Package evaluation to test OnlinePCA on Julia 1.14.0-DEV.1563 (14ca1abc72*) started at 2026-01-16T00:34:40.256 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 9.81s ################################################################################ # Installation # Installing OnlinePCA... Resolving package versions... Installed WebIO ──── v0.8.21 Installed PlotlyJS ─ v0.18.17 Updating `~/.julia/environments/v1.14/Project.toml` [975b03d1] + OnlinePCA v0.3.10 Updating `~/.julia/environments/v1.14/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [c7e460c6] + ArgParse v1.2.0 [bf4720bc] + AssetRegistry v0.1.0 [d1d4a3ce] + BitFlags v0.1.9 [ad839575] + Blink v0.12.9 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.7 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.15.0 [53c48c17] + FixedPointNumbers v0.8.5 [de31a74c] + FunctionalCollections v0.5.0 [38e38edf] + GLM v1.9.2 [f67ccb44] + HDF5 v0.17.2 [cd3eb016] + HTTP v1.10.19 [9fb69e20] + Hiccup v0.2.2 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [97c1335a] + JSExpr v0.5.4 ⌅ [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [50d2b5c4] + Lazy v0.15.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [4d4711f2] + MatrixMarket v0.5.2 [739be429] + MbedTLS v1.1.9 [e1d29d7a] + Missings v1.2.0 [ffc61752] + Mustache v1.0.21 [a975b10e] + Mux v1.0.2 [510215fc] + Observables v0.5.5 [975b03d1] + OnlinePCA v0.3.10 [4d8831e6] + OpenSSL v1.6.1 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [a03496cd] + PlotlyBase v0.8.23 [f0f68f2c] + PlotlyJS v0.18.17 [f2990250] + PlotlyKaleido v2.3.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [91c51154] + SentinelArrays v1.4.9 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.8 [892a3eda] + StringManipulation v0.4.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [b718987f] + TextWrap v1.0.2 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [0f1e0344] + WebIO v0.8.21 [104b5d7c] + WebSockets v1.6.0 [cc8bc4a8] + Widgets v0.6.7 [76eceee3] + WorkerUtilities v1.6.1 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [f7e6163d] + Kaleido_jll v0.2.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] + libaec_jll v1.1.4+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building WebIO ───→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0eef0765186f7452e52236fa42ca8c9b3c11c6e3/build.log` Building PlotlyJS → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/287e092914da6c91f002aafcf82a2ec065bf94a3/build.log` Installation completed after 29.32s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 16988.4 ms ✓ PlotlyBase → DataFramesExt 22691.4 ms ✓ PlotlyJS → DataFramesExt 21341.6 ms ✓ OnlinePCA 3 dependencies successfully precompiled in 69 seconds. 161 already precompiled. Precompilation completed after 92.6s ################################################################################ # Testing # Testing OnlinePCA Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_8GZmt1/Project.toml` [31c24e10] ↑ Distributions v0.25.111 ⇒ v0.25.123 [1a297f60] ↑ FillArrays v1.12.0 ⇒ v1.15.0 [975b03d1] + OnlinePCA v0.3.10 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [37e2e46d] ~ LinearAlgebra ⇒ v1.13.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.13.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_8GZmt1/Manifest.toml` [bf4720bc] + AssetRegistry v0.1.0 [d1d4a3ce] + BitFlags v0.1.9 [ad839575] + Blink v0.12.9 [336ed68f] + CSV v0.10.15 [944b1d66] ↑ CodecZlib v0.7.6 ⇒ v0.7.8 [6b39b394] + CodecZstd v0.8.7 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] ↑ Compat v4.16.0 ⇒ v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [a93c6f00] + DataFrames v1.8.1 [864edb3b] ↑ DataStructures v0.18.20 ⇒ v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] ↑ Distributions v0.25.111 ⇒ v0.25.123 [ffbed154] ↑ DocStringExtensions v0.9.3 ⇒ v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [1a297f60] ↑ FillArrays v1.12.0 ⇒ v1.15.0 [53c48c17] + FixedPointNumbers v0.8.5 [de31a74c] + FunctionalCollections v0.5.0 [38e38edf] + GLM v1.9.2 [f67ccb44] + HDF5 v0.17.2 [cd3eb016] + HTTP v1.10.19 [9fb69e20] + Hiccup v0.2.2 [34004b35] ↑ HypergeometricFunctions v0.3.24 ⇒ v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] ↑ IrrationalConstants v0.2.2 ⇒ v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] ↑ JLLWrappers v1.5.0 ⇒ v1.7.1 [97c1335a] + JSExpr v0.5.4 ⌅ [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [50d2b5c4] + Lazy v0.15.1 [2ab3a3ac] ↑ LogExpFunctions v0.3.28 ⇒ v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.9 [ffc61752] + Mustache v1.0.21 [a975b10e] + Mux v1.0.2 [510215fc] + Observables v0.5.5 [975b03d1] + OnlinePCA v0.3.10 [4d8831e6] + OpenSSL v1.6.1 [bac558e1] ↑ OrderedCollections v1.6.3 ⇒ v1.8.1 [90014a1f] ↑ PDMats v0.11.31 ⇒ v0.11.37 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [a03496cd] + PlotlyBase v0.8.23 [f0f68f2c] + PlotlyJS v0.18.17 [f2990250] + PlotlyKaleido v2.3.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] ↑ Preferences v1.4.3 ⇒ v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] ↑ PtrArrays v1.2.0 ⇒ v1.3.0 [1fd47b50] ↑ QuadGK v2.10.1 ⇒ v2.11.2 [ae029012] + Requires v1.3.1 [79098fc4] ↑ Rmath v0.7.1 ⇒ v0.9.0 [91c51154] + SentinelArrays v1.4.9 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] ↑ SortingAlgorithms v1.2.1 ⇒ v1.2.2 [276daf66] ↑ SpecialFunctions v2.4.0 ⇒ v2.6.1 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [82ae8749] ↑ StatsAPI v1.7.0 ⇒ v1.8.0 [2913bbd2] ↑ StatsBase v0.34.3 ⇒ v0.34.10 [4c63d2b9] ↑ StatsFuns v1.3.1 ⇒ v1.5.2 [3eaba693] + StatsModels v0.7.8 [892a3eda] + StringManipulation v0.4.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] ↑ TranscodingStreams v0.11.2 ⇒ v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [0f1e0344] + WebIO v0.8.21 [104b5d7c] + WebSockets v1.6.0 [cc8bc4a8] + Widgets v0.6.7 [76eceee3] + WorkerUtilities v1.6.1 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [f7e6163d] + Kaleido_jll v0.2.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [c8ffd9c3] ↑ MbedTLS_jll v2.28.2+1 ⇒ v2.28.1010+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.9+0 [efe28fd5] ↑ OpenSpecFun_jll v0.5.5+0 ⇒ v0.5.6+0 [f50d1b31] ↑ Rmath_jll v0.4.3+0 ⇒ v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] + libaec_jll v1.1.4+0 [0dad84c5] ↑ ArgTools v1.1.1 ⇒ v1.1.2 [56f22d72] ~ Artifacts ⇒ v1.11.0 [2a0f44e3] ~ Base64 ⇒ v1.11.0 [ade2ca70] ~ Dates ⇒ v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] ↑ Downloads v1.6.0 ⇒ v1.7.0 [7b1f6079] ~ FileWatching ⇒ v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] ↑ LibCURL v0.6.4 ⇒ v1.0.0 [76f85450] ~ LibGit2 ⇒ v1.11.0 [8f399da3] ~ Libdl ⇒ v1.11.0 [37e2e46d] ~ LinearAlgebra ⇒ v1.13.0 [56ddb016] ~ Logging ⇒ v1.11.0 [d6f4376e] ~ Markdown ⇒ v1.11.0 [a63ad114] ~ Mmap ⇒ v1.11.0 [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0 [44cfe95a] ↑ Pkg v1.10.0 ⇒ v1.14.0 [de0858da] ~ Printf ⇒ v1.11.0 [3fa0cd96] ~ REPL ⇒ v1.11.0 [9a3f8284] ~ Random ⇒ v1.11.0 [ea8e919c] ↑ SHA v0.7.0 ⇒ v1.0.0 [9e88b42a] ~ Serialization ⇒ v1.11.0 [6462fe0b] ~ Sockets ⇒ v1.11.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.13.0 [f489334b] + StyledStrings v1.13.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] ~ UUIDs ⇒ v1.11.0 [4ec0a83e] ~ Unicode ⇒ v1.11.0 [e66e0078] ↑ CompilerSupportLibraries_jll v1.1.1+0 ⇒ v1.3.0+1 [deac9b47] ↑ LibCURL_jll v8.4.0+0 ⇒ v8.18.0+0 [e37daf67] ↑ LibGit2_jll v1.6.4+0 ⇒ v1.9.2+0 [29816b5a] ↑ LibSSH2_jll v1.11.0+1 ⇒ v1.11.3+1 [14a3606d] ↑ MozillaCACerts_jll v2023.1.10 ⇒ v2025.12.2 [4536629a] ↑ OpenBLAS_jll v0.3.23+4 ⇒ v0.3.29+0 [05823500] ↑ OpenLibm_jll v0.8.1+2 ⇒ v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] ↑ SuiteSparse_jll v7.2.1+1 ⇒ v7.10.1+0 [83775a58] ↑ Zlib_jll v1.2.13+1 ⇒ v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] ↑ libblastrampoline_jll v5.8.0+1 ⇒ v5.15.0+0 [8e850ede] ↑ nghttp2_jll v1.52.0+1 ⇒ v1.68.0+1 [3f19e933] ↑ p7zip_jll v17.4.0+2 ⇒ v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_8GZmt1/Project.toml` [c7e460c6] ArgParse v1.2.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.123 [1a297f60] FillArrays v1.15.0 [4d4711f2] MatrixMarket v0.5.2 [975b03d1] OnlinePCA v0.3.10 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.13.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_8GZmt1/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [c7e460c6] ArgParse v1.2.0 [bf4720bc] AssetRegistry v0.1.0 [d1d4a3ce] BitFlags v0.1.9 [ad839575] Blink v0.12.9 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.7 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [460bff9d] ExceptionUnwrapping v0.1.11 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [53c48c17] FixedPointNumbers v0.8.5 [de31a74c] FunctionalCollections v0.5.0 [38e38edf] GLM v1.9.2 [f67ccb44] HDF5 v0.17.2 [cd3eb016] HTTP v1.10.19 [9fb69e20] Hiccup v0.2.2 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [97c1335a] JSExpr v0.5.4 ⌅ [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [50d2b5c4] Lazy v0.15.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [4d4711f2] MatrixMarket v0.5.2 [739be429] MbedTLS v1.1.9 [e1d29d7a] Missings v1.2.0 [ffc61752] Mustache v1.0.21 [a975b10e] Mux v1.0.2 [510215fc] Observables v0.5.5 [975b03d1] OnlinePCA v0.3.10 [4d8831e6] OpenSSL v1.6.1 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 [a03496cd] PlotlyBase v0.8.23 [f0f68f2c] PlotlyJS v0.18.17 [f2990250] PlotlyKaleido v2.3.1 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [91c51154] SentinelArrays v1.4.9 [1277b4bf] ShiftedArrays v2.0.0 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.8 [892a3eda] StringManipulation v0.4.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [b718987f] TextWrap v1.0.2 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [ea10d353] WeakRefStrings v1.4.2 [0f1e0344] WebIO v0.8.21 [104b5d7c] WebSockets v1.6.0 [cc8bc4a8] Widgets v0.6.7 [76eceee3] WorkerUtilities v1.6.1 ⌅ [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.2+0 [f7e6163d] Kaleido_jll v0.2.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.9+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] libaec_jll v1.1.4+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("0f1e0344-ec1d-5b48-a673-e5cf874b6c29"), "WebIO") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2873  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2725  [4] macro expansion  @ ./loading.jl:2653 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2617  [7] require  @ ./loading.jl:2593 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using  @ ./module.jl:137 [inlined]  [11] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [12] top-level scope  @ ~/.julia/packages/PlotlyJS/60kan/src/PlotlyJS.jl:18  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3309  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3151  [18] include_string  @ ./loading.jl:3161 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [20] _start()  @ Base ./client.jl:585 in expression starting at /home/pkgeval/.julia/packages/PlotlyJS/60kan/src/PlotlyJS.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("336ed68f-0bac-5ca0-87d4-7b16caf5d00b"), "CSV") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2873  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2725  [4] macro expansion  @ ./loading.jl:2653 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2617  [7] require  @ ./loading.jl:2593 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using  @ ./module.jl:137 [inlined]  [11] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [12] top-level scope  @ ~/.julia/packages/PlotlyJS/60kan/ext/CSVExt.jl:4  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3309  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3151  [18] include_string  @ ./loading.jl:3161 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [20] _start()  @ Base ./client.jl:585 in expression starting at /home/pkgeval/.julia/packages/PlotlyJS/60kan/ext/CSVExt.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("a93c6f00-e57d-5684-b7b6-d8193f3e46c0"), "DataFrames") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2873  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2725  [4] macro expansion  @ ./loading.jl:2653 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2617  [7] require  @ ./loading.jl:2593 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using  @ ./module.jl:137 [inlined]  [11] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [12] top-level scope  @ ~/.julia/packages/PlotlyJS/60kan/ext/DataFramesExt.jl:4  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3309  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3151  [18] include_string  @ ./loading.jl:3161 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [20] _start()  @ Base ./client.jl:585 in expression starting at /home/pkgeval/.julia/packages/PlotlyJS/60kan/ext/DataFramesExt.jl:1 in expression starting at stdin:5 ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for OnlinePCA [975b03d1-ab45-5730-8389-540698ac00dc] │ exception = Required dependency Base.PkgId(Base.UUID("8bb1440f-4735-579b-a4ab-409b98df4dab"), "DelimitedFiles") failed to load from a cache file. └ @ Base loading.jl:2950 /tmp/jl_028Rr1 Running all tests... ####### Binarization of CSV (Julia API) ####### 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 ####### Binarization of CSV (Command line) ####### WARNING: Imported binding Logging.termlength was undeclared at import time during import to WebSockets. WARNING: Imported binding Logging.showvalue was undeclared at import time during import to WebSockets. 1 dependency had output during precompilation: ┌ WebSockets │ WARNING: Imported binding Logging.termlength was undeclared at import time during import to WebSockets. │ WARNING: Imported binding Logging.showvalue was undeclared at import time during import to WebSockets. └ Parsed args: binfile => /tmp/jl_028Rr1/Data.zst csvfile => /tmp/jl_028Rr1/Data.csv 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 ####### Binarization of MM (Julia API) ####### ####### Binarization of MM (Command line) ####### Parsed args: mmfile => /tmp/jl_028Rr1/Data.mtx binfile => /tmp/jl_028Rr1/Data.mtx.zst ####### Binarization of Binary COO (Julia API) ####### ####### Binarization of Binary COO (Command line) ####### Parsed args: bincoofile => /tmp/jl_028Rr1/Data.bincoo binfile => /tmp/jl_028Rr1/Data.bincoo.zst ####### Summarization (Julia API) ####### 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Command line) ####### Parsed args: binfile => /tmp/jl_028Rr1/Data.zst outdir => /tmp/jl_BxRm8W pseudocount => 1.0 mode => dense 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Julia API) ####### 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Command line) ####### Parsed args: binfile => /tmp/jl_028Rr1/Data.mtx.zst outdir => /tmp/jl_UhlptI pseudocount => 1.0 mode => sparse_mm 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### HVG (Julia API) ####### Highly Variable Genes are calculated... ####### HVG (Command line) ####### Parsed args: rowvarlist => /tmp/jl_BxRm8W/Feature_Vars.csv binfile => /tmp/jl_028Rr1/Data.zst outdir => /tmp/jl_BxRm8W rowcv2list => /tmp/jl_BxRm8W/Feature_CV2s.csv rowmeanlist => /tmp/jl_BxRm8W/Feature_Means.csv Highly Variable Genes are calculated... ####### Filtering (Julia API) ####### ####### Filtering (Command line) ####### Parsed args: input => /tmp/jl_028Rr1/Data.zst samplelist => /tmp/jl_BxRm8W/Sample_NoCounts.csv outdir => /tmp/jl_BxRm8W thr2 => 10 direct1 => + direct2 => + featurelist => /tmp/jl_BxRm8W/Feature_Means.csv thr1 => 10 Parsed args: input => /tmp/jl_028Rr1/Data.zst samplelist => outdir => /tmp/jl_BxRm8W thr2 => 10 direct1 => + direct2 => + featurelist => /tmp/jl_BxRm8W/Feature_Means.csv thr1 => 10 Parsed args: input => /tmp/jl_028Rr1/Data.zst samplelist => /tmp/jl_BxRm8W/Sample_NoCounts.csv outdir => /tmp/jl_BxRm8W thr2 => 10 direct1 => + direct2 => + featurelist => thr1 => 10 ####### GD (Julia API) ####### ####### GD (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => "/tmp/jl_BxRm8W/Eigen_vectors.csv" scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => "/tmp/jl_BxRm8W/Loadings.csv" Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing ####### Oja (Julia API) ####### Progress: 1%|▎ | ETA: 0:01:13 Progress: 1%|▍ | ETA: 0:01:27 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 Progress: 1%|▎ | ETA: 0:00:53 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 Progress: 1%|▎ | ETA: 0:01:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 Progress: 1%|▎ | ETA: 0:01:13 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 ####### Oja (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:06:30 Progress: 1%|▌ | ETA: 0:03:52 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:07:23 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:08:06 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:07:44 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 ####### SGD (Julia API) ####### Progress: 1%|▎ | ETA: 0:01:16 Progress: 1%|▍ | ETA: 0:01:28 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 Progress: 1%|▎ | ETA: 0:01:12 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 Progress: 1%|▎ | ETA: 0:01:31 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 Progress: 1%|▎ | ETA: 0:01:58 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 ####### SGD (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:06:50 Progress: 1%|▍ | ETA: 0:05:34 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:07:15 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:08:40 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:09:00 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 ####### CCIPCA (Julia API) ####### Progress: 1%|▎ | ETA: 0:01:50 Progress: 1%|▍ | ETA: 0:01:55 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### CCIPCA (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing lower => 0 stepsize => "1.0e-15" dim => "3" rowvarlist => "" offsetStoch => 1.0f-15 expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" upper => 1.0f38 numepoch => "1" initV => nothing Progress: 1%|▎ | ETA: 0:09:34 Progress: 1%|▍ | ETA: 0:07:23 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 ####### RSGD (Julia API) ####### Progress: 1%|▎ | ETA: 0:06:01 Progress: 1%|▍ | ETA: 0:04:40 Progress: 34%|██████████████▏ | ETA: 0:00:06 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Progress: 1%|▎ | ETA: 0:01:16 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 Progress: 1%|▎ | ETA: 0:01:57 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 Progress: 1%|▎ | ETA: 0:02:03 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 ####### RSGD (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:12:47 Progress: 1%|▍ | ETA: 0:09:35 Progress: 34%|█████████████▊ | ETA: 0:00:13 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:13:14 Progress: 34%|█████████████▊ | ETA: 0:00:12 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:13:58 Progress: 34%|█████████████▊ | ETA: 0:00:13 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:13:53 Progress: 34%|█████████████▊ | ETA: 0:00:12 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 ####### SVRG (Julia API) ####### Progress: 1%|▎ | ETA: 0:03:30 Progress: 1%|▍ | ETA: 0:03:53 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:03:48 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:03:49 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:03:53 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### SVRG (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:15:41 Progress: 1%|▍ | ETA: 0:12:29 Progress: 100%|█████████████████████████████████████████| Time: 0:00:07 Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:16:39 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:16:44 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:12:33 Progress: 100%|█████████████████████████████████████████| Time: 0:00:05 ####### RSVRG (Julia API) ####### Progress: 1%|▎ | ETA: 0:02:25 Progress: 1%|▍ | ETA: 0:02:49 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:02:40 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:02:40 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:03:02 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### RSVRG (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:19:06 Progress: 1%|▍ | ETA: 0:14:43 Progress: 34%|█████████████▊ | ETA: 0:00:19 Progress: 100%|█████████████████████████████████████████| Time: 0:00:09 Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:19:58 Progress: 34%|█████████████▊ | ETA: 0:00:17 Progress: 100%|█████████████████████████████████████████| Time: 0:00:08 Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:22:09 Progress: 34%|█████████████▊ | ETA: 0:00:19 Progress: 100%|█████████████████████████████████████████| Time: 0:00:09 Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:21:26 Progress: 34%|█████████████▊ | ETA: 0:00:19 Progress: 100%|█████████████████████████████████████████| Time: 0:00:09 ####### Orthogonal Iteration (Julia API) ####### Progress: 0%|▏ | ETA: 0:03:24 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### Orthogonal Iteration (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing lower => 0 dim => "3" rowvarlist => "" expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" upper => 1.0f38 numepoch => "3" initV => nothing Progress: 0%|▏ | ETA: 0:22:21 Progress: 33%|█████████████▊ | ETA: 0:00:10 Progress: 100%|█████████████████████████████████████████| Time: 0:00:05 ####### Randomized Block Krylov Iteration (Julia API) ####### Progress: 0%|▏ | ETA: 0:00:47 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 Q' A Q' A' A svd(Q' A' A) Q*U ####### Randomized Block Krylov Iteration (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing lower => 0 dim => "3" rowvarlist => "" expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" upper => 1.0f38 numepoch => "3" initV => nothing Progress: 0%|▏ | ETA: 0:20:20 Progress: 33%|█████████████▊ | ETA: 0:00:08 Progress: 100%|█████████████████████████████████████████| Time: 0:00:05 Q' A Q' A' A svd(Q' A' A) Q*U ####### ARNOLDI (Julia API) ####### Progress: 20%|████████▎ | ETA: 0:00:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 ####### ARNOLDI (Command line) ####### Parsed args: scale => "ftt" dim => "3" rowvarlist => "" expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" numepoch => "3" Progress: 67%|███████████████████████████▍ | ETA: 0:00:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 ####### LANCZOS (Julia API) ####### Progress: 20%|████████▎ | ETA: 0:00:00 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 ####### LANCZOS (Command line) ####### Parsed args: scale => "ftt" dim => "3" rowvarlist => "" expvar => 0.1f0 input => "/tmp/jl_028Rr1/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" numepoch => "3" Progress: 67%|███████████████████████████▍ | ETA: 0:00:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### HALKO (Julia API) ####### Random Projection : Y = A Ω Progress: 1%|▎ | ETA: 0:00:51 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 QR factorization : Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Calculation of small matrix : B = Q' A SVD with small matrix : svd(B) ####### HALKO (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing dim => "3" rowvarlist => "" input => "/tmp/jl_028Rr1/Data.zst" noversamples => 5 niter => 3 perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" initV => nothing Random Projection : Y = A Ω Progress: 1%|▎ | ETA: 0:05:14 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 QR factorization : Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) Progress: 1%|▎ | ETA: 0:01:18 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Calculation of small matrix : B = Q' A SVD with small matrix : svd(B) ####### ALGORITHM971 (Julia API) ####### Random Projection : Y = A Ω LU factorization : L = lu(Y) Normalized power iterations (1/3) : A' L L = lu(A' L) Normalized power iterations (2/3) : Y = A lu(A' L) Normalized power iterations (3/3) : L = lu(A lu(A' L)) Normalized power iterations (1/3) : A' L L = lu(A' L) Normalized power iterations (2/3) : Y = A lu(A' L) Normalized power iterations (3/3) : L = lu(A lu(A' L)) Normalized power iterations (1/3) : A' L L = lu(A' L) Normalized power iterations (2/3) : Y = A lu(A' L) QR factorization (3/3) : Q = qr(A lu(A' L)) Calculation of small matrix : B = Q' A SVD with small matrix : svd(B) ####### ALGORITHM971 (Command line) ####### ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 656 running 1 of 1 signal (10): User defined signal 1 setproperty! at ./Base_compiler.jl:61 [inlined] _resize! at ./iobuffer.jl:546 ensureroom_slowpath at ./iobuffer.jl:655 ensureroom at ./iobuffer.jl:612 [inlined] unsafe_write at ./iobuffer.jl:898 write at ./strings/io.jl:237 [inlined] _replace_finish at ./strings/util.jl:1031 _replace_ at ./strings/util.jl:1097 #replace#422 at ./strings/util.jl:1153 [inlined] replace at ./strings/util.jl:1153 [inlined] restore_depot_path at ./loading.jl:3685 [inlined] resolve_depot at ./loading.jl:3691 parse_cache_header at ./loading.jl:3819 sort_by at ./loading.jl:1401 _broadcast_getindex_evalf at ./broadcast.jl:698 [inlined] _broadcast_getindex at ./broadcast.jl:671 [inlined] _getindex at ./broadcast.jl:619 [inlined] getindex at ./broadcast.jl:615 [inlined] macro expansion at ./broadcast.jl:994 [inlined] macro expansion at ./simdloop.jl:77 [inlined] copyto! at ./broadcast.jl:993 [inlined] copyto! at ./broadcast.jl:946 [inlined] copy at ./broadcast.jl:918 [inlined] materialize at ./broadcast.jl:893 [inlined] find_all_in_cache_path at ./loading.jl:1421 #_require_search_from_serialized#901 at ./loading.jl:2269 _require_search_from_serialized at ./loading.jl:2209 [inlined] __require_prelocked at ./loading.jl:2866 _require_prelocked at ./loading.jl:2725 macro expansion at ./loading.jl:2653 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2617 jfptr___require_65174.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2285 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:908 require at ./loading.jl:2593 [inlined] eval_import_path at ./module.jl:36 [inlined] eval_import_path_all at ./module.jl:60 _eval_using at ./module.jl:137 [inlined] _eval_using at ./module.jl:137 jfptr__eval_using_55566.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:765 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:779 ijl_toplevel_eval_in at /source/src/toplevel.c:824 eval at ./boot.jl:489 include_string at ./loading.jl:3151 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3211 include at ./Base.jl:309 exec_options at ./client.jl:344 _start at ./client.jl:585 jfptr__start_69827.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2285 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7a72c6ec2249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 142 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_36034.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2285 [inlined] start_task at /source/src/task.c:1275 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007ccd22e8d2d0 Total snapshots: 523. Utilization: 0% ╎523 @Base/task.jl:1168 wait_forever() 522╎ 523 @Base/task.jl:1246 wait() ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_36034.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2285 [inlined] start_task at /source/src/task.c:1275 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007fe50db9fd00 Total snapshots: 408. Utilization: 0% ╎408 @Base/task.jl:1168 wait_forever() 407╎ 408 @Base/task.jl:1246 wait() ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007a72ac9fc010 Total snapshots: 302. Utilization: 100% ╎300 @Base/client.jl:585 _start() ╎ 300 @Base/client.jl:344 exec_options(opts::Base.JLOptions) ╎ 300 @Base/Base.jl:309 include(mod::Module, _path::String) ╎ 300 @Base/loading.jl:3211 _include(mapexpr::Function, mod::Module, _pat… ╎ 300 @Base/loading.jl:3151 include_string(mapexpr::typeof(identity), mo… ╎ 300 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 300 @Base/module.jl:137 _eval_using(to::Module, path::Expr) ╎ ╎ 300 @Base/module.jl:137 _eval_using ╎ ╎ 300 @Base/module.jl:60 eval_import_path_all(at::Module, path::Expr… ╎ ╎ 300 @Base/module.jl:36 eval_import_path ╎ ╎ 300 @Base/loading.jl:2593 require ╎ ╎ ╎ 300 @Base/loading.jl:2617 __require(into::Module, mod::Symbol) ╎ ╎ ╎ 300 @Base/lock.jl:376 macro expansion ╎ ╎ ╎ 300 @Base/loading.jl:2653 macro expansion ╎ ╎ ╎ 300 @Base/loading.jl:2725 _require_prelocked(uuidkey::Base.P… ╎ ╎ ╎ 300 @Base/loading.jl:2866 __require_prelocked(pkg::Base.Pkg… ╎ ╎ ╎ ╎ 300 @Base/loading.jl:2209 _require_search_from_serialized ╎ ╎ ╎ ╎ 49 @Base/loading.jl:2269 _require_search_from_serialized… ╎ ╎ ╎ ╎ 15 @Base/loading.jl:1382 find_all_in_cache_path(pkg::Ba… ╎ ╎ ╎ ╎ 15 @Base/file.jl:1034 readdir ╎ ╎ ╎ ╎ 15 @Base/file.jl:1034 #readdir#23 ╎ ╎ ╎ ╎ ╎ 15 @Base/file.jl:1098 _readdir 15╎ ╎ ╎ ╎ ╎ 15 @Base/file.jl:1103 _readdir(dir::String; return_… ╎ ╎ ╎ ╎ 1 @Base/loading.jl:1389 find_all_in_cache_path(pkg::Ba… ╎ ╎ ╎ ╎ 1 @Base/loading.jl:10 isfile_casesensitive ╎ ╎ ╎ ╎ 1 @Base/loading.jl:97 isaccessiblefile(file::String) ╎ ╎ ╎ ╎ ╎ 1 @Base/stat.jl:587 isfile 1╎ ╎ ╎ ╎ ╎ 1 @Base/stat.jl:192 stat(path::String) ╎ ╎ ╎ ╎ 33 @Base/loading.jl:1421 find_all_in_cache_path(pkg::Ba… ╎ ╎ ╎ ╎ 33 @Base/…adcast.jl:893 materialize ╎ ╎ ╎ ╎ 33 @Base/…dcast.jl:918 copy ╎ ╎ ╎ ╎ ╎ 33 @Base/…dcast.jl:946 copyto! ╎ ╎ ╎ ╎ ╎ 33 @Base/…cast.jl:993 copyto! ╎ ╎ ╎ ╎ ╎ 33 @Base/…loop.jl:77 macro expansion ╎ ╎ ╎ ╎ ╎ 33 @Base/…cast.jl:994 macro expansion ╎ ╎ ╎ ╎ ╎ 33 @Base/…ast.jl:615 getindex ╎ ╎ ╎ ╎ ╎ ╎ 33 @Base/…ast.jl:619 _getindex ╎ ╎ ╎ ╎ ╎ ╎ 33 @Base/…st.jl:671 _broadcast_getindex ╎ ╎ ╎ ╎ ╎ ╎ 33 @Base/…st.jl:698 _broadcast_getindex_evalf ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ng.jl:1396 (::Base.var"#sort_by#fi… ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…am.jl:389 open ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…am.jl:390 open(fname::String, mo… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…am.jl:0 open ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…am.jl:306 open ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…am.jl:320 open(fname::String; … ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…am.jl:32 IOStream ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…am.jl:25 IOStream ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:622 zeros ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:626 zeros ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:688 Array ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:676 Array ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ng.jl:1398 (::Base.var"#sort_by#fi… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ng.jl:3630 isvalid_cache_header(f… ╎ ╎ ╎ ╎ ╎ ╎ 25 @Base/…ng.jl:1401 (::Base.var"#sort_by#fi… ╎ ╎ ╎ ╎ ╎ ╎ 6 @Base/…ng.jl:3782 parse_cache_header(f::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ng.jl:3720 _parse_cache_header(f… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…am.jl:450 read(s::IOStream, T::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ck.jl:272 unlock ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ck.jl:276 (::Base.var"#_unloc… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…er.jl:86 setproperty! ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ng.jl:3772 _parse_cache_header(f… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ng.jl:3701 read_module_list(f::… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ng.jl:0 String ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ng.jl:3703 read_module_list(f::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…am.jl:450 read(s::IOStream, T:… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ck.jl:272 unlock 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:159 enable_finalizers ╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/…ng.jl:3776 _parse_cache_header(f… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ng.jl:3943 srctext_files(f::IOS… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…am.jl:43 eof(s::IOStream) 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…am.jl:262 _eof_nolock ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ng.jl:3949 srctext_files(f::IOS… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…am.jl:43 seek(s::IOStream, n::… ╎ ╎ ╎ ╎ ╎ ╎ 18 @Base/…ng.jl:3819 parse_cache_header(f::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 18 @Base/…ng.jl:3691 resolve_depot(inc::St… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ng.jl:3685 restore_depot_path ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…il.jl:1153 replace ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…il.jl:1153 #replace#422 ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…il.jl:1091 _replace_(str::St… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…il.jl:1008 _replace_init(st… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…le.jl:354 map ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…il.jl:1009 #_replace_init… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ex.jl:641 findnext ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ex.jl:0 _findnext_re(re… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +1 1 @Base/…re.jl:205 _exec(re::Ptr… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ex.jl:501 _findnext_re(… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +1 1 @Base/…ic.jl:503 prevind 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +2 1 @Base/…ic.jl:0 prevind(s::Stri… 16╎ ╎ ╎ ╎ ╎ ╎ ╎ 16 @Base/…at.jl:377 ispath(path::String) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ng.jl:3840 parse_cache_header(f::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ng.jl:3685 restore_depot_path ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…il.jl:1153 replace ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…il.jl:1153 #replace#422 ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…il.jl:1097 _replace_(str::Str… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…il.jl:1024 _replace_finish(i… ╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/…ng.jl:1405 (::Base.var"#sort_by#fi… 3╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/…am.jl:43 close(s::IOStream) ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ng.jl:1410 (::Base.var"#sort_by#fi… ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…at.jl:587 mtime 2╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…at.jl:192 stat(path::String) ╎ ╎ ╎ ╎ 61 @Base/loading.jl:2271 _require_search_from_serialized… ╎ ╎ ╎ ╎ 61 @Base/loading.jl:4259 stale_cachefile ╎ ╎ ╎ ╎ 1 @Base/…ading.jl:4271 stale_cachefile(modkey::Base.P… 1╎ ╎ ╎ ╎ 1 @Base/…ading.jl:3630 isvalid_cache_header(f::IOStr… ╎ ╎ ╎ ╎ 11 @Base/…ading.jl:4277 stale_cachefile(modkey::Base.P… ╎ ╎ ╎ ╎ 4 @Base/…ading.jl:3782 parse_cache_header(f::IOStrea… ╎ ╎ ╎ ╎ ╎ 4 @Base/…ding.jl:3776 _parse_cache_header(f::IOStre… ╎ ╎ ╎ ╎ ╎ 2 @Base/…ding.jl:3943 srctext_files(f::IOStream, s… ╎ ╎ ╎ ╎ ╎ 2 @Base/…ream.jl:43 eof(s::IOStream) 2╎ ╎ ╎ ╎ ╎ 2 @Base/…ream.jl:262 _eof_nolock ╎ ╎ ╎ ╎ ╎ 1 @Base/…ding.jl:3946 srctext_files(f::IOStream, s… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ream.jl:620 read ╎ ╎ ╎ ╎ ╎ 1 @Base/…ream.jl:624 #read#648 ╎ ╎ ╎ ╎ ╎ 1 @Base/…eam.jl:575 readbytes! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…eam.jl:576 #readbytes!#647 ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…am.jl:522 readbytes_all!(s::IOStream… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ck.jl:195 lock ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ck.jl:171 trylock 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ck.jl:176 _trylock(rl::ReentrantL… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ding.jl:3949 srctext_files(f::IOStream, s… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ream.jl:43 seek(s::IOStream, n::UInt64) ╎ ╎ ╎ ╎ 7 @Base/…ading.jl:3819 parse_cache_header(f::IOStrea… ╎ ╎ ╎ ╎ ╎ 7 @Base/…ding.jl:3691 resolve_depot(inc::String) 7╎ ╎ ╎ ╎ ╎ 7 @Base/stat.jl:377 ispath(path::String) ╎ ╎ ╎ ╎ 1 @Base/…ading.jl:4313 stale_cachefile(modkey::Base.P… ╎ ╎ ╎ ╎ 1 @Base/stat.jl:587 isfile 1╎ ╎ ╎ ╎ ╎ 1 @Base/stat.jl:192 stat(path::String) ╎ ╎ ╎ ╎ 2 @Base/…ading.jl:4411 stale_cachefile(modkey::Base.P… ╎ ╎ ╎ ╎ 2 @Base/…ading.jl:474 identify_package(where::Base.P… ╎ ╎ ╎ ╎ ╎ 2 @Base/lock.jl:376 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Base/…ding.jl:379 identify_package_env(where::B… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ding.jl:868 environment_deps_get(env::St… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ing.jl:1172 explicit_manifest_deps_get(… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:1245 iterate ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:1245 iterate ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:1253 _iterate_abstractarray ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:964 getindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:385 checkbounds ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:381 checkbounds ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:11 length 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:10 size 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ding.jl:398 identify_package_env(where::B… ╎ ╎ ╎ ╎ 3 @Base/…ading.jl:4418 stale_cachefile(modkey::Base.P… ╎ ╎ ╎ ╎ 1 @Base/…ading.jl:4205 any_includes_stale(includes::… 1╎ ╎ ╎ ╎ ╎ 1 @Base/stat.jl:377 ispath(path::String) ╎ ╎ ╎ ╎ 1 @Base/…ading.jl:4229 any_includes_stale(includes::… 1╎ ╎ ╎ ╎ ╎ 1 @Base/stat.jl:192 stat(path::String) ╎ ╎ ╎ ╎ 1 @Base/…ading.jl:4236 any_includes_stale(includes::… ╎ ╎ ╎ ╎ ╎ 1 @Base/io.jl:424 open ╎ ╎ ╎ ╎ ╎ 1 @Base/io.jl:427 open(::typeof(Base._crc32c), ::S… ╎ ╎ ╎ ╎ ╎ 1 @Base/util.jl:535 _crc32c ╎ ╎ ╎ ╎ ╎ 1 @Base/util.jl:535 _crc32c ╎ ╎ ╎ ╎ ╎ 1 @Base/util.jl:527 _crc32c(io::IOStream, nb::I… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…eam.jl:43 eof(s::IOStream) 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…am.jl:262 _eof_nolock ╎ ╎ ╎ ╎ 2 @Base/…ading.jl:4423 stale_cachefile(modkey::Base.P… ╎ ╎ ╎ ╎ 2 @Base/…ading.jl:3638 isvalid_file_crc ╎ ╎ ╎ ╎ ╎ 2 @Base/util.jl:523 _crc32c ╎ ╎ ╎ ╎ ╎ 2 @Base/util.jl:528 _crc32c(io::IOStream, nb::Int6… ╎ ╎ ╎ ╎ ╎ 2 @Base/…ream.jl:575 readbytes! ╎ ╎ ╎ ╎ ╎ 2 @Base/…ream.jl:575 readbytes! ╎ ╎ ╎ ╎ ╎ 2 @Base/…eam.jl:576 #readbytes!#647 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…eam.jl:533 readbytes_all!(s::IOStream… ╎ ╎ ╎ ╎ 41 @Base/…ading.jl:4430 stale_cachefile(modkey::Base.P… ╎ ╎ ╎ ╎ 41 @Base/…ading.jl:3644 isvalid_pkgimage_crc(f::IOStr… ╎ ╎ ╎ ╎ ╎ 41 @Base/io.jl:424 open ╎ ╎ ╎ ╎ ╎ 41 @Base/io.jl:427 open(::typeof(Base._crc32c), ::S… ╎ ╎ ╎ ╎ ╎ 41 @Base/util.jl:535 _crc32c ╎ ╎ ╎ ╎ ╎ 41 @Base/util.jl:535 _crc32c ╎ ╎ ╎ ╎ ╎ 9 @Base/util.jl:527 _crc32c(io::IOStream, nb::I… ╎ ╎ ╎ ╎ ╎ ╎ 9 @Base/…eam.jl:43 eof(s::IOStream) 9╎ ╎ ╎ ╎ ╎ ╎ 9 @Base/…am.jl:262 _eof_nolock ╎ ╎ ╎ ╎ ╎ 29 @Base/util.jl:528 _crc32c(io::IOStream, nb::I… ╎ ╎ ╎ ╎ ╎ ╎ 29 @Base/…eam.jl:575 readbytes! ╎ ╎ ╎ ╎ ╎ ╎ 29 @Base/…am.jl:575 readbytes! ╎ ╎ ╎ ╎ ╎ ╎ 29 @Base/…am.jl:576 #readbytes!#647 29╎ ╎ ╎ ╎ ╎ ╎ 29 @Base/…am.jl:533 readbytes_all!(s::IOStre… ╎ ╎ ╎ ╎ ╎ 3 @Base/util.jl:529 _crc32c(io::IOStream, nb::I… 3╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/util.jl:509 unsafe_crc32c 1╎ ╎ ╎ ╎ 1 @Base/loading.jl:2275 _require_search_from_serialized… ╎ ╎ ╎ ╎ 189 @Base/loading.jl:2302 _require_search_from_serialized… ╎ ╎ ╎ ╎ 189 @Base/loading.jl:1440 _include_from_serialized 170╎ ╎ ╎ ╎ 170 @Base/…ading.jl:1464 _include_from_serialized(pkg::… ╎ ╎ ╎ ╎ 19 @Base/…ading.jl:1481 _include_from_serialized(pkg::… ╎ ╎ ╎ ╎ 19 @Compiler/…r.jl:657 insert_backedges_typeinf ╎ ╎ ╎ ╎ ╎ 5 @Compiler/…r.jl:75 insert_backedges(internal_meth… ╎ ╎ ╎ ╎ ╎ 5 @Compiler/….jl:198 scan_new_methods!(internal_me… ╎ ╎ ╎ ╎ ╎ 2 @Compiler/….jl:176 scan_new_method! 2╎ ╎ ╎ ╎ ╎ 2 @Base/…als.jl:1612 _uncompressed_ir ╎ ╎ ╎ ╎ ╎ 3 @Compiler/….jl:178 scan_new_method! 1╎ ╎ ╎ ╎ ╎ 1 @Compiler/….jl:13 foreachgr(visit::Base.Compil… ╎ ╎ ╎ ╎ ╎ 1 @Compiler/….jl:14 foreachgr(visit::Base.Compil… 1╎ ╎ ╎ ╎ ╎ 1 @Compiler/…jl:644 userefs ╎ ╎ ╎ ╎ ╎ 1 @Compiler/….jl:15 foreachgr(visit::Base.Compil… ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…jl:578 getindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…jl:534 _useref_getindex(stmt::Any… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:581 is_relevant_expr ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…le.jl:664 in 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…le.jl:0 sym_in(x::Symbol, itr::NTu… ╎ ╎ ╎ ╎ ╎ 14 @Compiler/…r.jl:77 insert_backedges(internal_meth… ╎ ╎ ╎ ╎ ╎ 14 @Compiler/…r.jl:87 scan_new_code!(internal_metho… ╎ ╎ ╎ ╎ ╎ 14 @Compiler/….jl:101 verify_method_graph(codeinst… ╎ ╎ ╎ ╎ ╎ 11 @Compiler/….jl:231 verify_method(codeinst::Cor… ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…jl:472 verify_call(sig::Any, expec… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:980 getindex ╎ ╎ ╎ ╎ ╎ 10 @Compiler/…jl:574 verify_call(sig::Any, expec… 10╎ ╎ ╎ ╎ ╎ ╎ 10 @Base/…ls.jl:1603 _methods_by_ftype ╎ ╎ ╎ ╎ ╎ 2 @Compiler/….jl:237 verify_method(codeinst::Cor… ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…jl:574 verify_call(sig::Any, expec… 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ls.jl:1603 _methods_by_ftype ╎ ╎ ╎ ╎ ╎ 1 @Compiler/….jl:333 verify_method(codeinst::Cor… 1╎ ╎ ╎ ╎ ╎ 1 @Compiler/…jl:805 store_backedges(caller::Cor… Parsed args: scale => "ftt" logdir => "/tmp/jl_BxRm8W" initW => nothing dim => "3" rowvarlist => "" input => "/tmp/jl_028Rr1/Data.zst" noversamples => 5 niter => 3 perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_BxRm8W/Feature_FTTMeans.csv" cper => 1.0f0 outdir => "/tmp/jl_BxRm8W" initV => nothing [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 [142] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/test/test_algorithm971.jl:17 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_36034.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2285 [inlined] start_task at /source/src/task.c:1275 unknown function (ip: (nil)) at (unknown file) Allocations: 79135175 (Pool: 79133934; Big: 1241); GC: 82 wait_forever at ./task.jl:1168 jfptr_wait_forever_36034.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2285 [inlined] start_task at /source/src/task.c:1275 unknown function (ip: (nil)) at (unknown file) Allocations: 26839359 (Pool: 26838673; Big: 686); GC: 18 [656] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/bin/algorithm971:93 _ZN4llvm4UsernwEmNS0_28IntrusiveOperandsAllocMarkerE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13IRBuilderBase10CreateICmpENS_7CmpInst9PredicateEPNS_5ValueES4_RKNS_5TwineE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13VPInstruction8generateERNS_16VPTransformStateE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13VPInstruction7executeERNS_16VPTransformStateE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm12VPBasicBlock14executeRecipesEPNS_16VPTransformStateEPNS_10BasicBlockE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13VPRegionBlock7executeEPNS_16VPTransformStateE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm5VPlan7executeEPNS_16VPTransformStateE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm24LoopVectorizationPlanner11executePlanENS_12ElementCountEjRNS_5VPlanERNS_19InnerLoopVectorizerEPNS_13DominatorTreeEbPKNS_8DenseMapIPKNS_4SCEVEPNS_5ValueENS_12DenseMapInfoISB_vEENS_6detail12DenseMapPairISB_SD_EEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm17LoopVectorizePass11processLoopEPNS_4LoopE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm17LoopVectorizePass7runImplERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm17LoopVectorizePass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:787 operator() at /source/src/jitlayers.cpp:1516 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1477 [inlined] operator() at /source/src/jitlayers.cpp:1652 [inlined] addModule at /source/src/jitlayers.cpp:2110 jl_compile_codeinst_now at /source/src/jitlayers.cpp:685 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:879 jl_compile_method_internal at /source/src/gf.c:3648 _jl_invoke at /source/src/gf.c:4108 [inlined] ijl_apply_generic at /source/src/gf.c:4313 #init##0 at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/src/Utils.jl:985 #open#318 at ./io.jl:427 open at ./io.jl:424 [inlined] init at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/src/Utils.jl:978 #algorithm971#92 at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/src/algorithm971.jl:36 algorithm971 at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/src/algorithm971.jl:33 unknown function (ip: 0x7a72a8929d54) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 main at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/bin/algorithm971:71 unknown function (ip: 0x7a72a890d65f) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:765 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:779 ijl_toplevel_eval_in at /source/src/toplevel.c:824 eval at ./boot.jl:489 include_string at ./loading.jl:3151 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3211 include at ./Base.jl:309 exec_options at ./client.jl:344 _start at ./client.jl:585 jfptr__start_69827.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2285 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7a72c6ec2249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 15998336 (Pool: 15998083; Big: 253); GC: 17 PkgEval terminated after 2734.91s: test duration exceeded the time limit