Package evaluation to test BioFindr on Julia 1.14.0-DEV.1563 (14ca1abc72*) started at 2026-01-16T00:20:54.641 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 10.71s ################################################################################ # Installation # Installing BioFindr... Resolving package versions... Installed OpenSSH_jll ───────────────── v10.2.1+0 Installed ChunkCodecLibZstd ─────────── v1.0.0 Installed URIs ──────────────────────── v1.6.1 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed MacroTools ────────────────── v0.5.16 Installed FillArrays ────────────────── v1.15.0 Installed DataStructures ────────────── v0.19.3 Installed JLD2 ──────────────────────── v0.6.3 Installed InlineStrings ─────────────── v1.4.5 Installed Adapt ─────────────────────── v4.4.0 Installed KernelDensity ─────────────── v0.6.10 Installed MetaGraphsNext ────────────── v0.7.5 Installed AbstractTrees ─────────────── v0.4.5 Installed MKL_jll ───────────────────── v2025.2.0+0 Installed HypergeometricFunctions ───── v0.3.28 Installed ArnoldiMethod ─────────────── v0.4.0 Installed oneTBB_jll ────────────────── v2022.0.0+1 Installed AliasTables ───────────────── v1.1.3 Installed ConcurrentUtilities ───────── v2.5.0 Installed ScientificTypes ───────────── v3.1.2 Installed CodecZlib ─────────────────── v0.7.8 Installed StatsBase ─────────────────── v0.34.10 Installed LiveServer ────────────────── v1.5.0 Installed TranscodingStreams ────────── v0.11.3 Installed ExceptionUnwrapping ───────── v0.1.11 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Compat ────────────────────── v4.18.1 Installed HashArrayMappedTries ──────── v0.2.0 Installed DataAPI ───────────────────── v1.16.0 Installed OrderedCollections ────────── v1.8.1 Installed Statistics ────────────────── v1.11.1 Installed Git_LFS_jll ───────────────── v3.7.0+0 Installed IntelOpenMP_jll ───────────── v2025.2.0+0 Installed InvertedIndices ───────────── v1.3.1 Installed StatsAPI ──────────────────── v1.8.0 Installed DataValueInterfaces ───────── v1.0.0 Installed PrecompileTools ───────────── v1.3.3 Installed MIMEs ─────────────────────── v0.1.4 Installed SentinelArrays ────────────── v1.4.9 Installed MbedTLS ───────────────────── v1.1.9 Installed OffsetArrays ──────────────── v1.17.0 Installed OpenSSL ───────────────────── v1.6.1 Installed FileIO ────────────────────── v1.17.1 Installed MarkdownAST ───────────────── v0.1.2 Installed StaticArrays ──────────────── v1.9.16 Installed LoggingExtras ─────────────── v1.2.0 Installed StaticArraysCore ──────────── v1.4.4 Installed ChainRulesCore ────────────── v1.26.0 Installed StructUtils ───────────────── v2.6.2 Installed Expat_jll ─────────────────── v2.7.3+0 Installed IrrationalConstants ───────── v0.2.6 Installed AbstractFFTs ──────────────── v1.5.0 Installed QuadGK ────────────────────── v2.11.2 Installed Ratios ────────────────────── v0.4.5 Installed LazilyInitializedFields ───── v1.3.0 Installed Documenter ────────────────── v1.16.1 Installed ColorTypes ────────────────── v0.12.1 Installed StringManipulation ────────── v0.4.2 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed SimpleTraits ──────────────── v0.9.5 Installed Requires ──────────────────── v1.3.1 Installed HTTP ──────────────────────── v1.10.19 Installed AxisAlgorithms ────────────── v1.1.0 Installed LogExpFunctions ───────────── v0.3.29 Installed Interpolations ────────────── v0.16.2 Installed ChunkCodecLibZlib ─────────── v1.0.0 Installed BitFlags ──────────────────── v0.1.9 Installed Git_jll ───────────────────── v2.52.0+0 Installed PrettyTables ──────────────── v3.1.2 Installed JSON ──────────────────────── v1.4.0 Installed Parsers ───────────────────── v2.8.3 Installed Rmath ─────────────────────── v0.9.0 Installed ScopedValues ──────────────── v1.5.0 Installed Distributions ─────────────── v0.25.123 Installed WoodburyMatrices ──────────── v1.1.0 Installed IOCapture ─────────────────── v1.0.0 Installed StatsFuns ─────────────────── v1.5.2 Installed Tables ────────────────────── v1.12.1 Installed PtrArrays ─────────────────── v1.3.0 Installed Git ───────────────────────── v1.5.0 Installed Reexport ──────────────────── v1.2.2 Installed FixedPointNumbers ─────────── v0.8.5 Installed SpecialFunctions ──────────── v2.6.1 Installed Preferences ───────────────── v1.5.1 Installed SimpleBufferStream ────────── v1.2.0 Installed DataFrames ────────────────── v1.8.1 Installed Missings ──────────────────── v1.2.0 Installed FFTW_jll ──────────────────── v3.3.11+0 Installed ScientificTypesBase ───────── v3.0.0 Installed PooledArrays ──────────────── v1.4.3 Installed RegistryInstances ─────────── v0.1.0 Installed BioFindr ──────────────────── v1.0.5 Installed FFTW ──────────────────────── v1.10.0 Installed JLLWrappers ───────────────── v1.7.1 Installed TableTraits ───────────────── v1.0.1 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed MbedTLS_jll ───────────────── v2.28.1010+0 Installed LaTeXStrings ──────────────── v1.4.0 Installed ChunkCodecCore ────────────── v1.0.1 Installed PDMats ────────────────────── v0.11.37 Installed Crayons ───────────────────── v4.1.1 Installed SortingAlgorithms ─────────── v1.2.2 Installed StatisticalTraits ─────────── v3.5.0 Installed Inflate ───────────────────── v0.1.5 Installed ANSIColoredPrinters ───────── v0.0.1 Installed DocStringExtensions ───────── v0.9.5 Installed CategoricalArrays ─────────── v1.0.2 Installed Graphs ────────────────────── v1.13.3 Installing 9 artifacts Installed artifact Rmath 121.9 KiB Installed artifact Expat 283.3 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact MbedTLS 2.2 MiB Installed artifact FFTW 2.2 MiB Installed artifact Libiconv 1.9 MiB Installed artifact OpenSSH 4.3 MiB Installed artifact Git_LFS 9.6 MiB Installed artifact Git 49.3 MiB Updating `~/.julia/environments/v1.14/Project.toml` [77580646] + BioFindr v1.0.5 Updating `~/.julia/environments/v1.14/Manifest.toml` [a4c015fc] + ANSIColoredPrinters v0.0.1 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [13072b0f] + AxisAlgorithms v1.1.0 [77580646] + BioFindr v1.0.5 [d1d4a3ce] + BitFlags v0.1.9 [324d7699] + CategoricalArrays v1.0.2 [d360d2e6] + ChainRulesCore v1.26.0 [0b6fb165] + ChunkCodecCore v1.0.1 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [e30172f5] + Documenter v1.16.1 [460bff9d] + ExceptionUnwrapping v0.1.11 [7a1cc6ca] + FFTW v1.10.0 [5789e2e9] + FileIO v1.17.1 [1a297f60] + FillArrays v1.15.0 [53c48c17] + FixedPointNumbers v0.8.5 [d7ba0133] + Git v1.5.0 [86223c79] + Graphs v1.13.3 [cd3eb016] + HTTP v1.10.19 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [b5f81e59] + IOCapture v1.0.0 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.5 [a98d9a8b] + Interpolations v0.16.2 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.6.3 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.4.0 [5ab0869b] + KernelDensity v0.6.10 [b964fa9f] + LaTeXStrings v1.4.0 [0e77f7df] + LazilyInitializedFields v1.3.0 [16fef848] + LiveServer v1.5.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 ⌅ [6c6e2e6c] + MIMEs v0.1.4 [1914dd2f] + MacroTools v0.5.16 [d0879d2d] + MarkdownAST v0.1.2 [739be429] + MbedTLS v1.1.9 [fa8bd995] + MetaGraphsNext v0.7.5 [e1d29d7a] + Missings v1.2.0 [6fe1bfb0] + OffsetArrays v1.17.0 [4d8831e6] + OpenSSL v1.6.1 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [189a3867] + Reexport v1.2.2 [2792f1a3] + RegistryInstances v0.1.0 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [321657f4] + ScientificTypes v3.1.2 [30f210dd] + ScientificTypesBase v3.0.0 [7e506255] + ScopedValues v1.5.0 [91c51154] + SentinelArrays v1.4.9 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [892a3eda] + StringManipulation v0.4.2 [ec057cc2] + StructUtils v2.6.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [efce3f68] + WoodburyMatrices v1.1.0 [2e619515] + Expat_jll v2.7.3+0 [f5851436] + FFTW_jll v3.3.11+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.52.0+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [9bd350c2] + OpenSSH_jll v10.2.1+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 15.38s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4373.2 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling packages... 4551.1 ms ✓ MacroTools 1666.7 ms ✓ InlineStrings 825.5 ms ✓ Reexport 2049.8 ms ✓ IrrationalConstants 846.6 ms ✓ DataValueInterfaces 1025.6 ms ✓ StatsAPI 961.0 ms ✓ LazilyInitializedFields 1045.5 ms ✓ Inflate 1321.8 ms ✓ TranscodingStreams 917.2 ms ✓ LaTeXStrings 1010.4 ms ✓ ChunkCodecCore 1159.0 ms ✓ Statistics 1073.8 ms ✓ StaticArraysCore 842.3 ms ✓ PtrArrays 881.8 ms ✓ SimpleBufferStream 1047.5 ms ✓ ANSIColoredPrinters 1165.1 ms ✓ DataAPI 1198.1 ms ✓ URIs 1139.0 ms ✓ InvertedIndices 1112.2 ms ✓ BitFlags 1582.6 ms ✓ AbstractTrees 1314.2 ms ✓ AbstractFFTs 2107.8 ms ✓ FillArrays 941.4 ms ✓ ScientificTypesBase 2788.7 ms ✓ MIMEs 1265.4 ms ✓ OrderedCollections 942.7 ms ✓ HashArrayMappedTries 1143.5 ms ✓ DocStringExtensions 1648.1 ms ✓ OffsetArrays 792.5 ms ✓ IteratorInterfaceExtensions 1807.7 ms ✓ Crayons 894.0 ms ✓ IOCapture 1169.0 ms ✓ Requires 1793.1 ms ✓ ConcurrentUtilities 1743.2 ms ✓ PDMats 1414.4 ms ✓ WoodburyMatrices 2202.7 ms ✓ SentinelArrays 1126.3 ms ✓ LoggingExtras 1549.7 ms ✓ StructUtils 1354.6 ms ✓ Compat 1311.7 ms ✓ Preferences 1585.5 ms ✓ ExceptionUnwrapping 3450.1 ms ✓ SimpleTraits 5577.6 ms ✓ RegistryInstances 1029.9 ms ✓ CodecZlib 1358.3 ms ✓ ChunkCodecLibZlib 1244.0 ms ✓ ChunkCodecLibZstd 1522.7 ms ✓ Statistics → SparseArraysExt 4134.5 ms ✓ FixedPointNumbers 1045.6 ms ✓ AliasTables 1031.3 ms ✓ Missings 1159.1 ms ✓ PooledArrays 3944.7 ms ✓ OpenSSL 1823.2 ms ✓ MarkdownAST 4521.7 ms ✓ AbstractFFTs → AbstractFFTsTestExt 1698.4 ms ✓ FillArrays → FillArraysSparseArraysExt 1646.5 ms ✓ FillArrays → FillArraysStatisticsExt 1451.5 ms ✓ StatisticalTraits 3664.5 ms ✓ DataStructures 921.1 ms ✓ ScopedValues 1460.6 ms ✓ LogExpFunctions 916.6 ms ✓ TableTraits 874.4 ms ✓ Ratios 993.9 ms ✓ Adapt 8955.8 ms ✓ FileIO 1449.3 ms ✓ FillArrays → FillArraysPDMatsExt 1446.4 ms ✓ AxisAlgorithms 901.6 ms ✓ Compat → CompatLinearAlgebraExt 957.0 ms ✓ PrecompileTools 1679.4 ms ✓ JLLWrappers 2788.8 ms ✓ ColorTypes 1122.2 ms ✓ SortingAlgorithms 2310.4 ms ✓ QuadGK 1808.1 ms ✓ Tables 1037.3 ms ✓ Ratios → RatiosFixedPointNumbersExt 1357.9 ms ✓ Adapt → AdaptSparseArraysExt 895.8 ms ✓ OffsetArrays → OffsetArraysAdaptExt 2756.1 ms ✓ ChainRulesCore 3182.2 ms ✓ CategoricalArrays 3243.4 ms ✓ StringManipulation 13770.6 ms ✓ StaticArrays 16417.6 ms ✓ Parsers 46411.4 ms ✓ JLD2 1338.2 ms ✓ Rmath_jll 1329.8 ms ✓ OpenSpecFun_jll 4407.3 ms ✓ IntelOpenMP_jll 4333.5 ms ✓ oneTBB_jll 1341.1 ms ✓ Git_LFS_jll 1344.8 ms ✓ FFTW_jll 1503.1 ms ✓ OpenSSH_jll 1457.4 ms ✓ Libiconv_jll 1430.6 ms ✓ MbedTLS_jll 1362.9 ms ✓ Expat_jll 1298.1 ms ✓ ColorTypes → StyledStringsExt 4670.1 ms ✓ StatsBase 922.6 ms ✓ StructUtils → StructUtilsTablesExt 1404.9 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 904.6 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 3407.8 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 1027.3 ms ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt 37393.8 ms ✓ PrettyTables 3832.7 ms ✓ ArnoldiMethod 1424.7 ms ✓ StaticArrays → StaticArraysStatisticsExt 1530.4 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1399.5 ms ✓ Adapt → AdaptStaticArraysExt 6829.2 ms ✓ JSON 1000.0 ms ✓ InlineStrings → ParsersExt 1540.2 ms ✓ Rmath 5001.5 ms ✓ SpecialFunctions  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB 10870.4 ms ✓ MKL_jll 2097.9 ms ✓ MbedTLS 1497.4 ms ✓ Git_jll 1452.0 ms ✓ PDMats → StatsBaseExt 1615.3 ms ✓ CategoricalArrays → CategoricalArraysStatsBaseExt 82049.1 ms ✓ DataFrames 9550.1 ms ✓ Graphs 4223.7 ms ✓ Interpolations 1182.6 ms ✓ CategoricalArrays → CategoricalArraysJSONExt 3955.8 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2189.8 ms ✓ HypergeometricFunctions 6588.7 ms ✓ FFTW 23485.6 ms ✓ HTTP 958.4 ms ✓ Git 9597.8 ms ✓ MetaGraphsNext 3250.6 ms ✓ Graphs → GraphsSharedArraysExt 2963.7 ms ✓ StatsFuns 4243.4 ms ✓ LiveServer 6138.9 ms ✓ FileIO → HTTPExt 50791.0 ms ✓ Documenter 3857.4 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 9488.1 ms ✓ Distributions 3478.3 ms ✓ Distributions → DistributionsTestExt 2976.4 ms ✓ Distributions → DistributionsChainRulesCoreExt 5901.3 ms ✓ ScientificTypes 3973.8 ms ✓ KernelDensity 18237.4 ms ✓ BioFindr 136 dependencies successfully precompiled in 587 seconds. 41 already precompiled. 1 dependency had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ Precompilation completed after 599.29s ################################################################################ # Testing # Testing BioFindr Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_UJnhRT/Project.toml` [77580646] + BioFindr v1.0.5 [a93c6f00] ↑ DataFrames v1.6.1 ⇒ v1.8.1 [31c24e10] ↑ Distributions v0.25.107 ⇒ v0.25.123 [5ab0869b] ↑ KernelDensity v0.6.8 ⇒ v0.6.10 [321657f4] ↑ ScientificTypes v3.0.2 ⇒ v3.1.2 [276daf66] ↑ SpecialFunctions v2.3.1 ⇒ v2.6.1 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [2913bbd2] ↑ StatsBase v0.34.2 ⇒ v0.34.10 [de0858da] ~ Printf ⇒ v1.11.0 [9a3f8284] ~ Random ⇒ v1.11.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_UJnhRT/Manifest.toml` [a4c015fc] + ANSIColoredPrinters v0.0.1 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] ↑ Adapt v4.0.1 ⇒ v4.4.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [77580646] + BioFindr v1.0.5 [d1d4a3ce] + BitFlags v0.1.9 [49dc2e85] - Calculus v0.5.1 [324d7699] ↑ CategoricalArrays v0.10.8 ⇒ v1.0.2 [d360d2e6] ↑ ChainRulesCore v1.20.1 ⇒ v1.26.0 [0b6fb165] + ChunkCodecCore v1.0.1 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [944b1d66] + CodecZlib v0.7.8 [3da002f7] ↑ ColorTypes v0.11.5 ⇒ v0.12.1 [34da2185] ↑ Compat v4.12.0 ⇒ v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a93c6f00] ↑ DataFrames v1.6.1 ⇒ v1.8.1 [864edb3b] ↑ DataStructures v0.18.16 ⇒ v0.19.3 [31c24e10] ↑ Distributions v0.25.107 ⇒ v0.25.123 [ffbed154] ↑ DocStringExtensions v0.9.3 ⇒ v0.9.5 [e30172f5] + Documenter v1.16.1 [fa6b7ba4] - DualNumbers v0.6.8 [460bff9d] + ExceptionUnwrapping v0.1.11 [7a1cc6ca] ↑ FFTW v1.8.0 ⇒ v1.10.0 [5789e2e9] + FileIO v1.17.1 [1a297f60] ↑ FillArrays v1.9.3 ⇒ v1.15.0 [d7ba0133] + Git v1.5.0 [86223c79] + Graphs v1.13.3 [cd3eb016] + HTTP v1.10.19 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] ↑ HypergeometricFunctions v0.3.23 ⇒ v0.3.28 [b5f81e59] + IOCapture v1.0.0 [d25df0c9] + Inflate v0.1.5 [842dd82b] ↑ InlineStrings v1.4.1 ⇒ v1.4.5 [a98d9a8b] ↑ Interpolations v0.15.1 ⇒ v0.16.2 [41ab1584] ↑ InvertedIndices v1.3.0 ⇒ v1.3.1 [92d709cd] ↑ IrrationalConstants v0.2.2 ⇒ v0.2.6 [033835bb] + JLD2 v0.6.3 [692b3bcd] ↑ JLLWrappers v1.5.0 ⇒ v1.7.1 [682c06a0] + JSON v1.4.0 [5ab0869b] ↑ KernelDensity v0.6.8 ⇒ v0.6.10 [b964fa9f] ↑ LaTeXStrings v1.3.1 ⇒ v1.4.0 [0e77f7df] + LazilyInitializedFields v1.3.0 [16fef848] + LiveServer v1.5.0 [2ab3a3ac] ↑ LogExpFunctions v0.3.26 ⇒ v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 ⌅ [6c6e2e6c] + MIMEs v0.1.4 [1914dd2f] + MacroTools v0.5.16 [d0879d2d] + MarkdownAST v0.1.2 [739be429] + MbedTLS v1.1.9 [fa8bd995] + MetaGraphsNext v0.7.5 [e1d29d7a] ↑ Missings v1.1.0 ⇒ v1.2.0 [77ba4419] - NaNMath v1.0.2 [6fe1bfb0] ↑ OffsetArrays v1.13.0 ⇒ v1.17.0 [4d8831e6] + OpenSSL v1.6.1 [bac558e1] ↑ OrderedCollections v1.6.3 ⇒ v1.8.1 [90014a1f] ↑ PDMats v0.11.31 ⇒ v0.11.37 [69de0a69] ↑ Parsers v2.8.1 ⇒ v2.8.3 [aea7be01] ↑ PrecompileTools v1.2.0 ⇒ v1.3.3 [21216c6a] ↑ Preferences v1.4.1 ⇒ v1.5.1 [08abe8d2] ↑ PrettyTables v2.3.2 ⇒ v3.1.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] ↑ QuadGK v2.9.4 ⇒ v2.11.2 [2792f1a3] + RegistryInstances v0.1.0 [ae029012] ↑ Requires v1.3.0 ⇒ v1.3.1 [79098fc4] ↑ Rmath v0.7.1 ⇒ v0.9.0 [321657f4] ↑ ScientificTypes v3.0.2 ⇒ v3.1.2 [7e506255] + ScopedValues v1.5.0 [91c51154] ↑ SentinelArrays v1.4.3 ⇒ v1.4.9 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] ↑ SortingAlgorithms v1.2.1 ⇒ v1.2.2 [276daf66] ↑ SpecialFunctions v2.3.1 ⇒ v2.6.1 [90137ffa] ↑ StaticArrays v1.9.2 ⇒ v1.9.16 [1e83bf80] ↑ StaticArraysCore v1.4.2 ⇒ v1.4.4 [64bff920] ↑ StatisticalTraits v3.4.0 ⇒ v3.5.0 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [82ae8749] ↑ StatsAPI v1.7.0 ⇒ v1.8.0 [2913bbd2] ↑ StatsBase v0.34.2 ⇒ v0.34.10 [4c63d2b9] ↑ StatsFuns v1.3.0 ⇒ v1.5.2 [892a3eda] ↑ StringManipulation v0.3.4 ⇒ v0.4.2 [ec057cc2] + StructUtils v2.6.2 [bd369af6] ↑ Tables v1.11.1 ⇒ v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [efce3f68] ↑ WoodburyMatrices v1.0.0 ⇒ v1.1.0 [2e619515] + Expat_jll v2.7.3+0 [f5851436] ↑ FFTW_jll v3.3.10+0 ⇒ v3.3.11+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.52.0+0 [1d5cc7b8] ↑ IntelOpenMP_jll v2024.0.2+0 ⇒ v2025.2.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] ↑ MKL_jll v2024.0.0+0 ⇒ v2025.2.0+0 [c8ffd9c3] ↑ MbedTLS_jll v2.28.2+1 ⇒ v2.28.1010+0 [9bd350c2] + OpenSSH_jll v10.2.1+0 [efe28fd5] ↑ OpenSpecFun_jll v0.5.5+0 ⇒ v0.5.6+0 [f50d1b31] ↑ Rmath_jll v0.4.0+0 ⇒ v0.5.1+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] ↑ ArgTools v1.1.1 ⇒ v1.1.2 [56f22d72] ~ Artifacts ⇒ v1.11.0 [2a0f44e3] ~ Base64 ⇒ v1.11.0 [ade2ca70] ~ Dates ⇒ v1.11.0 [8ba89e20] ~ Distributed ⇒ v1.11.0 [f43a241f] ↑ Downloads v1.6.0 ⇒ v1.7.0 [7b1f6079] ~ FileWatching ⇒ v1.11.0 [9fa8497b] ~ Future ⇒ v1.11.0 [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] ~ LazyArtifacts ⇒ v1.11.0 [b27032c2] ↑ LibCURL v0.6.4 ⇒ v1.0.0 [76f85450] ~ LibGit2 ⇒ v1.11.0 [8f399da3] ~ Libdl ⇒ v1.11.0 [37e2e46d] ~ LinearAlgebra ⇒ v1.13.0 [56ddb016] ~ Logging ⇒ v1.11.0 [d6f4376e] ~ Markdown ⇒ v1.11.0 [a63ad114] ~ Mmap ⇒ v1.11.0 [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0 [44cfe95a] ↑ Pkg v1.10.0 ⇒ v1.14.0 [de0858da] ~ Printf ⇒ v1.11.0 [3fa0cd96] ~ REPL ⇒ v1.11.0 [9a3f8284] ~ Random ⇒ v1.11.0 [ea8e919c] ↑ SHA v0.7.0 ⇒ v1.0.0 [9e88b42a] ~ Serialization ⇒ v1.11.0 [1a1011a3] ~ SharedArrays ⇒ v1.11.0 [6462fe0b] ~ Sockets ⇒ v1.11.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.13.0 [f489334b] + StyledStrings v1.13.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] ~ UUIDs ⇒ v1.11.0 [4ec0a83e] ~ Unicode ⇒ v1.11.0 [e66e0078] ↑ CompilerSupportLibraries_jll v1.0.5+1 ⇒ v1.3.0+1 [deac9b47] ↑ LibCURL_jll v8.4.0+0 ⇒ v8.18.0+0 [e37daf67] ↑ LibGit2_jll v1.6.4+0 ⇒ v1.9.2+0 [29816b5a] ↑ LibSSH2_jll v1.11.0+1 ⇒ v1.11.3+1 [14a3606d] ↑ MozillaCACerts_jll v2023.1.10 ⇒ v2025.12.2 [4536629a] ↑ OpenBLAS_jll v0.3.23+2 ⇒ v0.3.29+0 [05823500] ↑ OpenLibm_jll v0.8.1+2 ⇒ v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] ↑ SuiteSparse_jll v7.2.1+1 ⇒ v7.10.1+0 [83775a58] ↑ Zlib_jll v1.2.13+1 ⇒ v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] ↑ libblastrampoline_jll v5.8.0+1 ⇒ v5.15.0+0 [8e850ede] ↑ nghttp2_jll v1.52.0+1 ⇒ v1.68.0+1 [3f19e933] ↑ p7zip_jll v17.4.0+2 ⇒ v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_UJnhRT/Project.toml` [77580646] BioFindr v1.0.5 [a93c6f00] DataFrames v1.8.1 [31c24e10] Distributions v0.25.123 [5ab0869b] KernelDensity v0.6.10 [321657f4] ScientificTypes v3.1.2 [276daf66] SpecialFunctions v2.6.1 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.10 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_UJnhRT/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [13072b0f] AxisAlgorithms v1.1.0 [77580646] BioFindr v1.0.5 [d1d4a3ce] BitFlags v0.1.9 [324d7699] CategoricalArrays v1.0.2 [d360d2e6] ChainRulesCore v1.26.0 [0b6fb165] ChunkCodecCore v1.0.1 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.16.1 [460bff9d] ExceptionUnwrapping v0.1.11 [7a1cc6ca] FFTW v1.10.0 [5789e2e9] FileIO v1.17.1 [1a297f60] FillArrays v1.15.0 [53c48c17] FixedPointNumbers v0.8.5 [d7ba0133] Git v1.5.0 [86223c79] Graphs v1.13.3 [cd3eb016] HTTP v1.10.19 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v1.0.0 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.5 [a98d9a8b] Interpolations v0.16.2 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.6.3 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.4.0 [5ab0869b] KernelDensity v0.6.10 [b964fa9f] LaTeXStrings v1.4.0 [0e77f7df] LazilyInitializedFields v1.3.0 [16fef848] LiveServer v1.5.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 ⌅ [6c6e2e6c] MIMEs v0.1.4 [1914dd2f] MacroTools v0.5.16 [d0879d2d] MarkdownAST v0.1.2 [739be429] MbedTLS v1.1.9 [fa8bd995] MetaGraphsNext v0.7.5 [e1d29d7a] Missings v1.2.0 [6fe1bfb0] OffsetArrays v1.17.0 [4d8831e6] OpenSSL v1.6.1 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c84ed2f1] Ratios v0.4.5 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [321657f4] ScientificTypes v3.1.2 [30f210dd] ScientificTypesBase v3.0.0 [7e506255] ScopedValues v1.5.0 [91c51154] SentinelArrays v1.4.9 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.5 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [64bff920] StatisticalTraits v3.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [892a3eda] StringManipulation v0.4.2 [ec057cc2] StructUtils v2.6.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [efce3f68] WoodburyMatrices v1.1.0 [2e619515] Expat_jll v2.7.3+0 [f5851436] FFTW_jll v3.3.11+0 [020c3dae] Git_LFS_jll v3.7.0+0 [f8c6e375] Git_jll v2.52.0+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [856f044c] MKL_jll v2025.2.0+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [9bd350c2] OpenSSH_jll v10.2.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time BioFindr.jl | 145 145 1m10.6s Testing BioFindr tests passed Testing completed after 571.29s PkgEval succeeded after 1232.59s