Package evaluation to test GenomicFeatures on Julia 1.14.0-DEV.1584 (ac5fadde9b*) started at 2026-01-18T13:02:46.551 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 10.08s ################################################################################ # Installation # Installing GenomicFeatures... Resolving package versions... Installed Compat ───────────── v4.18.1 Installed OrderedCollections ─ v1.8.1 Installed TranscodingStreams ─ v0.11.3 Installed BioGenerics ──────── v0.1.5 Installed IntervalTrees ────── v1.1.0 Installed DataStructures ───── v0.18.22 Installed GenomicFeatures ──── v3.0.0 Updating `~/.julia/environments/v1.14/Project.toml` [899a7d2d] + GenomicFeatures v3.0.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [47718e42] + BioGenerics v0.1.5 [34da2185] + Compat v4.18.1 ⌅ [864edb3b] + DataStructures v0.18.22 [899a7d2d] + GenomicFeatures v3.0.0 [524e6230] + IntervalTrees v1.1.0 [bac558e1] + OrderedCollections v1.8.1 [3bb67fe8] + TranscodingStreams v0.11.3 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.18s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4662.3 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling packages... 860.3 ms ✓ Reexport 1169.6 ms ✓ Statistics 910.0 ms ✓ DataAPI 2090.6 ms ✓ IrrationalConstants 888.4 ms ✓ StatsAPI 1284.8 ms ✓ OrderedCollections 1187.0 ms ✓ DocStringExtensions 1230.6 ms ✓ IntervalTrees 2111.5 ms ✓ FillArrays 890.1 ms ✓ PtrArrays 1303.9 ms ✓ TranscodingStreams 1833.2 ms ✓ PDMats 1212.2 ms ✓ Compat 1190.9 ms ✓ Preferences 1387.0 ms ✓ Statistics → SparseArraysExt 1057.7 ms ✓ Missings 1397.8 ms ✓ LogExpFunctions 1592.1 ms ✓ FillArrays → FillArraysSparseArraysExt 1037.2 ms ✓ FillArrays → FillArraysStatisticsExt 1048.9 ms ✓ AliasTables 1002.0 ms ✓ BioGenerics 1522.9 ms ✓ FillArrays → FillArraysPDMatsExt 903.2 ms ✓ Compat → CompatLinearAlgebraExt 1273.0 ms ✓ JLLWrappers 3850.5 ms ✓ DataStructures 1432.7 ms ✓ Rmath_jll 1408.2 ms ✓ OpenSpecFun_jll 1607.0 ms ✓ SortingAlgorithms 2880.2 ms ✓ QuadGK WARNING: method definition for == at /home/pkgeval/.julia/packages/GenomicFeatures/tOEn1/src/position.jl:57 declares type variable T but does not use it. 1676.6 ms ✓ GenomicFeatures 1540.2 ms ✓ Rmath 5059.2 ms ✓ SpecialFunctions 5219.3 ms ✓ StatsBase 2382.0 ms ✓ HypergeometricFunctions 1983.9 ms ✓ PDMats → StatsBaseExt 2982.4 ms ✓ StatsFuns 10329.0 ms ✓ Distributions 4458.9 ms ✓ Distributions → DistributionsTestExt 38 dependencies successfully precompiled in 77 seconds. 17 already precompiled. 1 dependency had output during precompilation: ┌ GenomicFeatures │ WARNING: method definition for == at /home/pkgeval/.julia/packages/GenomicFeatures/tOEn1/src/position.jl:57 declares type variable T but does not use it. └ Precompilation completed after 102.16s ################################################################################ # Testing # Testing GenomicFeatures Status `/tmp/jl_zEBTbU/Project.toml` [47718e42] BioGenerics v0.1.5 ⌅ [864edb3b] DataStructures v0.18.22 [31c24e10] Distributions v0.25.123 [899a7d2d] GenomicFeatures v3.0.0 [524e6230] IntervalTrees v1.1.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_zEBTbU/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [47718e42] BioGenerics v0.1.5 [34da2185] Compat v4.18.1 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [1a297f60] FillArrays v1.16.0 [899a7d2d] GenomicFeatures v3.0.0 [34004b35] HypergeometricFunctions v0.3.28 [524e6230] IntervalTrees v1.1.0 [92d709cd] IrrationalConstants v0.2.6 [692b3bcd] JLLWrappers v1.7.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [21216c6a] Preferences v1.5.1 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.9.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [3bb67fe8] TranscodingStreams v0.11.3 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... WARNING: method definition for == at /home/pkgeval/.julia/packages/GenomicFeatures/tOEn1/src/position.jl:57 declares type variable T but does not use it. 1 dependency had output during precompilation: ┌ GenomicFeatures │ [Output was shown above] └ Test Summary: | Pass Total Time GenomicFeatures | 120 120 40.7s Testing GenomicFeatures tests passed Testing completed after 125.08s PkgEval succeeded after 254.64s