Package evaluation to test GeneFinder on Julia 1.14.0-DEV.1589 (2d9a3f8a61*) started at 2026-01-21T05:34:49.648


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 9.85s


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# Installation
#

Installing GeneFinder...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [2bc6ee46] + GeneFinder v0.8.0
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [f861b655] + BioMarkovChains v1.0.0
⌅ [7e6ae17a] + BioSequences v3.4.2
  [3c28c6f8] + BioSymbols v5.2.0
  [2bc6ee46] + GeneFinder v0.8.0
  [c8e1da08] + IterTools v1.10.0
  [445028e4] + Kmers v1.2.0
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.1
  [1e83bf80] + StaticArraysCore v1.4.4
  [7200193e] + Twiddle v1.1.2
  [2ef45bd6] + VectorizedKmers v0.9.2
  [ade2ca70] + Dates v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [fa267f1f] + TOML v1.0.3
  [4ec0a83e] + Unicode v1.11.0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 3.9s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...
Precompiling packages...
   9062.4 ms  ✓ BioSequences
   2229.1 ms  ✓ Kmers
   1271.3 ms  ✓ VectorizedKmers → BioSequencesExt
   2156.7 ms  ✓ FASTX → BioSequencesExt
   1306.5 ms  ✓ Kmers → RandomExt
   1176.5 ms  ✓ Kmers → StringViewsExt
   3790.1 ms  ✓ BioMarkovChains
   5366.2 ms  ✓ GeneFinder
  8 dependencies successfully precompiled in 27 seconds. 46 already precompiled.

Precompilation completed after 44.4s


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# Testing
#

     Testing GeneFinder
      Status `/tmp/jl_KhodCk/Project.toml`
  [4c88cf16] Aqua v0.8.14
  [f861b655] BioMarkovChains v1.0.0
⌅ [7e6ae17a] BioSequences v3.4.2
  [c2308a5c] FASTX v2.1.7
  [2bc6ee46] GeneFinder v0.8.0
  [445028e4] Kmers v1.2.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_KhodCk/Manifest.toml`
  [4c88cf16] Aqua v0.8.14
  [67c07d97] Automa v1.1.0
  [47718e42] BioGenerics v0.1.5
  [f861b655] BioMarkovChains v1.0.0
⌅ [7e6ae17a] BioSequences v3.4.2
  [3c28c6f8] BioSymbols v5.2.0
  [34da2185] Compat v4.18.1
  [c2308a5c] FASTX v2.1.7
  [2bc6ee46] GeneFinder v0.8.0
  [c8e1da08] IterTools v1.10.0
  [445028e4] Kmers v1.2.0
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.1
  [fdea26ae] SIMD v3.7.2
  [1e83bf80] StaticArraysCore v1.4.4
  [354b36f9] StringViews v1.3.7
  [3bb67fe8] TranscodingStreams v0.11.3
  [7200193e] Twiddle v1.1.2
  [2ef45bd6] VectorizedKmers v0.9.2
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [b27032c2] LibCURL v1.0.0
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.14.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [f489334b] StyledStrings v1.13.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.18.0+0
  [e37daf67] LibGit2_jll v1.9.2+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.12.2
  [458c3c95] OpenSSL_jll v3.5.4+0
  [efcefdf7] PCRE2_jll v10.47.0+0
  [83775a58] Zlib_jll v1.3.1+2
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850ede] nghttp2_jll v1.68.0+1
  [3f19e933] p7zip_jll v17.7.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
Test Summary:    | Pass  Total  Time
ORF Construction |   19     19  2.5s
Test Summary:   | Pass  Total  Time
ORF Comparisons |   12     12  1.8s
Test Summary: | Pass  Total  Time
ORFCollection |   18     18  0.6s
Test Summary:       | Pass  Total  Time
Sequence Extraction |   15     15  1.9s
Test Summary: | Pass  Total  Time
Translation   |   13     13  1.3s
Test Summary:             | Pass  Total  Time
ORFCollection Comparisons |    4      4  1.6s
Test Summary:  | Pass  Total  Time
Set Operations |    7      7  0.9s
Test Summary: | Pass  Total  Time
NaiveFinder   |   10     10  0.1s
Test Summary:   | Pass  Total  Time
NaiveFinderLazy |    4      4  0.1s
Test Summary:  | Pass  Total  Time
NaiveCollector |    4      4  1.9s
Test Summary:              | Pass  Total  Time
Lambda Phage (Integration) |  203    203  3.0s
Test Summary: | Pass  Total  Time
Edge Cases    |    7      7  0.0s
Test Summary: | Pass  Total   Time
Aqua tests    |    5      5  57.9s
Test Summary:   | Pass  Total  Time
Writing methods |  105    105  1.6s
     Testing GeneFinder tests passed 

Testing completed after 98.76s

PkgEval succeeded after 167.17s