Package evaluation to test MultilayerGraphs on Julia 1.14.0-DEV.1584 (ac5fadde9b*) started at 2026-01-19T00:17:09.757 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 10.63s ################################################################################ # Installation # Installing MultilayerGraphs... Resolving package versions... Installed Rmath_jll ─────────────────── v0.5.1+0 Installed StridedViews ──────────────── v0.4.2 Installed Collects ──────────────────── v1.0.0 Installed MacroTools ────────────────── v0.5.16 Installed DataStructures ────────────── v0.18.22 Installed FillArrays ────────────────── v1.16.0 Installed JLD2 ──────────────────────── v0.4.55 Installed OMEinsum ──────────────────── v0.9.3 Installed AbstractTrees ─────────────── v0.4.5 Installed Bijections ────────────────── v0.2.2 Installed HypergeometricFunctions ───── v0.3.28 Installed ConstructionBase ──────────── v1.6.0 Installed ArnoldiMethod ─────────────── v0.4.0 Installed AliasTables ───────────────── v1.1.3 Installed BitBasis ──────────────────── v0.9.10 Installed Pipe ──────────────────────── v1.3.0 Installed Compat ────────────────────── v4.18.1 Installed OrderedCollections ────────── v1.8.1 Installed ProxyInterfaces ───────────── v1.1.1 Installed TranscodingStreams ────────── v0.11.3 Installed ExprParsers ───────────────── v1.2.3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Suppressor ────────────────── v0.2.8 Installed StatsBase ─────────────────── v0.34.10 Installed SimpleWeightedGraphs ──────── v1.5.1 Installed DataAPI ───────────────────── v1.16.0 Installed Statistics ────────────────── v1.11.1 Installed Combinatorics ─────────────── v1.1.0 Installed BatchedRoutines ───────────── v0.2.2 Installed StatsAPI ──────────────────── v1.8.0 Installed DataValueInterfaces ───────── v1.0.0 Installed StaticArraysCore ──────────── v1.4.4 Installed PrecompileTools ───────────── v1.3.3 Installed FileIO ────────────────────── v1.17.1 Installed IrrationalConstants ───────── v0.2.6 Installed TupleTools ────────────────── v1.6.0 Installed StaticArrays ──────────────── v1.9.16 Installed QuadGK ────────────────────── v2.11.2 Installed StringManipulation ────────── v0.4.2 Installed SimpleMatch ───────────────── v1.1.0 Installed ChainRulesCore ────────────── v1.26.0 Installed Requires ──────────────────── v1.3.1 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed SimpleTraits ──────────────── v0.9.5 Installed JSON ──────────────────────── v0.21.4 Installed LogExpFunctions ───────────── v0.3.29 Installed MultilayerGraphs ──────────── v1.1.5 Installed PackageExtensionCompat ────── v1.0.2 Installed CliqueTrees ───────────────── v1.12.3 Installed PrettyTables ──────────────── v3.1.2 Installed Distributions ─────────────── v0.25.123 Installed Parsers ───────────────────── v2.8.3 Installed StatsFuns ─────────────────── v1.5.2 Installed PtrArrays ─────────────────── v1.3.0 Installed Tables ────────────────────── v1.12.1 Installed Rmath ─────────────────────── v0.9.0 Installed FixedSizeArrays ───────────── v1.2.0 Installed Reexport ──────────────────── v1.2.2 Installed SpecialFunctions ──────────── v2.6.1 Installed DataTypesBasic ────────────── v2.0.3 Installed StructEquality ────────────── v2.1.0 Installed TreeWidthSolver ───────────── v0.3.5 Installed Setfield ──────────────────── v1.1.2 Installed MetaGraphs ────────────────── v0.7.2 Installed Missings ──────────────────── v1.2.0 Installed JLLWrappers ───────────────── v1.7.1 Installed Preferences ───────────────── v1.5.1 Installed VectorInterface ───────────── v0.5.0 Installed LaTeXStrings ──────────────── v1.4.0 Installed TableTraits ───────────────── v1.0.1 Installed TensorOperations ──────────── v5.4.0 Installed LRUCache ──────────────────── v1.6.2 Installed SortingAlgorithms ─────────── v1.2.2 Installed Crayons ───────────────────── v4.1.1 Installed PDMats ────────────────────── v0.11.37 Installed OMEinsumContractionOrders ─── v1.2.2 Installed IterTools ─────────────────── v1.10.0 Installed DocStringExtensions ───────── v0.9.5 Installed Inflate ───────────────────── v0.1.5 Installed WhereTraits ───────────────── v1.1.2 Installed Graphs ────────────────────── v1.13.1 Installed Strided ───────────────────── v2.3.2 Installed SimpleValueGraphs ─────────── v0.4.1 Installing 2 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.14/Project.toml` [af984530] + MultilayerGraphs v1.1.5 Updating `~/.julia/environments/v1.14/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [a9ab73d0] + BatchedRoutines v0.2.2 [e2ed5e7c] + Bijections v0.2.2 [50ba71b6] + BitBasis v0.9.10 [d360d2e6] + ChainRulesCore v1.26.0 [60701a23] + CliqueTrees v1.12.3 [08986516] + Collects v1.0.0 [861a8166] + Combinatorics v1.1.0 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [83eed652] + DataTypesBasic v2.0.3 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [c5caad1f] + ExprParsers v1.2.3 [5789e2e9] + FileIO v1.17.1 [1a297f60] + FillArrays v1.16.0 [3821ddf9] + FixedSizeArrays v1.2.0 ⌃ [86223c79] + Graphs v1.13.1 [34004b35] + HypergeometricFunctions v0.3.28 [d25df0c9] + Inflate v0.1.5 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.4.55 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [8ac3fa9e] + LRUCache v1.6.2 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 ⌅ [626554b9] + MetaGraphs v0.7.2 [e1d29d7a] + Missings v1.2.0 [af984530] + MultilayerGraphs v1.1.5 [ebe7aa44] + OMEinsum v0.9.3 ⌃ [6f22d1fd] + OMEinsumContractionOrders v1.2.2 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [65ce6f38] + PackageExtensionCompat v1.0.2 [69de0a69] + Parsers v2.8.3 [b98c9c47] + Pipe v1.3.0 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [9b3bf0c4] + ProxyInterfaces v1.1.1 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [efcf1570] + Setfield v1.1.2 [a3ae8450] + SimpleMatch v1.1.0 [699a6c99] + SimpleTraits v0.9.5 [b43c691f] + SimpleValueGraphs v0.4.1 [47aef6b3] + SimpleWeightedGraphs v1.5.1 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [5e0ebb24] + Strided v2.3.2 [4db3bf67] + StridedViews v0.4.2 [892a3eda] + StringManipulation v0.4.2 [6ec83bb0] + StructEquality v2.1.0 [fd094767] + Suppressor v0.2.8 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [6aa20fa7] + TensorOperations v5.4.0 [3bb67fe8] + TranscodingStreams v0.11.3 [7d267fc5] + TreeWidthSolver v0.3.5 [9d95972d] + TupleTools v1.6.0 [409d34a3] + VectorInterface v0.5.0 [c9d4e05b] + WhereTraits v1.1.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 11.04s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4477.6 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling packages... 4621.9 ms ✓ MacroTools 1662.5 ms ✓ InlineStrings 964.2 ms ✓ Collects 846.4 ms ✓ Reexport 1196.1 ms ✓ ConstructionBase 2188.3 ms ✓ IrrationalConstants 843.6 ms ✓ DataValueInterfaces WARNING: method definition for promote_typejoin at /home/pkgeval/.julia/packages/DataTypesBasic/1o2ng/src/promote_type.jl:214 declares type variable L but does not use it. 2316.9 ms ✓ DataTypesBasic 935.1 ms ✓ StatsAPI 1229.3 ms ✓ IterTools 2247.1 ms ✓ Combinatorics 1095.2 ms ✓ Inflate 1097.1 ms ✓ TupleTools 835.2 ms ✓ CommonSolve 1326.7 ms ✓ TranscodingStreams 890.8 ms ✓ LaTeXStrings 833.5 ms ✓ SimpleMatch 1189.7 ms ✓ Statistics 1021.2 ms ✓ StaticArraysCore 857.6 ms ✓ Suppressor 847.4 ms ✓ ProxyInterfaces 1107.1 ms ✓ LRUCache 877.0 ms ✓ PtrArrays 858.0 ms ✓ SimpleBufferStream 1263.2 ms ✓ VectorInterface 932.4 ms ✓ DataAPI 838.7 ms ✓ RealDot 1284.3 ms ✓ URIs 868.9 ms ✓ InvertedIndices 985.2 ms ✓ InverseFunctions 1333.2 ms ✓ ArrayTools 912.4 ms ✓ CompositionsBase 910.7 ms ✓ BitFlags 1165.4 ms ✓ AbstractTrees 1058.7 ms ✓ WorkerUtilities 1032.9 ms ✓ Bijections 2236.7 ms ✓ FillArrays 1245.4 ms ✓ BatchedRoutines 877.8 ms ✓ UnPack 2064.3 ms ✓ SpatialIndexing 1331.3 ms ✓ OrderedCollections 1155.5 ms ✓ DocStringExtensions 822.6 ms ✓ Pipe 821.0 ms ✓ IteratorInterfaceExtensions 872.6 ms ✓ PackageExtensionCompat 1977.1 ms ✓ Crayons 1248.3 ms ✓ Requires 1911.1 ms ✓ ConcurrentUtilities 1911.5 ms ✓ PDMats 1004.5 ms ✓ Scratch 2229.0 ms ✓ SentinelArrays 1124.5 ms ✓ LoggingExtras 1878.2 ms ✓ ProgressMeter 1213.7 ms ✓ Compat 1202.0 ms ✓ Preferences 1608.4 ms ✓ ExceptionUnwrapping 3395.3 ms ✓ SimpleTraits 1155.1 ms ✓ FixedSizeArrays 873.1 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 1036.2 ms ✓ CodecZlib 1326.1 ms ✓ Statistics → SparseArraysExt 1497.9 ms ✓ Distances 842.8 ms ✓ LRUCache → SerializationExt 1009.2 ms ✓ AliasTables 1038.1 ms ✓ Missings 1057.1 ms ✓ PooledArrays 1089.6 ms ✓ Quaternions 899.6 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1689.9 ms ✓ InverseFunctions → InverseFunctionsTestExt 856.0 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 3979.9 ms ✓ OpenSSL 1528.5 ms ✓ FillArrays → FillArraysSparseArraysExt 957.6 ms ✓ FillArrays → FillArraysStatisticsExt 982.6 ms ✓ Parameters 1384.8 ms ✓ LogExpFunctions 840.2 ms ✓ TableTraits 1051.8 ms ✓ StridedViews 9028.0 ms ✓ FileIO 1485.4 ms ✓ FillArrays → FillArraysPDMatsExt 914.0 ms ✓ Compat → CompatLinearAlgebraExt 960.4 ms ✓ PrecompileTools 1230.1 ms ✓ JLLWrappers 834.3 ms ✓ FixedSizeArrays → RandomExt 3033.8 ms ✓ Setfield 1319.2 ms ✓ Distances → DistancesSparseArraysExt 5250.9 ms ✓ Accessors 880.3 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1848.4 ms ✓ Tables 827.0 ms ✓ StridedViews → StridedViewsPtrArraysExt 1270.2 ms ✓ Strided 2806.0 ms ✓ ChainRulesCore 2270.7 ms ✓ FilePathsBase 928.4 ms ✓ StructEquality 4213.3 ms ✓ DataStructures 3328.6 ms ✓ StringManipulation 14668.8 ms ✓ StaticArrays 16594.2 ms ✓ Parsers 3385.9 ms ✓ LightSumTypes 46603.9 ms ✓ JLD2 1524.6 ms ✓ Rmath_jll 1719.2 ms ✓ OpenSpecFun_jll 1581.2 ms ✓ Libiconv_jll 1524.6 ms ✓ MbedTLS_jll 1740.0 ms ✓ Accessors → TestExt 2284.7 ms ✓ Accessors → LinearAlgebraExt ┌ Info: TensorOperations can optionally be instructed to precompile several functions, which can be used to reduce the time to first execution (TTFX). │ This is disabled by default as this can take a while on some machines, and is only relevant for contraction-heavy workloads. │ │ To enable or disable precompilation, you can use the following script: │ │ ```julia │ using TensorOperations, Preferences │ set_preferences!(TensorOperations, "precompile_workload" => true; force=true) │ ``` │ └ This will create a `LocalPreferences.toml` file next to your current `Project.toml` file to store this setting in a persistent way. 3562.8 ms ✓ TensorOperations 1446.4 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 1813.7 ms ✓ Distances → DistancesChainRulesCoreExt 3606.7 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 2812.3 ms ✓ FilePathsBase → FilePathsBaseTestExt 1008.9 ms ✓ FilePathsBase → FilePathsBaseMmapExt 5448.0 ms ✓ ExprParsers 1582.5 ms ✓ SortingAlgorithms 2866.4 ms ✓ QuadGK 1969.2 ms ✓ QuickHeaps 37816.2 ms ✓ PrettyTables 2555.9 ms ✓ BitBasis 3822.8 ms ✓ ArnoldiMethod 1428.7 ms ✓ StaticArrays → StaticArraysStatisticsExt 1554.4 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1492.2 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1672.4 ms ✓ FillArrays → FillArraysStaticArraysExt 5492.2 ms ✓ Rotations 1587.6 ms ✓ Accessors → StaticArraysExt 3904.1 ms ✓ JSON 978.7 ms ✓ InlineStrings → ParsersExt 1529.4 ms ✓ Rmath 4996.2 ms ✓ SpecialFunctions 1448.9 ms ✓ XML2_jll 2031.1 ms ✓ MbedTLS 4502.1 ms ✓ HybridStructs 1855.9 ms ✓ TensorOperations → TensorOperationsChainRulesCoreExt 5185.3 ms ✓ StatsBase 84631.8 ms ✓ DataFrames 8133.7 ms ✓ NearestNeighbors 9815.3 ms ✓ Graphs 2662.3 ms ✓ WeakRefStrings 4502.9 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2473.8 ms ✓ HypergeometricFunctions 1159.1 ms ✓ LightXML 26239.3 ms ✓ HTTP 3015.7 ms ✓ OnlineStatsBase 1974.6 ms ✓ PDMats → StatsBaseExt 9255.3 ms ✓ StaticGraphs 9762.8 ms ✓ MetaGraphs 3673.0 ms ✓ SimpleWeightedGraphs 6304.9 ms ✓ CliqueTrees 3864.2 ms ✓ TreeWidthSolver 26738.8 ms ✓ CSV 3050.3 ms ✓ StatsFuns 6810.4 ms ✓ FileIO → HTTPExt 11828.2 ms ✓ WhereTraits WARNING: Constructor for type "SimpleGraph" was extended in `SimpleValueGraphs` without explicit qualification or import.  NOTE: Assumed "SimpleGraph" refers to `SimpleGraphs.SimpleGraph`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function SimpleGraph end`.  Hint: To silence the warning, qualify `SimpleGraph` as `SimpleGraphs.SimpleGraph` in the method signature or explicitly `import SimpleGraphs: SimpleGraph`. WARNING: Constructor for type "SimpleDiGraph" was extended in `SimpleValueGraphs` without explicit qualification or import.  NOTE: Assumed "SimpleDiGraph" refers to `SimpleGraphs.SimpleDiGraph`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function SimpleDiGraph end`.  Hint: To silence the warning, qualify `SimpleDiGraph` as `SimpleGraphs.SimpleDiGraph` in the method signature or explicitly `import SimpleGraphs: SimpleDiGraph`. 4559.3 ms ✓ SimpleValueGraphs 3952.4 ms ✓ CliqueTrees → TreeWidthSolverExt 3757.7 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 1077.7 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 9587.7 ms ✓ Distributions 16060.4 ms ✓ LightOSM 5829.7 ms ✓ OMEinsumContractionOrders 3414.0 ms ✓ Distributions → DistributionsTestExt 3801.9 ms ✓ Distributions → DistributionsChainRulesCoreExt 9758.3 ms ✓ StreamSampling 7754.0 ms ✓ OMEinsum 31301.0 ms ✓ Agents WARNING: method definition for #add_layer_directedness!#394 at /home/pkgeval/.julia/packages/SimpleTraits/7VJph/src/SimpleTraits.jl:337 declares type variable H but does not use it. WARNING: Method definition degree(M, V) where {M<:(MultilayerGraphs.AbstractMultilayerGraph{T, U} where U<:Real where T<:Integer), V<:(MultilayerGraphs.MultilayerVertex{S} where S)} in module MultilayerGraphs at /home/pkgeval/.julia/packages/SimpleTraits/7VJph/src/SimpleTraits.jl:332 overwritten on the same line (check for duplicate calls to `include`). ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 17949.7 ms ? MultilayerGraphs 164 dependencies successfully precompiled in 691 seconds. 41 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 4 dependencies had output during precompilation: ┌ DataTypesBasic │ WARNING: method definition for promote_typejoin at /home/pkgeval/.julia/packages/DataTypesBasic/1o2ng/src/promote_type.jl:214 declares type variable L but does not use it. └ ┌ MultilayerGraphs │ WARNING: method definition for #add_layer_directedness!#394 at /home/pkgeval/.julia/packages/SimpleTraits/7VJph/src/SimpleTraits.jl:337 declares type variable H but does not use it. │ WARNING: Method definition degree(M, V) where {M<:(MultilayerGraphs.AbstractMultilayerGraph{T, U} where U<:Real where T<:Integer), V<:(MultilayerGraphs.MultilayerVertex{S} where S)} in module MultilayerGraphs at /home/pkgeval/.julia/packages/SimpleTraits/7VJph/src/SimpleTraits.jl:332 overwritten on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ TensorOperations │ ┌ Info: TensorOperations can optionally be instructed to precompile several functions, which can be used to reduce the time to first execution (TTFX). │ │ This is disabled by default as this can take a while on some machines, and is only relevant for contraction-heavy workloads. │ │ │ │ To enable or disable precompilation, you can use the following script: │ │ │ │ ```julia │ │ using TensorOperations, Preferences │ │ set_preferences!(TensorOperations, "precompile_workload" => true; force=true) │ │ ``` │ │ │ └ This will create a `LocalPreferences.toml` file next to your current `Project.toml` file to store this setting in a persistent way. └ ┌ SimpleValueGraphs │ WARNING: Constructor for type "SimpleGraph" was extended in `SimpleValueGraphs` without explicit qualification or import. │ NOTE: Assumed "SimpleGraph" refers to `SimpleGraphs.SimpleGraph`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function SimpleGraph end`. │ Hint: To silence the warning, qualify `SimpleGraph` as `SimpleGraphs.SimpleGraph` in the method signature or explicitly `import SimpleGraphs: SimpleGraph`. │ WARNING: Constructor for type "SimpleDiGraph" was extended in `SimpleValueGraphs` without explicit qualification or import. │ NOTE: Assumed "SimpleDiGraph" refers to `SimpleGraphs.SimpleDiGraph`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function SimpleDiGraph end`. │ Hint: To silence the warning, qualify `SimpleDiGraph` as `SimpleGraphs.SimpleDiGraph` in the method signature or explicitly `import SimpleGraphs: SimpleDiGraph`. └ Precompilation completed after 711.17s ################################################################################ # Testing # Testing MultilayerGraphs Status `/tmp/jl_yNB7UX/Project.toml` [46ada45e] Agents v6.2.10 [31c24e10] Distributions v0.25.123 ⌃ [86223c79] Graphs v1.13.1 [e6f89c97] LoggingExtras v1.2.0 ⌅ [626554b9] MetaGraphs v0.7.2 [af984530] MultilayerGraphs v1.1.5 [b43c691f] SimpleValueGraphs v0.4.1 [47aef6b3] SimpleWeightedGraphs v1.5.1 [2913bbd2] StatsBase v0.34.10 [56ddb016] Logging v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_yNB7UX/Manifest.toml` [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [46ada45e] Agents v6.2.10 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 ⌅ [1dc0ca97] ArrayTools v0.2.7 [a9ab73d0] BatchedRoutines v0.2.2 [e2ed5e7c] Bijections v0.2.2 [50ba71b6] BitBasis v0.9.10 [d1d4a3ce] BitFlags v0.1.9 [336ed68f] CSV v0.10.15 [d360d2e6] ChainRulesCore v1.26.0 [60701a23] CliqueTrees v1.12.3 [944b1d66] CodecZlib v0.7.8 [08986516] Collects v1.0.0 [861a8166] Combinatorics v1.1.0 [38540f10] CommonSolve v0.2.6 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [83eed652] DataTypesBasic v2.0.3 [e2d170a0] DataValueInterfaces v1.0.0 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [460bff9d] ExceptionUnwrapping v0.1.11 [c5caad1f] ExprParsers v1.2.3 [5789e2e9] 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[4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... WARNING: Constructor for type "SimpleGraph" was extended in `SimpleValueGraphs` without explicit qualification or import.  NOTE: Assumed "SimpleGraph" refers to `SimpleGraphs.SimpleGraph`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function SimpleGraph end`.  Hint: To silence the warning, qualify `SimpleGraph` as `SimpleGraphs.SimpleGraph` in the method signature or explicitly `import SimpleGraphs: SimpleGraph`. WARNING: Constructor for type "SimpleDiGraph" was extended in `SimpleValueGraphs` without explicit qualification or import.  NOTE: Assumed "SimpleDiGraph" refers to `SimpleGraphs.SimpleDiGraph`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function SimpleDiGraph end`.  Hint: To silence the warning, qualify `SimpleDiGraph` as `SimpleGraphs.SimpleDiGraph` in the method signature or explicitly `import SimpleGraphs: SimpleDiGraph`. 1 dependency had output during precompilation: ┌ SimpleValueGraphs │ [Output was shown above] └ Update message: Agents v6 This is a new major version of Agents.jl with lots of cool stuff! However, from this version onwards, we will stop posting update messages to the REPL console! If you want to be updated, follow this discourse post: https://discourse.julialang.org/t/agents-jl-v6-releases-announcement-post/111678 (and see the CHANGELOG.md file online for a list of changes!) ┌ Info: TensorOperations can optionally be instructed to precompile several functions, which can be used to reduce the time to first execution (TTFX). │ This is disabled by default as this can take a while on some machines, and is only relevant for contraction-heavy workloads. │ │ To enable or disable precompilation, you can use the following script: │ │ ```julia │ using TensorOperations, Preferences │ set_preferences!(TensorOperations, "precompile_workload" => true; force=true) │ ``` │ └ This will create a `LocalPreferences.toml` file next to your current `Project.toml` file to store this setting in a persistent way. WARNING: method definition for #add_layer_directedness!#394 at /home/pkgeval/.julia/packages/SimpleTraits/7VJph/src/SimpleTraits.jl:337 declares type variable H but does not use it. WARNING: Method definition degree(M, V) where {M<:(MultilayerGraphs.AbstractMultilayerGraph{T, U} where U<:Real where T<:Integer), V<:(MultilayerGraphs.MultilayerVertex{S} where S)} in module MultilayerGraphs at /home/pkgeval/.julia/packages/SimpleTraits/7VJph/src/SimpleTraits.jl:332 overwritten on the same line (check for duplicate calls to `include`). ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 2 dependencies had output during precompilation: ┌ TensorOperations │ ┌ Info: TensorOperations can optionally be instructed to precompile several functions, which can be used to reduce the time to first execution (TTFX). │ │ This is disabled by default as this can take a while on some machines, and is only relevant for contraction-heavy workloads. │ │ │ │ To enable or disable precompilation, you can use the following script: │ │ │ │ ```julia │ │ using TensorOperations, Preferences │ │ set_preferences!(TensorOperations, "precompile_workload" => true; force=true) │ │ ``` │ │ │ └ This will create a `LocalPreferences.toml` file next to your current `Project.toml` file to store this setting in a persistent way. └ ┌ MultilayerGraphs │ [Output was shown above] └ WARNING: method definition for #add_layer_directedness!#394 at /home/pkgeval/.julia/packages/SimpleTraits/7VJph/src/SimpleTraits.jl:337 declares type variable H but does not use it. WARNING: Method definition degree(M, V) where {M<:(MultilayerGraphs.AbstractMultilayerGraph{T, U} where U<:Real where T<:Integer), V<:(MultilayerGraphs.MultilayerVertex{S} where S)} in module MultilayerGraphs at /home/pkgeval/.julia/packages/SimpleTraits/7VJph/src/SimpleTraits.jl:332 overwritten on the same line (check for duplicate calls to `include`). [ Info: Trying to sample a graphical sequence from the provided distribution Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0)... [ Info: Trying to sample a digraphical sequence from the two provided distributions Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0) and Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0)... [ Info: Trying to sample a graphical sequence from the provided distribution Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0)... [ Info: Trying to sample a digraphical sequence from the two provided distributions Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0) and Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0)... [ Info: Trying to sample a graphical sequence from the provided distribution Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0)... [ Info: Trying to sample a digraphical sequence from the two provided distributions Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0) and Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0)... [ Info: Trying to sample a graphical sequence from the provided distribution Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0)... [ Info: Trying to sample a digraphical sequence from the two provided distributions Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0) and Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0)... ┌ Debug: └ @ Main ~/.julia/packages/MultilayerGraphs/36zoT/test/layer.jl:47 ┌ Warning: Edge from vertex MV(Node("node_3"), :layer_sg, NamedTuple()) to vertex MV(Node("node_6"), :layer_sg, NamedTuple()) already doesn't exists in subgraph layer_sg. └ @ MultilayerGraphs ~/.julia/packages/MultilayerGraphs/36zoT/src/subgraphs/abstractsubgraph.jl:345 ┌ Warning: Edge from vertex MV(Node("node_3"), :layer_sg, NamedTuple()) to vertex MV(Node("node_6"), :layer_sg, NamedTuple()) already doesn't exists in subgraph layer_sg. └ @ MultilayerGraphs ~/.julia/packages/MultilayerGraphs/36zoT/src/subgraphs/abstractsubgraph.jl:345 ┌ Warning: Edge from vertex MV(Node("node_1"), :layer_sdg, NamedTuple()) to vertex MV(Node("node_4"), :layer_sdg, NamedTuple()) already doesn't exists in subgraph layer_sdg. └ @ MultilayerGraphs ~/.julia/packages/MultilayerGraphs/36zoT/src/subgraphs/abstractsubgraph.jl:345 ┌ Debug: └ @ Main ~/.julia/packages/MultilayerGraphs/36zoT/test/layer.jl:94 ┌ Warning: Edge from vertex MV(Node("node_1"), :layer_swg, NamedTuple()) to vertex MV(Node("node_7"), :layer_swg, NamedTuple()) already doesn't exists in subgraph layer_swg. └ @ MultilayerGraphs ~/.julia/packages/MultilayerGraphs/36zoT/src/subgraphs/abstractsubgraph.jl:345 ┌ Debug: └ @ Main ~/.julia/packages/MultilayerGraphs/36zoT/test/layer.jl:124 ┌ Warning: Edge from vertex MV(Node("node_4"), :layer_swdg, NamedTuple()) to vertex MV(Node("node_3"), :layer_swdg, NamedTuple()) already doesn't exists in subgraph layer_swdg. └ @ MultilayerGraphs ~/.julia/packages/MultilayerGraphs/36zoT/src/subgraphs/abstractsubgraph.jl:345 ┌ Warning: Edge from vertex MV(Node("node_3"), :layer_mg, NamedTuple()) to vertex MV(Node("node_4"), :layer_mg, NamedTuple()) already doesn't exists in subgraph layer_mg. └ @ MultilayerGraphs ~/.julia/packages/MultilayerGraphs/36zoT/src/subgraphs/abstractsubgraph.jl:345 ┌ Warning: Edge from vertex MV(Node("node_4"), :layer_vg, NamedTuple()) to vertex MV(Node("node_6"), :layer_vg, NamedTuple()) already doesn't exists in subgraph layer_vg. └ @ MultilayerGraphs ~/.julia/packages/MultilayerGraphs/36zoT/src/subgraphs/abstractsubgraph.jl:345 ┌ Warning: Edge from vertex MV(Node("node_1"), :layer_vodg, NamedTuple()) to vertex MV(Node("node_3"), :layer_vodg, NamedTuple()) already doesn't exists in subgraph layer_vodg. └ @ MultilayerGraphs ~/.julia/packages/MultilayerGraphs/36zoT/src/subgraphs/abstractsubgraph.jl:345 ┌ Debug: └ @ Main ~/.julia/packages/MultilayerGraphs/36zoT/test/interlayer.jl:18 [ Info: Trying to sample a graphical sequence from the provided distribution Truncated(Normal{Float64}(μ=10.0, σ=1.0); lower=0.0, upper=20.0)... ### LAYERS ┌───────────┬─────────────────────────────────────────────────────────────────── │ NAME │ U ⋯ ├───────────┼─────────────────────────────────────────────────────────────────── │ layer_sg │ Si ⋯ ├───────────┼─────────────────────────────────────────────────────────────────── │ layer_swg │ SimpleWeigh ⋯ ├───────────┼─────────────────────────────────────────────────────────────────── │ layer_mg │ MetaGr ⋯ ├───────────┼─────────────────────────────────────────────────────────────────── │ layer_vg │ ValGraph{Int64, Tuple{String}, Tuple{Float64, String}, Tuple{}, ⋯ └───────────┴─────────────────────────────────────────────────────────────────── 1 column omitted ### INTERLAYERS ┌───────────────────────────────┬───────────┬───────────┬─────────────────────── │ NAME │ LAYER 1 │ LAYER 2 │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_sg_layer_swg │ layer_sg │ layer_swg │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_sg_layer_mg │ layer_sg │ layer_mg │ ValGraph{Int64, Tupl ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_swg_layer_mg │ layer_swg │ layer_mg │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_sg_layer_vg │ layer_sg │ layer_vg │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_vg_layer_swg │ layer_vg │ layer_swg │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_mg_layer_vg │ layer_mg │ layer_vg │ ⋯ └───────────────────────────────┴───────────┴───────────┴─────────────────────── 2 columns omitted multilayergraph = `MultilayerGraph` with vertex type `Int64` and weight type `Float64`. nothing nothing [ Info: Trying to sample a digraphical sequence from the two provided distributions Truncated(Normal{Float64}(μ=10.0, σ=1.0); lower=0.0, upper=20.0) and Truncated(Normal{Float64}(μ=11.0, σ=1.0); lower=0.0, upper=22.0)... ### LAYERS ┌───────────┬─────────────────────────────────────────────────────────────────── │ NAME │ U ⋯ ├───────────┼─────────────────────────────────────────────────────────────────── │ layer_sg │ Si ⋯ ├───────────┼─────────────────────────────────────────────────────────────────── │ layer_swg │ SimpleWeigh ⋯ ├───────────┼─────────────────────────────────────────────────────────────────── │ layer_mg │ MetaGr ⋯ ├───────────┼─────────────────────────────────────────────────────────────────── │ layer_vg │ ValGraph{Int64, Tuple{String}, Tuple{Float64, String}, Tuple{}, ⋯ └───────────┴─────────────────────────────────────────────────────────────────── 1 column omitted ### INTERLAYERS ┌───────────────────────────────┬───────────┬───────────┬─────────────────────── │ NAME │ LAYER 1 │ LAYER 2 │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_sg_layer_swg │ layer_sg │ layer_swg │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_sg_layer_mg │ layer_sg │ layer_mg │ ValGraph{Int64, Tupl ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_swg_layer_mg │ layer_swg │ layer_mg │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_sg_layer_vg │ layer_sg │ layer_vg │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_vg_layer_swg │ layer_vg │ layer_swg │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_mg_layer_vg │ layer_mg │ layer_vg │ ⋯ └───────────────────────────────┴───────────┴───────────┴─────────────────────── 2 columns omitted multilayergraph = `MultilayerGraph` with vertex type `Int64` and weight type `Float64`. nothing nothing WARNING: Detected access to binding `Main.EigenAgent` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. Test Summary: | Pass Broken Total Time MultilayerGraphs | 676 23 699 5m01.7s layer | 110 7 117 22.3s interlayer | 85 85 33.4s undirected | 178 8 186 2m38.8s directed | 275 8 283 56.9s node_aligned_edge_colored_graphs | 6 6 10.0s agents_jl_integration | 20 20 17.6s utilities | 2 2 2.6s Testing MultilayerGraphs tests passed Testing completed after 1058.87s PkgEval succeeded after 1840.79s