc2] + StructUtils v2.6.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [981d1d27] + TriplotBase v0.1.0 [5c2747f8] + URIs v1.6.1 [1cfade01] + UnicodeFun v0.4.1 [41fe7b60] + Unzip v0.2.0 ⌃ [ea906314] ↓ WhereTheWaterFlows v0.11.1 ⇒ v0.10.2 [4e9b3aee] + CRlibm_jll v1.0.1+0 [ee1fde0b] + Dbus_jll v1.16.2+0 [2702e6a9] + EpollShim_jll v0.0.20230411+1 [0656b61e] + GLFW_jll v3.4.1+0 [d2c73de3] + GR_jll v0.73.20+0 [61579ee1] + Ghostscript_jll v9.55.1+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [6cdc7f73] + OpenBLASConsistentFPCSR_jll v0.3.29+0 [36c8627f] + Pango_jll v1.57.0+0 [c0090381] + Qt6Base_jll v6.8.2+2 [629bc702] + Qt6Declarative_jll v6.8.2+1 [ce943373] + Qt6ShaderTools_jll v6.8.2+1 [e99dba38] + Qt6Wayland_jll v6.8.2+2 [a44049a8] + Vulkan_Loader_jll v1.3.243+0 [a2964d1f] + Wayland_jll v1.24.0+0 [f67eecfb] + Xorg_libICE_jll v1.1.2+0 [c834827a] + Xorg_libSM_jll v1.2.6+0 [935fb764] + Xorg_libXcursor_jll v1.2.4+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] + Xorg_libXi_jll v1.8.3+0 [d1454406] + Xorg_libXinerama_jll v1.1.6+0 [ec84b674] + Xorg_libXrandr_jll v1.5.5+0 [cc61e674] + Xorg_libxkbfile_jll v1.1.3+0 [e920d4aa] + Xorg_xcb_util_cursor_jll v0.1.6+0 [12413925] + Xorg_xcb_util_image_jll v0.4.1+0 [2def613f] + Xorg_xcb_util_jll v0.4.1+0 [975044d2] + Xorg_xcb_util_keysyms_jll v0.4.1+0 [0d47668e] + Xorg_xcb_util_renderutil_jll v0.3.10+0 [c22f9ab0] + Xorg_xcb_util_wm_jll v0.4.2+0 [35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.44.0+0 [35ca27e7] + eudev_jll v3.2.14+0 [214eeab7] + fzf_jll v0.61.1+0 [9a68df92] + isoband_jll v0.2.3+0 [1183f4f0] + libdecor_jll v0.2.2+0 [2db6ffa8] + libevdev_jll v1.13.4+0 [36db933b] + libinput_jll v1.28.1+0 [009596ad] + mtdev_jll v1.1.7+0 [d8fb68d0] + xkbcommon_jll v1.13.0+0 [8bf52ea8] + CRC32c v1.11.0 [4607b0f0] + SuiteSparse Info Packages marked with ⌃ have new versions available and may be upgradable. Test Successfully re-resolved Status `/tmp/jl_G2S4hu/Project.toml` [13f3f980] CairoMakie v0.15.8 [8bb1440f] DelimitedFiles v1.9.1 [ffbed154] DocStringExtensions v0.9.5 [e018b62d] GeoParams v0.7.9 [3700c31b] GeophysicalModelGenerator v0.7.16 ⌅ [c27321d9] Glob v1.3.1 [a98d9a8b] Interpolations v0.16.2 [2e889f3d] LaMEM v0.4.8 [9c8b4983] LightXML v0.9.3 [da04e1cc] MPI v0.20.23 [3da0fdf6] MPIPreferences v0.1.11 [91a5bcdd] Plots v1.41.4 [dc215faf] ReadVTK v0.2.5 [10745b16] Statistics v1.11.1 [64499a7a] WriteVTK v1.21.2 ⌅ [15d6fa20] LaMEM_jll v2.1.4+0 ⌅ [7cb0a576] MPICH_jll v4.1.2+1 [8dfed614] Test v1.11.0 Status `/tmp/jl_G2S4hu/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.4.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [18cc8868] BaseDirs v1.3.2 [7b0aa2c9] BibTeX v0.1.0 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 [179af706] CFTime v0.2.5 [96374032] CRlibm v1.0.2 [159f3aea] Cairo v1.1.1 [13f3f980] CairoMakie v0.15.8 [d360d2e6] ChainRulesCore v1.26.0 [0b6fb165] ChunkCodecCore v1.0.1 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.2 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [1fbeeb36] CommonDataModel v0.4.2 [38540f10] CommonSolve v0.2.6 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [95dc2771] ComputePipeline v0.1.6 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [150eb455] CoordinateTransformations v0.6.4 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [927a84f5] DelaunayTriangulation v1.6.6 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [3c3547ce] DiskArrays v0.4.18 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [429591f6] ExactPredicates v2.2.9 [460bff9d] ExceptionUnwrapping v0.1.11 [411431e0] Extents v0.1.6 [c87230d0] FFMPEG v0.4.5 [b86e33f2] FFTA v0.3.1 [5789e2e9] FileIO v1.17.1 [8fc22ac5] FilePaths v0.9.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.3.1 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.8 [28b8d3ca] GR v0.73.20 [e018b62d] GeoParams v0.7.9 [0ef565a4] Geodesy v1.2.0 [5c1252a2] GeometryBasics v0.5.10 [3700c31b] GeophysicalModelGenerator v0.7.16 ⌅ [c27321d9] Glob v1.3.1 [a2bd30eb] Graphics v1.1.3 [3955a311] GridLayoutBase v0.11.2 [42e2da0e] Grisu v1.0.2 [cd3eb016] HTTP v1.10.19 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [18e54dd8] IntegerMathUtils v0.1.3 [7d512f48] InternedStrings v0.7.0 [a98d9a8b] Interpolations v0.16.2 [d1acc4aa] IntervalArithmetic v1.0.2 [8197267c] IntervalSets v0.7.13 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.6.3 [1019f520] JLFzf v0.1.11 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.4.0 [b835a17e] JpegTurbo v0.1.6 [5ab0869b] KernelDensity v0.6.11 [49dc5b4e] KernelDensitySJ v0.2.2 [8ac3fa9e] LRUCache v1.6.2 [2e889f3d] LaMEM v0.4.8 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.10 [8cdb02fc] LazyModules v0.3.1 [9c8b4983] LightXML v0.9.3 [4345ca2d] Loess v0.6.5 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [da04e1cc] MPI v0.20.23 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [ee78f7c6] Makie v0.24.8 [dbb5928d] MappedArrays v0.4.3 [0a4f8689] MathTeXEngine v0.6.7 [739be429] MbedTLS v1.1.9 [442fdcdd] Measures v0.3.3 [7269a6da] MeshIO v0.5.3 [e1d29d7a] Missings v1.2.0 [e94cdb99] MosaicViews v0.3.4 [46d2c3a1] MuladdMacro v0.2.4 [85f8d34a] NCDatasets v0.14.10 [77ba4419] NaNMath v1.1.3 [b8a86587] NearestNeighbors v0.4.26 [f09324ee] Netpbm v1.1.1 [510215fc] Observables v0.5.5 [6fe1bfb0] OffsetArrays v1.17.0 [52e1d378] OpenEXR v0.3.3 [4d8831e6] OpenSSL v1.6.1 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [f57f5aa1] PNGFiles v0.4.4 [19eb6ba3] Packing v0.5.1 [5432bcbf] PaddedViews v0.5.12 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [eebad327] PkgVersion v0.3.3 [ccf2f8ad] PlotThemes v3.3.0 [995b91a9] PlotUtils v1.4.4 [91a5bcdd] Plots v1.41.4 [647866c9] PolygonOps v0.1.2 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [27ebfcd6] Primes v0.5.7 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [4b34888f] QOI v1.0.2 [1fd47b50] QuadGK v2.11.2 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [dc215faf] ReadVTK v0.2.5 [3cdcf5f2] RecipesBase v1.3.4 [01d81517] RecipesPipeline v0.6.12 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [f2b01f46] Roots v2.2.10 [5eaf0fd0] RoundingEmulator v0.2.1 [fdea26ae] SIMD v3.7.2 [431bcebd] SciMLPublic v1.0.1 [7e506255] ScopedValues v1.5.0 [6c6a2e73] Scratch v1.3.0 [efcf1570] Setfield v1.1.2 [65257c39] ShaderAbstractions v0.5.0 [992d4aef] Showoff v1.0.3 [73760f76] SignedDistanceFields v0.4.1 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.5 [45858cf5] Sixel v0.1.5 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [860ef19b] StableRNGs v1.0.4 [cae243ae] StackViews v0.1.2 [aedffcd0] Static v1.3.1 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [09ab397b] StructArrays v0.7.2 [ec057cc2] StructUtils v2.6.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [731e570b] TiffImages v0.11.6 [3bb67fe8] TranscodingStreams v0.11.3 [981d1d27] TriplotBase v0.1.0 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [1cfade01] UnicodeFun v0.4.1 [967fb449] Unidecode v1.2.0 [1986cc42] Unitful v1.27.0 [41fe7b60] Unzip v0.2.0 [4004b06d] VTKBase v1.0.1 [e3aaa7dc] WebP v0.1.3 ⌃ [ea906314] WhereTheWaterFlows v0.10.2 [efce3f68] WoodburyMatrices v1.1.0 [64499a7a] WriteVTK v1.21.2 ⌅ [8ce61222] Arrow_jll v18.1.1+0 [0b7ba130] Blosc_jll v1.21.7+0 [6e34b625] Bzip2_jll v1.0.9+0 [4e9b3aee] CRlibm_jll v1.0.1+0 [83423d85] Cairo_jll v1.18.5+0 [ee1fde0b] Dbus_jll v1.16.2+0 [5ae413db] EarCut_jll v2.2.4+0 [2702e6a9] EpollShim_jll v0.0.20230411+1 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[29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/0e25413977e1aa52abfecdd2bee850e964b8d477/lib/libproj.so" libsqlite3.so.0: cannot open shared object file: No such file or directory Stacktrace:  [1] #dlopen#3  @ ./libdl.jl:120 [inlined]  [2] dlopen(s::String, flags::UInt32)  @ Base.Libc.Libdl ./libdl.jl:119  [3] top-level scope  @ ~/.julia/packages/PROJ_jll/lq5nt/src/wrappers/x86_64-linux-gnu-cxx11.jl:50  [4] macro expansion  @ ~/.julia/packages/JLLWrappers/m2Pjh/src/products/library_generators.jl:63 [inlined]  [5] run_module_init(mod::Module, i::Int64)  @ Base ./loading.jl:1607  [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)  @ Base ./loading.jl:1595  [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)  @ Base ./loading.jl:1483  [8] _include_from_serialized  @ ./loading.jl:1440 [inlined]  [9] _require_search_from_serialized(pkg::Base.PkgId, sourcespec::Base.PkgLoadSpec, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2315  [10] _require_search_from_serialized  @ ./loading.jl:2209 [inlined]  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2866  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2725  [13] macro expansion  @ ./loading.jl:2653 [inlined]  [14] macro expansion  @ ./lock.jl:376 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2617  [16] require  @ ./loading.jl:2593 [inlined]  [17] eval_import_path  @ ./module.jl:36 [inlined]  [18] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [19] _eval_using  @ ./module.jl:137 [inlined]  [20] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [21] top-level scope  @ ~/.julia/packages/libgeotiff_jll/yV3Si/src/wrappers/x86_64-linux-gnu.jl:7  [22] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [23] top-level scope  @ ~/.julia/packages/JLLWrappers/m2Pjh/src/toplevel_generators.jl:199  [24] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [25] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3308  [26] top-level scope  @ stdin:5  [27] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [28] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3150  [29] include_string  @ ./loading.jl:3160 [inlined]  [30] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [31] _start()  @ Base ./client.jl:585 during initialization of module PROJ_jll in expression starting at /home/pkgeval/.julia/packages/libgeotiff_jll/yV3Si/src/wrappers/x86_64-linux-gnu.jl:7 in expression starting at /home/pkgeval/.julia/packages/libgeotiff_jll/yV3Si/src/libgeotiff_jll.jl:2 in expression starting at stdin:5 ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/0e25413977e1aa52abfecdd2bee850e964b8d477/lib/libproj.so" libsqlite3.so.0: cannot open shared object file: No such file or directory Stacktrace:  [1] #dlopen#3  @ ./libdl.jl:120 [inlined]  [2] dlopen(s::String, flags::UInt32)  @ Base.Libc.Libdl ./libdl.jl:119  [3] top-level scope  @ ~/.julia/packages/PROJ_jll/lq5nt/src/wrappers/x86_64-linux-gnu-cxx11.jl:50  [4] macro expansion  @ ~/.julia/packages/JLLWrappers/m2Pjh/src/products/library_generators.jl:63 [inlined]  [5] run_module_init(mod::Module, i::Int64)  @ Base ./loading.jl:1607  [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)  @ Base ./loading.jl:1595  [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)  @ Base ./loading.jl:1483  [8] _include_from_serialized  @ ./loading.jl:1440 [inlined]  [9] _require_search_from_serialized(pkg::Base.PkgId, sourcespec::Base.PkgLoadSpec, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2315  [10] _require_search_from_serialized  @ ./loading.jl:2209 [inlined]  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2866  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2725  [13] macro expansion  @ ./loading.jl:2653 [inlined]  [14] macro expansion  @ ./lock.jl:376 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2617  [16] require  @ ./loading.jl:2593 [inlined]  [17] eval_import_path  @ ./module.jl:36 [inlined]  [18] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [19] _eval_using  @ ./module.jl:137 [inlined]  [20] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [21] top-level scope  @ ~/.julia/packages/GDAL_jll/fyGA8/src/wrappers/x86_64-linux-gnu-cxx11.jl:17  [22] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [23] top-level scope  @ ~/.julia/packages/JLLWrappers/m2Pjh/src/toplevel_generators.jl:199  [24] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [25] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3308  [26] top-level scope  @ stdin:5  [27] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [28] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3150  [29] include_string  @ ./loading.jl:3160 [inlined]  [30] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [31] _start()  @ Base ./client.jl:585 during initialization of module PROJ_jll in expression starting at /home/pkgeval/.julia/packages/GDAL_jll/fyGA8/src/wrappers/x86_64-linux-gnu-cxx11.jl:17 in expression starting at /home/pkgeval/.julia/packages/GDAL_jll/fyGA8/src/GDAL_jll.jl:2 in expression starting at stdin:5 WARNING: Method definition piece(ReadVTK.VTKFile) in module ReadVTK at /home/pkgeval/.julia/packages/ReadVTK/cMvIT/src/ReadVTK.jl:186 overwritten in module IO_functions at /home/pkgeval/.julia/packages/LaMEM/hssJ1/src/read_timestep.jl:279. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 1 dependency had output during precompilation: ┌ LaMEM │ [Output was shown above] └ WARNING: Method definition piece(ReadVTK.VTKFile) in module ReadVTK at /home/pkgeval/.julia/packages/ReadVTK/cMvIT/src/ReadVTK.jl:186 overwritten in module IO_functions at /home/pkgeval/.julia/packages/LaMEM/hssJ1/src/read_timestep.jl:279. Saved file: Model3D.vts Julia setup: Error During Test at /home/pkgeval/.julia/packages/LaMEM/hssJ1/test/test_julia_setups.jl:6 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/hssJ1/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [12] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [13] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/test_julia_setups.jl:12 [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [15] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/test_julia_setups.jl:26 [inlined] [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:6 [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:6 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ none:6 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [24] _start() @ Base ./client.jl:585 in expression starting at none:1 Saved file: Model3D.vts velocity box: Error During Test at /home/pkgeval/.julia/packages/LaMEM/hssJ1/test/test_julia_setups.jl:42 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/hssJ1/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [12] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [13] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/test_julia_setups.jl:47 [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [15] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/test_julia_setups.jl:76 [inlined] [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:6 [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:6 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ none:6 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [24] _start() @ Base ./client.jl:585 in expression starting at none:1 Saved file: Model3D.vts phase transitions: Error During Test at /home/pkgeval/.julia/packages/LaMEM/hssJ1/test/test_julia_setups.jl:92 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/hssJ1/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [12] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [13] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/test_julia_setups.jl:96 [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [15] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/test_julia_setups.jl:149 [inlined] [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:6 [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:6 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ none:6 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [24] _start() @ Base ./client.jl:585 in expression starting at none:1 pwd() = "/home/pkgeval/.julia/packages/LaMEM/hssJ1/test/example_1/example_1/example_phase" readdir() = ["Model3D.vts", "output.dat"] Saved file: Model3D.vts phase diagrams: Error During Test at /home/pkgeval/.julia/packages/LaMEM/hssJ1/test/test_julia_setups.jl:164 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/hssJ1/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [12] run_lamem(model::Model) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [13] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/test_julia_setup_phase_diagrams.jl:36 [14] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [15] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/test_julia_setups.jl:166 [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [17] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/test_julia_setups.jl:166 [inlined] [18] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [19] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:6 [20] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [21] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:6 [inlined] [22] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [23] top-level scope @ none:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [26] _start() @ Base ./client.jl:585 in expression starting at none:1 in expression starting at /home/pkgeval/.julia/packages/LaMEM/hssJ1/test/test_julia_setup_phase_diagrams.jl:36 Saved file: Model3D.vts build-in geometries: Error During Test at /home/pkgeval/.julia/packages/LaMEM/hssJ1/test/test_julia_setups.jl:171 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/hssJ1/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [12] run_lamem(model::Model) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [13] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/test_julia_setups.jl:174 [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [15] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/test_julia_setups.jl:187 [inlined] [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:6 [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:6 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ none:6 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [24] _start() @ Base ./client.jl:585 in expression starting at none:1 cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : /home/pkgeval/.julia/packages/LaMEM/hssJ1/test/input_files/FallingBlock_Multigrid.dat Adding PETSc option: -snes_type ksponly Adding PETSc option: -js_ksp_monitor Adding PETSc option: -crs_pc_type bjacobi Finished parsing input file -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [ ] Maximum number of steps : 1 Time step : 10. [ ] Minimum time step : 1e-05 [ ] Maximum time step : 100. [ ] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.5 Output time step : 0.2 [ ] Output every [n] steps : 1 Output [n] initial steps : 1 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [32, 32, 32] Number of cells : 32768 Number of faces : 101376 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [0., 0., 0.] Upper coordinate bounds [ex, ey, ez] : [1., 1., 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 (dens) : rho = 1. [ ] (diff) : eta = 1. [ ] Bd = 0.5 [ ] Phase ID : 1 (dens) : rho = 2. [ ] (diff) : eta = 100. [ ] Bd = 0.005 [ ] Phase ID : 2 (dens) : rho = 2. [ ] (diff) : eta = 1000. [ ] Bd = 0.0005 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -1.] [ ] Surface stabilization (FSSA) : 1. Use lithostatic pressure for creep @ Minimum viscosity : 0.001 [ ] Maximum viscosity : 1e+12 [ ] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : geometric primitives Velocity interpolation scheme : empirical STAGP (STAG + pressure points) Marker control type : pure AVD for all control volumes Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise Background phase ID : 0 Interpolation constant : 0.7 -------------------------------------------------------------------------- Reading geometric primitives ... done (0.0195859 sec) -------------------------------------------------------------------------- Output parameters: Output file name : FB_multigrid Write .pvd file : yes Phase @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Deviatoric stress second invariant @ Deviatoric strain rate tensor @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- AVD output parameters: Write .pvd file : yes AVD refinement factor : 3 -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Preconditioner type : coupled Galerkin geometric multigrid Global coarse grid [nx,ny,nz] : [4, 4, 4] Local coarse grid [nx,ny,nz] : [4, 4, 4] Number of multigrid levels : 4 -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : multigrid Multigrid smoother levels KSP : chebyshev Multigrid smoother levels PC : sor Number of smoothening steps : 10 Coarse level KSP : preonly Coarse level PC : bjacobi -------------------------------------------------------------------------- Saving output ... done (0.820444 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [ ] Tentative time step : 10.00000000 [ ] -------------------------------------------------------------------------- 0 SNES Function norm 1.832203177398e+02 0 PICARD ||F||/||F0||=1.000000e+00 Residual norms for js_ solve. 0 KSP Residual norm 2.121468833494e+01 1 KSP Residual norm 2.007312746141e+01 2 KSP Residual norm 1.436721786209e+01 3 KSP Residual norm 7.031413261028e+00 4 KSP Residual norm 2.361866279194e+00 5 KSP Residual norm 1.011785314253e+00 6 KSP Residual norm 4.700182839567e-01 7 KSP Residual norm 3.431392417306e-01 8 KSP Residual norm 1.759675422301e-01 9 KSP Residual norm 1.053716068647e-01 10 KSP Residual norm 9.342460424411e-02 11 KSP Residual norm 7.749792924243e-02 12 KSP Residual norm 5.192767141878e-02 13 KSP Residual norm 3.842800827033e-02 14 KSP Residual norm 1.589386132911e-02 15 KSP Residual norm 8.851034636242e-03 16 KSP Residual norm 4.554700539865e-03 17 KSP Residual norm 2.632601842348e-03 18 KSP Residual norm 1.311043982030e-03 19 KSP Residual norm 6.462411319589e-04 20 KSP Residual norm 3.583024905386e-04 21 KSP Residual norm 1.510300556884e-04 Linear js_ solve converged due to CONVERGED_RTOL iterations 21 1 SNES Function norm 1.371165827605e-02 -------------------------------------------------------------------------- SNES Convergence Reason : maximum iterations reached Number of iterations : 1 SNES solution time : 6.74364 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.351162529297e-05 |Div|_2 = 1.404433474462e-04 Momentum: |mRes|_2 = 1.371093900305e-02 -------------------------------------------------------------------------- Actual time step : 6.73129 [ ] -------------------------------------------------------------------------- Marker control [0]: (AVD YZED) injected 5 markers and deleted 0 markers in 1.2764e-03 s Marker control [0]: (AVD XZED) injected 7 markers and deleted 0 markers in 1.4786e-03 s Marker control [0]: (AVD XYED) injected 10 markers and deleted 0 markers in 1.9757e-03 s -------------------------------------------------------------------------- Saving output ... done (1.1169 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 10.5584 (sec) -------------------------------------------------------------------------- cores_compute = 4 Falling Block test on 4 cores failed cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : /home/pkgeval/.julia/packages/LaMEM/hssJ1/test/input_files/FallingBlock_DirectSolver.dat Adding PETSc option: -snes_type ksponly Adding PETSc option: -js_ksp_monitor Finished parsing input file -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [ ] Maximum number of steps : 2 Time step : 10. [ ] Minimum time step : 1e-05 [ ] Maximum time step : 100. [ ] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.5 Output time step : 0.2 [ ] Output every [n] steps : 1000 Output [n] initial steps : 1 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [16, 16, 16] Number of cells : 4096 Number of faces : 13056 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [0., 0., 0.] Upper coordinate bounds [ex, ey, ez] : [1., 1., 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 (dens) : rho = 1. [ ] (diff) : eta = 1. [ ] Bd = 0.5 [ ] Phase ID : 1 (dens) : rho = 2. [ ] (diff) : eta = 100. [ ] Bd = 0.005 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -1.] [ ] Surface stabilization (FSSA) : 1. Use lithostatic pressure for creep @ Minimum viscosity : 0.001 [ ] Maximum viscosity : 1e+12 [ ] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : geometric primitives Velocity interpolation scheme : empirical STAGP (STAG + pressure points) Marker control type : pure AVD for all control volumes Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise Background phase ID : 0 Interpolation constant : 0.7 -------------------------------------------------------------------------- Reading geometric primitives ... done (0.00255606 sec) -------------------------------------------------------------------------- Output parameters: Output file name : FB_direct Write .pvd file : yes Phase @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ -------------------------------------------------------------------------- AVD output parameters: Write .pvd file : yes AVD refinement factor : 3 -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+03 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- Saving output ... done (0.100068 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [ ] Tentative time step : 10.00000000 [ ] -------------------------------------------------------------------------- 0 SNES Function norm 7.310266752999e+01 0 PICARD ||F||/||F0||=1.000000e+00 Residual norms for js_ solve. 0 KSP Residual norm 2.133540043787e+01 1 KSP Residual norm 1.859427686320e-02 2 KSP Residual norm 2.899733401244e-05 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.649877042896e-04 -------------------------------------------------------------------------- SNES Convergence Reason : maximum iterations reached Number of iterations : 1 SNES solution time : 2.40824 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.056315829386e-06 |Div|_2 = 3.650679845667e-05 Momentum: |mRes|_2 = 1.608980926960e-04 -------------------------------------------------------------------------- Actual time step : 7.69851 [ ] -------------------------------------------------------------------------- Marker control [0]: (AVD CELL) injected 1 markers and deleted 0 markers in 3.0914e-04 s Marker control [0]: (AVD YZED) injected 6 markers and deleted 0 markers in 1.0781e-03 s Marker control [0]: (AVD XZED) injected 8 markers and deleted 0 markers in 1.6666e-03 s Marker control [0]: (AVD XYED) injected 2 markers and deleted 0 markers in 4.7257e-04 s -------------------------------------------------------------------------- Saving output ... done (0.130969 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 7.69851107 [ ] Tentative time step : 7.69851107 [ ] -------------------------------------------------------------------------- 0 SNES Function norm 1.307661178463e+02 0 PICARD ||F||/||F0||=1.000000e+00 Residual norms for js_ solve. 0 KSP Residual norm 1.189285812726e+00 1 KSP Residual norm 1.071718651319e-03 2 KSP Residual norm 2.121756434235e-06 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.789132168326e-04 -------------------------------------------------------------------------- SNES Convergence Reason : maximum iterations reached Number of iterations : 1 SNES solution time : 2.27661 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 8.594135843254e-08 |Div|_2 = 7.340971818893e-07 Momentum: |mRes|_2 = 5.789127513924e-04 -------------------------------------------------------------------------- Actual time step : 8.25319 [ ] -------------------------------------------------------------------------- Marker control [0]: (AVD YZED) injected 5 markers and deleted 0 markers in 7.9908e-04 s Marker control [0]: (AVD XZED) injected 4 markers and deleted 0 markers in 6.4655e-04 s Marker control [0]: (AVD XYED) injected 7 markers and deleted 0 markers in 1.0926e-03 s -------------------------------------------------------------------------- Saving output ... done (0.112143 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 5.41714 (sec) -------------------------------------------------------------------------- cores_compute = 2 Fatal error in internal_Init_thread: Other MPI error, error stack: internal_Init_thread(67)...........: MPI_Init_thread(argc=0x7ffe7e65a3fc, argv=0x7ffe7e65a3f0, required=1, provided=0x7ffe7e659fbc) failed MPII_Init_thread(234)..............: MPID_Init(67)......................: init_world(171)....................: channel initialization failed MPIDI_CH3_Init(84).................: MPID_nem_init(314).................: MPID_nem_tcp_init(175).............: MPID_nem_tcp_get_business_card(397): GetSockInterfaceAddr(370)..........: gethostbyname failed, LaMEM-primary-f08nJp4i (errno 1) run LaMEM: Error During Test at /home/pkgeval/.julia/packages/LaMEM/hssJ1/test/runLaMEM.jl:4 Got exception outside of a @test failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/0ed4137b58af5c5e3797cb0c400e60ed7c308bae/bin/mpiexec -n 2 /home/pkgeval/.julia/artifacts/cd461744844630cc33fbd2e7a8e795b56651d039/bin/LaMEM -ParamFile /home/pkgeval/.julia/packages/LaMEM/hssJ1/test/input_files/FallingBlock_DirectSolver.dat '-nstep_max 5'`,["CI=true", "UCX_MEMTYPE_CACHE=no", "OPENBLAS_NUM_THREADS=1", "OPENBLAS_MAIN_FREE=1", "JULIA_CPU_THREADS=1", "JULIA_LOAD_PATH=@:/tmp/jl_G2S4hu", "FONTCONFIG_FILE=/home/pkgeval/.julia/artifacts/258f7271ca555a7634c0fe8b8508f69334673a89/etc/fonts/fonts.conf", "ZES_ENABLE_SYSMAN=1", "PYTHON=", "R_HOME=*", "JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "UCX_ERROR_SIGNALS=SIGILL,SIGBUS,SIGFPE", "JULIA_PKG_PRECOMPILE_AUTO=0", "FONTCONFIG_PATH=/home/pkgeval/.julia/artifacts/258f7271ca555a7634c0fe8b8508f69334673a89/etc/fonts", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/home/pkgeval/.julia/artifacts/e83428c736a7117825caecd465ca39de72e835b8/lib:/home/pkgeval/.julia/artifacts/0ed4137b58af5c5e3797cb0c400e60ed7c308bae/lib:/home/pkgeval/.julia/artifacts/0a6a41be79ef85f32aa7d8529d4aebf9ef8ab030/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_real_Int64/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/single_complex_Int32/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/single_complex_Int64/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/single_real_Int32/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/single_real_Int64/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_complex_Int32/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_complex_Int64/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_real_Int32/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_real_Int64_deb/lib:/home/pkgeval/.julia/artifacts/cd461744844630cc33fbd2e7a8e795b56651d039/lib:/opt/julia/bin/../lib/julia:/opt/julia/bin/../lib:/opt/julia/bin/../lib/julia:/home/pkgeval/.julia/artifacts/0ed4137b58af5c5e3797cb0c400e60ed7c308bae/lib:/opt/julia/bin/../lib/julia:/opt/julia/bin/../lib", "HOME=/home/pkgeval", "JULIA_PKGEVAL=true", "OMP_NUM_THREADS=1", "JULIA_NUM_THREADS=1", "VECLIB_MAXIMUM_THREADS=1", "PATH=/home/pkgeval/.julia/artifacts/0ed4137b58af5c5e3797cb0c400e60ed7c308bae/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/opt/julia/bin", "DISPLAY=:1", "PKGEVAL=true", "LANG=C.UTF-8"]), ProcessExited(15)) [15] Stacktrace: [1] pipeline_error @ ./process.jl:610 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:525 [3] run @ ./process.jl:522 [inlined] [4] run_lamem(ParamFile::String, cores::Int64, args::String; wait::Bool, deactivate_multithreads::Bool) @ LaMEM.Run ~/.julia/packages/LaMEM/hssJ1/src/run_lamem.jl:0 [5] run_lamem(ParamFile::String, cores::Int64, args::String) @ LaMEM.Run ~/.julia/packages/LaMEM/hssJ1/src/run_lamem.jl:50 [6] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/runLaMEM.jl:7 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [8] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/runLaMEM.jl:36 [inlined] [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [10] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:6 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [12] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:7 [inlined] [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [14] top-level scope @ none:6 [15] eval(m::Module, e::Any) @ Core ./boot.jl:489 [16] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [17] _start() @ Base ./client.jl:585 Saved file: test_data.vts Saved file: test_data_phase.vts read LaMEM output: Error During Test at /home/pkgeval/.julia/packages/LaMEM/hssJ1/test/read_timestep.jl:5 Got exception outside of a @test SystemError: opening file "/home/pkgeval/.julia/packages/LaMEM/hssJ1/test/example_1/example_1/example_phase/example_2/example_1/PlumeLithosphereInteraction_passive_tracers.pvd": No such file or directory Stacktrace: [1] systemerror(p::String, errno::Int32; extrainfo::Nothing) @ Base ./error.jl:186 [2] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Nothing, append::Nothing) @ Base ./iostream.jl:327 [3] open @ ./iostream.jl:306 [inlined] [4] open(f::Base.var"#350#351"{@Kwargs{}}, args::String; kwargs::@Kwargs{}) @ Base ./io.jl:425 [5] open @ ./io.jl:424 [inlined] [6] #readlines#348 @ ./io.jl:720 [inlined] [7] readlines @ ./io.jl:719 [inlined] [8] readPVD(FileName::String) @ LaMEM.IO_functions ~/.julia/packages/LaMEM/hssJ1/src/read_timestep.jl:383 [9] read_LaMEM_simulation(FileName::String, DirName::String; phase::Bool, surf::Bool, passive_tracers::Bool) @ LaMEM.IO_functions ~/.julia/packages/LaMEM/hssJ1/src/read_timestep.jl:593 [10] read_LaMEM_simulation @ ~/.julia/packages/LaMEM/hssJ1/src/read_timestep.jl:581 [inlined] [11] read_LaMEM_timestep(FileName::String, TimeStep::Int64, DirName::String; fields::Nothing, phase::Bool, surf::Bool, passive_tracers::Bool, last::Bool) @ LaMEM.IO_functions ~/.julia/packages/LaMEM/hssJ1/src/read_timestep.jl:550 [12] read_LaMEM_timestep @ ~/.julia/packages/LaMEM/hssJ1/src/read_timestep.jl:548 [inlined] [13] kwcall(::@NamedTuple{passive_tracers::Bool}, ::typeof(read_LaMEM_timestep), FileName::String, TimeStep::Int64) @ LaMEM.IO_functions ~/.julia/packages/LaMEM/hssJ1/src/read_timestep.jl:548 [14] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/read_timestep.jl:8 [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [16] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/read_timestep.jl:51 [inlined] [17] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [18] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:6 [19] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [20] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:8 [inlined] [21] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [22] top-level scope @ none:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:489 [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [25] _start() @ Base ./client.jl:585 No partitioning file required for 1 core model setup run lamem mode save grid test: Error During Test at /home/pkgeval/.julia/packages/LaMEM/hssJ1/test/run_lamem_save_grid_test.jl:3 Got exception outside of a @test MethodError: no method matching length(::Nothing) The function `length` exists, but no method is defined for this combination of argument types. Closest candidates are: length(!Matched::LaTeXStrings.LaTeXString) @ LaTeXStrings ~/.julia/packages/LaTeXStrings/6NrIG/src/LaTeXStrings.jl:112 length(!Matched::ReadVTK.PVTKFile) @ ReadVTK ~/.julia/packages/ReadVTK/cMvIT/src/ReadVTK.jl:374 length(!Matched::DataStructures.SparseIntSet) @ DataStructures ~/.julia/packages/DataStructures/qUuAY/src/sparse_int_set.jl:61 ... Stacktrace: [1] run_lamem_save_grid(ParamFile::String, cores::Int64; verbose::Bool, directory::String) @ LaMEM.Run ~/.julia/packages/LaMEM/hssJ1/src/run_lamem_save_grid.jl:92 [2] kwcall(::@NamedTuple{directory::String}, ::typeof(run_lamem_save_grid), ParamFile::String, cores::Int64) @ LaMEM.Run ~/.julia/packages/LaMEM/hssJ1/src/run_lamem_save_grid.jl:76 [3] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/run_lamem_save_grid_test.jl:5 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [5] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/run_lamem_save_grid_test.jl:11 [inlined] [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [7] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:6 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [9] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:9 [inlined] [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [11] top-level scope @ none:6 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [14] _start() @ Base ./client.jl:585 Saved file: Model3D.vts Test mesh refinement: Error During Test at /home/pkgeval/.julia/packages/LaMEM/hssJ1/test/mesh_refinement_test.jl:7 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/hssJ1/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [12] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [13] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/mesh_refinement_test.jl:13 [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [15] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/mesh_refinement_test.jl:29 [inlined] [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:6 [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:10 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ none:6 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [24] _start() @ Base ./client.jl:585 in expression starting at none:1 Read logfile: Error During Test at /home/pkgeval/.julia/packages/LaMEM/hssJ1/test/read_logfile.jl:7 Got exception outside of a @test SystemError: opening file "input_files/128_cores_104812.txt": No such file or directory Stacktrace: [1] systemerror(p::String, errno::Int32; extrainfo::Nothing) @ Base ./error.jl:186 [2] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Nothing, append::Nothing) @ Base ./iostream.jl:327 [3] open @ ./iostream.jl:306 [inlined] [4] read_LaMEM_logfile(Filename::String; ID::Nothing, header::Bool) @ LaMEM.Run ~/.julia/packages/LaMEM/hssJ1/src/utils_Run.jl:81 [5] read_LaMEM_logfile(Filename::String) @ LaMEM.Run ~/.julia/packages/LaMEM/hssJ1/src/utils_Run.jl:78 [6] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/read_logfile.jl:9 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [8] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/read_logfile.jl:10 [inlined] [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [10] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:6 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [12] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:11 [inlined] [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [14] top-level scope @ none:6 [15] eval(m::Module, e::Any) @ Core ./boot.jl:489 [16] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [17] _start() @ Base ./client.jl:585 Saved file: Model3D.vts filesize compression: Error During Test at /home/pkgeval/.julia/packages/LaMEM/hssJ1/test/test_compression.jl:6 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/hssJ1/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [12] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [13] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/test_compression.jl:7 [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [15] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/test_compression.jl:23 [inlined] [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:6 [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:12 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ none:6 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [24] _start() @ Base ./client.jl:585 in expression starting at none:1 rheology = Phase 0 (matrix): rho = 3000.0 eta = 1.0e20 ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts GeoParams 0D rheology: Error During Test at /home/pkgeval/.julia/packages/LaMEM/hssJ1/test/test_GeoParams_integration.jl:5 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/hssJ1/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:200 ┌[11] run_lamem │ @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] ╰──── repeated 2 times [13] stress_strainrate_0D(rheology::Phase, ε_vec::Vector{Float64}; n::Int64, T::Int64, nstep_max::Int64, clean::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Utils.jl:467 [14] kwcall(::@NamedTuple{T::Int64, nstep_max::Int64}, ::typeof(stress_strainrate_0D), rheology::Phase, ε_vec::Vector{Float64}) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Utils.jl:450 [15] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/test_GeoParams_integration.jl:7 [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [17] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/test_GeoParams_integration.jl:16 [inlined] [18] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [19] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:6 [20] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [21] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:13 [inlined] [22] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [23] top-level scope @ none:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [26] _start() @ Base ./client.jl:585 in expression starting at none:1 Saved file: Model3D.vts Saved file: Model3D.vts Subduction3D: Error During Test at /home/pkgeval/.julia/packages/LaMEM/hssJ1/test/test_examples.jl:13 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/hssJ1/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [12] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [13] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/example_scripts/Subduction3D.jl:99 [14] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [15] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/test_examples.jl:6 [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [17] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/test_examples.jl:14 [inlined] [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/test_examples.jl:15 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:6 [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [23] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:14 [inlined] [24] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [25] top-level scope @ none:6 [26] eval(m::Module, e::Any) @ Core ./boot.jl:489 [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [28] _start() @ Base ./client.jl:585 in expression starting at none:1 in expression starting at /home/pkgeval/.julia/packages/LaMEM/hssJ1/example_scripts/Subduction3D.jl:91 caused by: LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/hssJ1/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem(model::Model, cores::Int64, args::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [12] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/example_scripts/Subduction3D.jl:94 [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [14] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/test_examples.jl:6 [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [16] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/test_examples.jl:14 [inlined] [17] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [18] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/test_examples.jl:15 [inlined] [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [20] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:6 [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [22] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:14 [inlined] [23] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [24] top-level scope @ none:6 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [27] _start() @ Base ./client.jl:585 in expression starting at none:1 Saved file: Model3D.vts StrengthEnvelop: Error During Test at /home/pkgeval/.julia/packages/LaMEM/hssJ1/test/test_examples.jl:23 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/hssJ1/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [12] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [13] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/example_scripts/StrengthEnvelop.jl:23 [14] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [15] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/test_examples.jl:6 [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [17] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/test_examples.jl:24 [inlined] [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/test_examples.jl:25 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:6 [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [23] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:14 [inlined] [24] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [25] top-level scope @ none:6 [26] eval(m::Module, e::Any) @ Core ./boot.jl:489 [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [28] _start() @ Base ./client.jl:585 in expression starting at none:1 in expression starting at /home/pkgeval/.julia/packages/LaMEM/hssJ1/example_scripts/StrengthEnvelop.jl:23 Saved file: Model3D.vts Saved file: Model3D.vts TM_Subduction_example: Error During Test at /home/pkgeval/.julia/packages/LaMEM/hssJ1/test/test_examples.jl:33 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/hssJ1/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [12] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [13] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/example_scripts/TM_Subduction_example.jl:249 [14] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [15] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/test_examples.jl:6 [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [17] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/test_examples.jl:34 [inlined] [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/test_examples.jl:35 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:6 [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [23] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:14 [inlined] [24] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [25] top-level scope @ none:6 [26] eval(m::Module, e::Any) @ Core ./boot.jl:489 [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [28] _start() @ Base ./client.jl:585 in expression starting at none:1 in expression starting at /home/pkgeval/.julia/packages/LaMEM/hssJ1/example_scripts/TM_Subduction_example.jl:241 caused by: LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/hssJ1/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem(model::Model, cores::Int64, args::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [12] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/example_scripts/TM_Subduction_example.jl:244 [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [14] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/test_examples.jl:6 [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [16] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/test_examples.jl:34 [inlined] [17] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [18] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/test_examples.jl:35 [inlined] [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [20] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:6 [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [22] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:14 [inlined] [23] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [24] top-level scope @ none:6 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [27] _start() @ Base ./client.jl:585 in expression starting at none:1 ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/0e25413977e1aa52abfecdd2bee850e964b8d477/lib/libproj.so" libsqlite3.so.0: cannot open shared object file: No such file or directory Stacktrace:  [1] #dlopen#3  @ ./libdl.jl:120 [inlined]  [2] dlopen(s::String, flags::UInt32)  @ Base.Libc.Libdl ./libdl.jl:119  [3] top-level scope  @ ~/.julia/packages/PROJ_jll/lq5nt/src/wrappers/x86_64-linux-gnu-cxx11.jl:50  [4] macro expansion  @ ~/.julia/packages/JLLWrappers/m2Pjh/src/products/library_generators.jl:63 [inlined]  [5] run_module_init(mod::Module, i::Int64)  @ Base ./loading.jl:1607  [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)  @ Base ./loading.jl:1595  [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)  @ Base ./loading.jl:1483  [8] _include_from_serialized  @ ./loading.jl:1440 [inlined]  [9] _require_search_from_serialized(pkg::Base.PkgId, sourcespec::Base.PkgLoadSpec, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2315  [10] _require_search_from_serialized  @ ./loading.jl:2209 [inlined]  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2866  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2725  [13] macro expansion  @ ./loading.jl:2653 [inlined]  [14] macro expansion  @ ./lock.jl:376 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2617  [16] require  @ ./loading.jl:2593 [inlined]  [17] eval_import_path  @ ./module.jl:36 [inlined]  [18] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [19] _eval_using  @ ./module.jl:137 [inlined]  [20] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [21] top-level scope  @ ~/.julia/packages/libgeotiff_jll/yV3Si/src/wrappers/x86_64-linux-gnu.jl:7  [22] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [23] top-level scope  @ ~/.julia/packages/JLLWrappers/m2Pjh/src/toplevel_generators.jl:199  [24] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [25] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3308  [26] top-level scope  @ stdin:5  [27] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [28] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3150  [29] include_string  @ ./loading.jl:3160 [inlined]  [30] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [31] _start()  @ Base ./client.jl:585 during initialization of module PROJ_jll in expression starting at /home/pkgeval/.julia/packages/libgeotiff_jll/yV3Si/src/wrappers/x86_64-linux-gnu.jl:7 in expression starting at /home/pkgeval/.julia/packages/libgeotiff_jll/yV3Si/src/libgeotiff_jll.jl:2 in expression starting at stdin:5 ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/0e25413977e1aa52abfecdd2bee850e964b8d477/lib/libproj.so" libsqlite3.so.0: cannot open shared object file: No such file or directory Stacktrace:  [1] #dlopen#3  @ ./libdl.jl:120 [inlined]  [2] dlopen(s::String, flags::UInt32)  @ Base.Libc.Libdl ./libdl.jl:119  [3] top-level scope  @ ~/.julia/packages/PROJ_jll/lq5nt/src/wrappers/x86_64-linux-gnu-cxx11.jl:50  [4] macro expansion  @ ~/.julia/packages/JLLWrappers/m2Pjh/src/products/library_generators.jl:63 [inlined]  [5] run_module_init(mod::Module, i::Int64)  @ Base ./loading.jl:1607  [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)  @ Base ./loading.jl:1595  [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)  @ Base ./loading.jl:1483  [8] _include_from_serialized  @ ./loading.jl:1440 [inlined]  [9] _require_search_from_serialized(pkg::Base.PkgId, sourcespec::Base.PkgLoadSpec, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2315  [10] _require_search_from_serialized  @ ./loading.jl:2209 [inlined]  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2866  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2725  [13] macro expansion  @ ./loading.jl:2653 [inlined]  [14] macro expansion  @ ./lock.jl:376 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2617  [16] require  @ ./loading.jl:2593 [inlined]  [17] eval_import_path  @ ./module.jl:36 [inlined]  [18] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [19] _eval_using  @ ./module.jl:137 [inlined]  [20] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [21] top-level scope  @ ~/.julia/packages/GDAL_jll/fyGA8/src/wrappers/x86_64-linux-gnu-cxx11.jl:17  [22] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [23] top-level scope  @ ~/.julia/packages/JLLWrappers/m2Pjh/src/toplevel_generators.jl:199  [24] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [25] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3308  [26] top-level scope  @ stdin:5  [27] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [28] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3150  [29] include_string  @ ./loading.jl:3160 [inlined]  [30] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [31] _start()  @ Base ./client.jl:585 during initialization of module PROJ_jll in expression starting at /home/pkgeval/.julia/packages/GDAL_jll/fyGA8/src/wrappers/x86_64-linux-gnu-cxx11.jl:17 in expression starting at /home/pkgeval/.julia/packages/GDAL_jll/fyGA8/src/GDAL_jll.jl:2 in expression starting at stdin:5 WARNING: Method definition piece(ReadVTK.VTKFile) in module ReadVTK at /home/pkgeval/.julia/packages/ReadVTK/cMvIT/src/ReadVTK.jl:186 overwritten in module IO_functions at /home/pkgeval/.julia/packages/LaMEM/hssJ1/src/read_timestep.jl:279. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("2e889f3d-35ce-4a77-8ea2-858aecb630f7"), "LaMEM") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2873  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2725  [4] macro expansion  @ ./loading.jl:2653 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2617  [7] require  @ ./loading.jl:2593 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base ./module.jl:101  [11] top-level scope  @ ~/.julia/packages/LaMEM/hssJ1/ext/PlotsExt.jl:5  [12] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3308  [14] top-level scope  @ stdin:5  [15] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3150  [17] include_string  @ ./loading.jl:3160 [inlined]  [18] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [19] _start()  @ Base ./client.jl:585 in expression starting at /home/pkgeval/.julia/packages/LaMEM/hssJ1/ext/PlotsExt.jl:1 in expression starting at stdin:5 4 dependencies had output during precompilation: ┌ GDAL_jll │ ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/0e25413977e1aa52abfecdd2bee850e964b8d477/lib/libproj.so" │ libsqlite3.so.0: cannot open shared object file: No such file or directory │ Stacktrace: │ [1] #dlopen#3 │ @ ./libdl.jl:120 [inlined] │ [2] dlopen(s::String, flags::UInt32) │ @ Base.Libc.Libdl ./libdl.jl:119 │ [3] top-level scope │ @ ~/.julia/packages/PROJ_jll/lq5nt/src/wrappers/x86_64-linux-gnu-cxx11.jl:50 │ [4] macro expansion │ @ ~/.julia/packages/JLLWrappers/m2Pjh/src/products/library_generators.jl:63 [inlined] │ [5] run_module_init(mod::Module, i::Int64) │ @ Base ./loading.jl:1607 │ [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) │ @ Base ./loading.jl:1595 │ [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) │ @ Base ./loading.jl:1483 │ [8] _include_from_serialized │ @ ./loading.jl:1440 [inlined] │ [9] _require_search_from_serialized(pkg::Base.PkgId, sourcespec::Base.PkgLoadSpec, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) │ @ Base ./loading.jl:2315 │ [10] _require_search_from_serialized │ @ ./loading.jl:2209 [inlined] │ [11] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2866 │ [12] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2725 │ [13] macro expansion │ @ ./loading.jl:2653 [inlined] │ [14] macro expansion │ @ ./lock.jl:376 [inlined] │ [15] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2617 │ [16] require │ @ ./loading.jl:2593 [inlined] │ [17] eval_import_path │ @ ./module.jl:36 [inlined] │ [18] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base ./module.jl:60 │ [19] _eval_using │ @ ./module.jl:137 [inlined] │ [20] _eval_using(to::Module, path::Expr) │ @ Base ./module.jl:137 │ [21] top-level scope │ @ ~/.julia/packages/GDAL_jll/fyGA8/src/wrappers/x86_64-linux-gnu-cxx11.jl:17 │ [22] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [23] top-level scope │ @ ~/.julia/packages/JLLWrappers/m2Pjh/src/toplevel_generators.jl:199 │ [24] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [25] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3308 │ [26] top-level scope │ @ stdin:5 │ [27] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [28] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:3150 │ [29] include_string │ @ ./loading.jl:3160 [inlined] │ [30] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:342 │ [31] _start() │ @ Base ./client.jl:585 │ during initialization of module PROJ_jll │ in expression starting at /home/pkgeval/.julia/packages/GDAL_jll/fyGA8/src/wrappers/x86_64-linux-gnu-cxx11.jl:17 │ in expression starting at /home/pkgeval/.julia/packages/GDAL_jll/fyGA8/src/GDAL_jll.jl:2 │ in expression starting at stdin:5 └ ┌ libgeotiff_jll │ ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/0e25413977e1aa52abfecdd2bee850e964b8d477/lib/libproj.so" │ libsqlite3.so.0: cannot open shared object file: No such file or directory │ Stacktrace: │ [1] #dlopen#3 │ @ ./libdl.jl:120 [inlined] │ [2] dlopen(s::String, flags::UInt32) │ @ Base.Libc.Libdl ./libdl.jl:119 │ [3] top-level scope │ @ ~/.julia/packages/PROJ_jll/lq5nt/src/wrappers/x86_64-linux-gnu-cxx11.jl:50 │ [4] macro expansion │ @ ~/.julia/packages/JLLWrappers/m2Pjh/src/products/library_generators.jl:63 [inlined] │ [5] run_module_init(mod::Module, i::Int64) │ @ Base ./loading.jl:1607 │ [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) │ @ Base ./loading.jl:1595 │ [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) │ @ Base ./loading.jl:1483 │ [8] _include_from_serialized │ @ ./loading.jl:1440 [inlined] │ [9] _require_search_from_serialized(pkg::Base.PkgId, sourcespec::Base.PkgLoadSpec, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) │ @ Base ./loading.jl:2315 │ [10] _require_search_from_serialized │ @ ./loading.jl:2209 [inlined] │ [11] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2866 │ [12] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2725 │ [13] macro expansion │ @ ./loading.jl:2653 [inlined] │ [14] macro expansion │ @ ./lock.jl:376 [inlined] │ [15] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2617 │ [16] require │ @ ./loading.jl:2593 [inlined] │ [17] eval_import_path │ @ ./module.jl:36 [inlined] │ [18] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base ./module.jl:60 │ [19] _eval_using │ @ ./module.jl:137 [inlined] │ [20] _eval_using(to::Module, path::Expr) │ @ Base ./module.jl:137 │ [21] top-level scope │ @ ~/.julia/packages/libgeotiff_jll/yV3Si/src/wrappers/x86_64-linux-gnu.jl:7 │ [22] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [23] top-level scope │ @ ~/.julia/packages/JLLWrappers/m2Pjh/src/toplevel_generators.jl:199 │ [24] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [25] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3308 │ [26] top-level scope │ @ stdin:5 │ [27] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [28] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:3150 │ [29] include_string │ @ ./loading.jl:3160 [inlined] │ [30] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:342 │ [31] _start() │ @ Base ./client.jl:585 │ during initialization of module PROJ_jll │ in expression starting at /home/pkgeval/.julia/packages/libgeotiff_jll/yV3Si/src/wrappers/x86_64-linux-gnu.jl:7 │ in expression starting at /home/pkgeval/.julia/packages/libgeotiff_jll/yV3Si/src/libgeotiff_jll.jl:2 │ in expression starting at stdin:5 └ ┌ LaMEM → PlotsExt │ [Output was shown above] └ ┌ LaMEM │ WARNING: Method definition piece(ReadVTK.VTKFile) in module ReadVTK at /home/pkgeval/.julia/packages/ReadVTK/cMvIT/src/ReadVTK.jl:186 overwritten in module IO_functions at /home/pkgeval/.julia/packages/LaMEM/hssJ1/src/read_timestep.jl:279. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ Error: Error during loading of extension PlotsExt of LaMEM, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 3 packages failed to precompile: │ │ GDAL_jll │ Failed to precompile GDAL_jll [a7073274-a066-55f0-b90d-d619367d196c] to "/home/pkgeval/.julia/compiled/v1.14/GDAL_jll/jl_KdwS6p" (ProcessExited(1)). │ │ libgeotiff_jll │ Failed to precompile libgeotiff_jll [06c338fa-64ff-565b-ac2f-249532af990e] to "/home/pkgeval/.julia/compiled/v1.14/libgeotiff_jll/jl_ZtJbjQ" (ProcessExited(1)). │ │ LaMEM → PlotsExt │ Failed to precompile PlotsExt [f070d93b-cf11-56bb-854c-99e35c9a15ac] to "/home/pkgeval/.julia/compiled/v1.14/PlotsExt/jl_BuCAI6" (ProcessExited(1)). │ └ @ Base loading.jl:1781 Saved file: Model3D.vts PassiveTracers: Error During Test at /home/pkgeval/.julia/packages/LaMEM/hssJ1/test/test_examples.jl:45 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/hssJ1/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [12] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [13] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/example_scripts/PassiveTracers.jl:13 [14] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [15] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/test_examples.jl:6 [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [17] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/test_examples.jl:46 [inlined] [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/test_examples.jl:47 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:6 [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [23] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:14 [inlined] [24] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [25] top-level scope @ none:6 [26] eval(m::Module, e::Any) @ Core ./boot.jl:489 [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [28] _start() @ Base ./client.jl:585 in expression starting at none:1 in expression starting at /home/pkgeval/.julia/packages/LaMEM/hssJ1/example_scripts/PassiveTracers.jl:13 Saved file: Model3D.vts surface erosion: Error During Test at /home/pkgeval/.julia/packages/LaMEM/hssJ1/test/test_erosion.jl:7 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/hssJ1/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [12] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [13] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/test_erosion.jl:8 [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [15] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/test_erosion.jl:46 [inlined] [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:6 [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:15 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ none:6 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [24] _start() @ Base ./client.jl:585 in expression starting at none:1 Saved file: Model3D.vts sedimentation test: Error During Test at /home/pkgeval/.julia/packages/LaMEM/hssJ1/test/test_sedimentation.jl:7 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/hssJ1/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem @ ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [12] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/hssJ1/src/LaMEM_ModelGeneration/Model.jl:195 [13] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/test_sedimentation.jl:8 [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [15] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/test_sedimentation.jl:43 [inlined] [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] top-level scope @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:6 [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/hssJ1/test/runtests.jl:16 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ none:6 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [24] _start() @ Base ./client.jl:585 in expression starting at none:1 Test Summary: | Pass Error Total Time LaMEM.jl | 8 18 26 7m22.9s Julia setup | 1 1 52.0s velocity box | 1 1 0.8s phase transitions | 1 1 8.8s phase diagrams | 1 1 2.8s build-in geometries | 1 1 0.9s run LaMEM | 2 1 3 18.2s read LaMEM output | 5 1 6 46.3s run lamem mode save grid test | 1 1 2 1.9s Test mesh refinement | 1 1 2.4s Read logfile | 1 1 0.9s filesize compression | 1 1 0.3s GeoParams 0D rheology | 1 1 1.2s examples in /scripts | 4 4 4m58.5s Subduction3D | 1 1 9.6s StrengthEnvelop | 1 1 1m36.7s TM_Subduction_example | 1 1 18.6s PassiveTracers | 1 1 2m53.7s surface erosion | 1 1 5.3s sedimentation test | 1 1 0.2s RNG of the outermost testset: Random.Xoshiro(0xff44bccd3a537176, 0xec285d3d37be017a, 0xefbcd25854860161, 0x4550e8922b4c8c65, 0x57a44c3db743538c) ERROR: LoadError: Some tests did not pass: 8 passed, 0 failed, 18 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/LaMEM/hssJ1/test/runtests.jl:4 Testing failed after 531.59s ERROR: LoadError: Package LaMEM errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3122 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2987 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 883.25s: package requires a missing binary dependency