Package evaluation to test FlxQTL on Julia 1.14.0-DEV.1584 (ac5fadde9b*) started at 2026-01-18T17:37:53.802


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 9.99s


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# Installation
#

Installing FlxQTL...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [ede81e08] + FlxQTL v3.0.3
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [66dad0bd] + AliasTables v1.1.3
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.19.3
  [8bb1440f] + DelimitedFiles v1.9.1
  [31c24e10] + Distributions v0.25.123
  [ffbed154] + DocStringExtensions v0.9.5
  [1a297f60] + FillArrays v1.16.0
  [ede81e08] + FlxQTL v3.0.3
  [34004b35] + HypergeometricFunctions v0.3.28
  [92d709cd] + IrrationalConstants v0.2.6
  [692b3bcd] + JLLWrappers v1.7.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [30fc2ffe] + LossFunctions v1.2.0
  [e1d29d7a] + Missings v1.2.0
  [bac558e1] + OrderedCollections v1.8.1
  [90014a1f] + PDMats v0.11.37
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.1
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [189a3867] + Reexport v1.2.2
  [79098fc4] + Rmath v0.9.0
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.6.1
  [90137ffa] + StaticArrays v1.9.16
  [1e83bf80] + StaticArraysCore v1.4.4
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.8.0
  [2913bbd2] + StatsBase v0.34.10
  [4c63d2b9] + StatsFuns v1.5.2
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.13.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [8e850b90] + libblastrampoline_jll v5.15.0+0

Installation completed after 5.04s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...
Precompiling packages...
   1921.4 ms  ✓ LossFunctions
   6675.3 ms  ✓ FlxQTL
  2 dependencies successfully precompiled in 11 seconds. 56 already precompiled.

Precompilation completed after 29.15s


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# Testing
#

     Testing FlxQTL
      Status `/tmp/jl_OprkfO/Project.toml`
  [8bb1440f] DelimitedFiles v1.9.1
  [31c24e10] Distributions v0.25.123
  [ede81e08] FlxQTL v3.0.3
  [30fc2ffe] LossFunctions v1.2.0
  [90137ffa] StaticArrays v1.9.16
  [10745b16] Statistics v1.11.1
  [2913bbd2] StatsBase v0.34.10
  [8ba89e20] Distributed v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_OprkfO/Manifest.toml`
  [66dad0bd] AliasTables v1.1.3
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.19.3
  [8bb1440f] DelimitedFiles v1.9.1
  [31c24e10] Distributions v0.25.123
  [ffbed154] DocStringExtensions v0.9.5
  [1a297f60] FillArrays v1.16.0
  [ede81e08] FlxQTL v3.0.3
  [34004b35] HypergeometricFunctions v0.3.28
  [92d709cd] IrrationalConstants v0.2.6
  [692b3bcd] JLLWrappers v1.7.1
  [2ab3a3ac] LogExpFunctions v0.3.29
  [30fc2ffe] LossFunctions v1.2.0
  [e1d29d7a] Missings v1.2.0
  [bac558e1] OrderedCollections v1.8.1
  [90014a1f] PDMats v0.11.37
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.1
  [43287f4e] PtrArrays v1.3.0
  [1fd47b50] QuadGK v2.11.2
  [189a3867] Reexport v1.2.2
  [79098fc4] Rmath v0.9.0
  [a2af1166] SortingAlgorithms v1.2.2
  [276daf66] SpecialFunctions v2.6.1
  [90137ffa] StaticArrays v1.9.16
  [1e83bf80] StaticArraysCore v1.4.4
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.8.0
  [2913bbd2] StatsBase v0.34.10
  [4c63d2b9] StatsFuns v1.5.2
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.13.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.7+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [8e850b90] libblastrampoline_jll v5.15.0+0
     Testing Running tests...
Positive definiteness dropping chromosome 1 is true.
Positive definiteness dropping chromosome 2 is true.
Test Passed
Test Passed
Kinship dropping chromosome 1 is corrected to be positive definite:isposdef(K_loco[:,:,l])
Kinship dropping chromosome 2 is corrected to be positive definite:isposdef(K_loco[:,:,l])
Test Passed
Test Passed
Kinship dropping chromosome 1 is corrected to be positive definite:isposdef(K_loco[:,:,l])
Kinship dropping chromosome 2 is corrected to be positive definite:isposdef(K_loco[:,:,l])
Test Passed
Test Passed
Test PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest Passed
Test Passed
Test Passed
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Test Passed
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Test Passed
Test PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedKinship dropping chromosome 1 is corrected to be positive definite
Kinship dropping chromosome 2 is corrected to be positive definite
Test PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest Passed 10.004915 seconds (47.18 M allocations: 7.414 GiB, 12.91% gc time)
  0.023641 seconds (82.18 k allocations: 12.380 MiB, 37.03% gc time)
  9.850096 seconds (47.18 M allocations: 7.415 GiB, 12.73% gc time)
 10.435878 seconds (47.18 M allocations: 7.415 GiB, 15.15% gc time)
Test PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest Passed
Test Passed
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Test Passed
Test Passed
Test Passed
  5.197634 seconds (23.17 M allocations: 3.641 GiB, 17.98% gc time)
 27.220515 seconds (125.84 M allocations: 18.057 GiB, 12.34% gc time)
  5.065894 seconds (23.17 M allocations: 3.642 GiB, 18.15% gc time)
  5.351665 seconds (23.17 M allocations: 3.642 GiB, 17.47% gc time)
Test Passed
Test Passed
Test Passed
Test Passed
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Test Passed
Test Passed
Test Summary: | Pass  Total      Time
FlxQTL.jl     |  244    244  13m30.2s
     Testing FlxQTL tests passed 

Testing completed after 732.67s

PkgEval succeeded after 895.92s