Package evaluation to test OpenSMILES on Julia 1.14.0-DEV.1555 (0c48c4942b*) started at 2026-01-13T20:25:39.809 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 10.86s ################################################################################ # Installation # Installing OpenSMILES... Resolving package versions... Installed Compat ─────────────── v4.18.1 Installed SimpleTraits ───────── v0.9.5 Installed MacroTools ─────────── v0.5.16 Installed DataStructures ─────── v0.18.22 Installed SimpleWeightedGraphs ─ v1.5.1 Installed Statistics ─────────── v1.11.1 Installed Preferences ────────── v1.5.1 Installed PrecompileTools ────── v1.3.3 Installed StaticArraysCore ───── v1.4.4 Installed Inflate ────────────── v0.1.5 Installed ArnoldiMethod ──────── v0.1.0 Installed OrderedCollections ─── v1.8.1 Installed StaticArrays ───────── v1.9.16 Installed OpenSMILES ─────────── v0.1.0 Installed LightGraphs ────────── v1.3.5 Installed Graphs ─────────────── v1.9.0 Updating `~/.julia/environments/v1.14/Project.toml` [29c4880b] + OpenSMILES v0.1.0 Updating `~/.julia/environments/v1.14/Manifest.toml` ⌅ [ec485272] + ArnoldiMethod v0.1.0 [34da2185] + Compat v4.18.1 ⌅ [864edb3b] + DataStructures v0.18.22 ⌃ [86223c79] + Graphs v1.9.0 [d25df0c9] + Inflate v0.1.5 [093fc24a] + LightGraphs v1.3.5 [1914dd2f] + MacroTools v0.5.16 [29c4880b] + OpenSMILES v0.1.0 [bac558e1] + OrderedCollections v1.8.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [699a6c99] + SimpleTraits v0.9.5 [47aef6b3] + SimpleWeightedGraphs v1.5.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 2.15s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4710.2 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling packages... 4592.3 ms ✓ MacroTools 1066.6 ms ✓ StaticArraysCore 1059.2 ms ✓ Inflate 1348.8 ms ✓ OrderedCollections 1152.4 ms ✓ Statistics 1263.4 ms ✓ Preferences 1219.7 ms ✓ Compat 3564.6 ms ✓ SimpleTraits 1376.5 ms ✓ Statistics → SparseArraysExt 948.5 ms ✓ PrecompileTools 897.4 ms ✓ Compat → CompatLinearAlgebraExt 14464.0 ms ✓ StaticArrays 3906.2 ms ✓ DataStructures 1485.4 ms ✓ StaticArrays → StaticArraysStatisticsExt 3849.4 ms ✓ ArnoldiMethod 10096.6 ms ✓ Graphs 9495.4 ms ✓ LightGraphs 3721.9 ms ✓ SimpleWeightedGraphs 3660.1 ms ✓ OpenSMILES 19 dependencies successfully precompiled in 69 seconds. 18 already precompiled. Precompilation completed after 87.31s ################################################################################ # Testing # Testing OpenSMILES Status `/tmp/jl_99YCIt/Project.toml` [093fc24a] LightGraphs v1.3.5 [29c4880b] OpenSMILES v0.1.0 [47aef6b3] SimpleWeightedGraphs v1.5.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_99YCIt/Manifest.toml` ⌅ [ec485272] ArnoldiMethod v0.1.0 [34da2185] Compat v4.18.1 ⌅ [864edb3b] DataStructures v0.18.22 ⌃ [86223c79] Graphs v1.9.0 [d25df0c9] Inflate v0.1.5 [093fc24a] LightGraphs v1.3.5 [1914dd2f] MacroTools v0.5.16 [29c4880b] OpenSMILES v0.1.0 [bac558e1] OrderedCollections v1.8.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [699a6c99] SimpleTraits v0.9.5 [47aef6b3] SimpleWeightedGraphs v1.5.1 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Read Next Element | 6 6 0.9s Test Summary: | Pass Total Time Read Next Numeric | 3 3 0.6s Test Summary: | Pass Total Time Read Next Charge | 6 6 1.5s Test Summary: | Pass Total Time Brackets Known | 4 4 1.3s Test Summary: | Pass Total Time Brackets Equivalences | 4 4 0.0s ParseOpenSMILES Checking Implicit Hydrogens on Simple Molecules: Error During Test at /home/pkgeval/.julia/packages/OpenSMILES/LgYRr/test/runtests.jl:42 Got exception outside of a @test MethodError: no method matching add_vertex!(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64}) The definition in SimpleWeightedGraphs may have intended to extend (LightGraphs.SimpleGraphs).add_vertex! The function `add_vertex!` exists, but no method is defined for this combination of argument types. Closest candidates are: add_vertex!(!Matched::LightGraphs.SimpleGraphs.SimpleDiGraph{T}) where T @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/SimpleGraphs/simpledigraph.jl:449 add_vertex!(!Matched::LightGraphs.SimpleGraphs.SimpleGraph{T}) where T @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/SimpleGraphs/simplegraph.jl:526 Stacktrace: [1] ParseSMILES(S::String, calculate_implicit_hydrogens::Bool) @ OpenSMILES ~/.julia/packages/OpenSMILES/LgYRr/src/SMILESParser.jl:81 [2] ParseSMILES(S::String) @ OpenSMILES ~/.julia/packages/OpenSMILES/LgYRr/src/SMILESParser.jl:7 [3] top-level scope @ ~/.julia/packages/OpenSMILES/LgYRr/test/runtests.jl:43 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2156 [inlined] [5] macro expansion @ ~/.julia/packages/OpenSMILES/LgYRr/test/runtests.jl:43 [inlined] [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [7] top-level scope @ none:6 [8] eval(m::Module, e::Any) @ Core ./boot.jl:489 [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [10] _start() @ Base ./client.jl:585 Test Summary: | Error Total Time ParseOpenSMILES Checking Implicit Hydrogens on Simple Molecules | 1 1 4.7s RNG of the outermost testset: Random.Xoshiro(0x35f6882742b6cbb8, 0x904f311142c18466, 0xf289fe96c24b2cdc, 0x86e7a3937a948c06, 0x53eb8d5530830d60) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/OpenSMILES/LgYRr/test/runtests.jl:42 Testing failed after 81.05s ERROR: LoadError: Package OpenSMILES errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3122 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2987 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval failed after 197.14s: package tests unexpectedly errored