Package evaluation to test DiffusionMap on Julia 1.14.0-DEV.1523 (e57442f29c*) started at 2026-01-13T21:16:14.590 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 7.51s ################################################################################ # Installation # Installing DiffusionMap... Resolving package versions... Installed Missings ──────────── v1.2.0 Installed DataAPI ───────────── v1.16.0 Installed Compat ────────────── v4.18.1 Installed StatsAPI ──────────── v1.8.0 Installed Statistics ────────── v1.11.1 Installed LogExpFunctions ───── v0.3.29 Installed IrrationalConstants ─ v0.2.6 Installed SortingAlgorithms ─── v1.2.2 Installed DataStructures ────── v0.18.22 Installed OrderedCollections ── v1.8.1 Installed DocStringExtensions ─ v0.9.5 Installed StatsBase ─────────── v0.33.21 Installed DiffusionMap ──────── v0.1.4 Updating `~/.julia/environments/v1.14/Project.toml` [809424d5] + DiffusionMap v0.1.4 Updating `~/.julia/environments/v1.14/Manifest.toml` [34da2185] + Compat v4.18.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [809424d5] + DiffusionMap v0.1.4 [ffbed154] + DocStringExtensions v0.9.5 [92d709cd] + IrrationalConstants v0.2.6 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [a2af1166] + SortingAlgorithms v1.2.2 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 1.49s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 5014.2 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling packages... 3998.1 ms ✓ MacroTools 1665.1 ms ✓ InlineStrings 786.5 ms ✓ Reexport 994.8 ms ✓ MappedArrays 912.1 ms ✓ TensorCore 1380.5 ms ✓ ConstructionBase 1826.7 ms ✓ IrrationalConstants 823.2 ms ✓ DataValueInterfaces 1285.3 ms ✓ StatsAPI 2312.0 ms ✓ Format 1109.0 ms ✓ Observables 1140.7 ms ✓ RoundingEmulator 1009.8 ms ✓ PolygonOps 1411.5 ms ✓ IterTools 1244.8 ms ✓ IntervalSets 1290.9 ms ✓ CEnum 709.8 ms ✓ Indexing 1555.1 ms ✓ Combinatorics 738.2 ms ✓ Inflate 672.6 ms ✓ Contour 929.1 ms ✓ TranscodingStreams 641.4 ms ✓ LaTeXStrings 720.2 ms ✓ ChunkCodecCore 836.1 ms ✓ Statistics 698.3 ms ✓ Tricks 706.8 ms ✓ StaticArraysCore 685.3 ms ✓ StableRNGs 2021.0 ms ✓ AdaptivePredicates 678.3 ms ✓ GeoFormatTypes 610.4 ms ✓ PtrArrays 572.7 ms ✓ NaturalSort 893.0 ms ✓ Grisu 636.2 ms ✓ DataAPI 892.7 ms ✓ URIs 731.7 ms ✓ LazyModules 701.3 ms ✓ InverseFunctions 631.0 ms ✓ CompositionsBase 665.9 ms ✓ ShiftedArrays 843.5 ms ✓ AbstractTrees 797.5 ms ✓ AbstractFFTs 638.9 ms ✓ EnumX 736.1 ms ✓ WorkerUtilities 1531.8 ms ✓ FillArrays 2196.4 ms ✓ MIMEs 710.7 ms ✓ TriplotBase 648.1 ms ✓ IndirectArrays 745.5 ms ✓ Extents 630.4 ms ✓ RangeArrays 918.0 ms ✓ OrderedCollections 676.5 ms ✓ HashArrayMappedTries 811.0 ms ✓ DocStringExtensions 3548.8 ms ✓ BaseDirs 1158.1 ms ✓ OffsetArrays 653.1 ms ✓ IteratorInterfaceExtensions 633.1 ms ✓ IOCapture 752.6 ms ✓ NaNMath 939.9 ms ✓ Requires 1566.9 ms ✓ PDMats 1218.1 ms ✓ WoodburyMatrices 930.2 ms ✓ Scratch 30343.8 ms ✓ Unitful 1999.3 ms ✓ SentinelArrays 1683.0 ms ✓ StructUtils 2004.2 ms ✓ ProgressMeter 3415.7 ms ✓ UnicodeFun 1160.3 ms ✓ Compat 1232.7 ms ✓ Preferences 1191.2 ms ✓ Hyperscript 4243.8 ms ✓ AbstractPlutoDingetjes 4080.5 ms ✓ PkgVersion 3288.0 ms ✓ SimpleTraits 826.9 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 731.8 ms ✓ IntervalSets → IntervalSetsRandomExt 748.7 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 1874.4 ms ✓ Dictionaries 910.3 ms ✓ CodecZlib 931.5 ms ✓ ChunkCodecLibZlib 1084.8 ms ✓ ChunkCodecLibZstd 1347.7 ms ✓ SignedDistanceFields 1415.5 ms ✓ Statistics → SparseArraysExt 3313.3 ms ✓ FixedPointNumbers 1603.8 ms ✓ Distances 741.6 ms ✓ IntervalSets → IntervalSetsStatisticsExt 1264.1 ms ✓ HypertextLiteral 987.8 ms ✓ AliasTables 1618.4 ms ✓ Showoff 866.7 ms ✓ Missings 858.9 ms ✓ PooledArrays 730.7 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1422.0 ms ✓ InverseFunctions → InverseFunctionsTestExt 796.5 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 3290.6 ms ✓ AbstractFFTs → AbstractFFTsTestExt 1105.4 ms ✓ FillArrays → FillArraysSparseArraysExt 731.3 ms ✓ FillArrays → FillArraysStatisticsExt 1496.1 ms ✓ GeoInterface 736.8 ms ✓ ScopedValues 1021.1 ms ✓ LogExpFunctions 1141.9 ms ✓ PaddedViews 851.9 ms ✓ StackViews 596.2 ms ✓ TableTraits 885.6 ms ✓ Ratios 806.1 ms ✓ Adapt 6425.5 ms ✓ FileIO 1402.9 ms ✓ FillArrays → FillArraysPDMatsExt 1276.8 ms ✓ AxisAlgorithms 1128.8 ms ✓ RelocatableFolders 1510.5 ms ✓ Unitful → ConstructionBaseUnitfulExt 1526.7 ms ✓ Unitful → PrintfExt 1448.5 ms ✓ Unitful → InverseFunctionsUnitfulExt 1494.6 ms ✓ Unitful → NaNMathExt 870.9 ms ✓ Compat → CompatLinearAlgebraExt 855.1 ms ✓ PrecompileTools 871.5 ms ✓ JLLWrappers 1153.9 ms ✓ ComputePipeline 1080.3 ms ✓ AxisArrays 1845.1 ms ✓ ColorTypes 903.3 ms ✓ Distances → DistancesSparseArraysExt 3602.6 ms ✓ Accessors 762.1 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 818.8 ms ✓ MosaicViews 1247.3 ms ✓ Tables 647.0 ms ✓ Ratios → RatiosFixedPointNumbersExt 949.2 ms ✓ Adapt → AdaptSparseArraysExt 587.4 ms ✓ OffsetArrays → OffsetArraysAdaptExt 1967.9 ms ✓ ChainRulesCore 1428.9 ms ✓ FilePathsBase 2645.5 ms ✓ DataStructures 9630.6 ms ✓ SIMD 10617.2 ms ✓ StaticArrays 15633.0 ms ✓ Parsers 35630.3 ms ✓ JLD2 1076.9 ms ✓ Libffi_jll 1381.5 ms ✓ LZO_jll 1146.1 ms ✓ EarCut_jll 1018.8 ms ✓ Bzip2_jll 1833.1 ms ✓ OpenBLASConsistentFPCSR_jll 1076.1 ms ✓ isoband_jll 1429.8 ms ✓ XZ_jll 1410.8 ms ✓ Rmath_jll 1283.3 ms ✓ OpenSpecFun_jll 1546.6 ms ✓ Xorg_xtrans_jll 1740.9 ms ✓ Opus_jll 3073.9 ms ✓ IntelOpenMP_jll 1058.3 ms ✓ x265_jll 1050.4 ms ✓ libpng_jll 1052.5 ms ✓ CRlibm_jll 3114.0 ms ✓ oneTBB_jll 1020.2 ms ✓ Imath_jll 1024.8 ms ✓ Arpack_jll 1003.1 ms ✓ Libmount_jll 979.8 ms ✓ libfdk_aac_jll 987.7 ms ✓ Libuuid_jll 1015.6 ms ✓ FriBidi_jll 990.2 ms ✓ LERC_jll 995.4 ms ✓ Xorg_libXau_jll 994.4 ms ✓ Ogg_jll 1093.6 ms ✓ FFTW_jll 1013.1 ms ✓ LAME_jll 1009.6 ms ✓ Graphite2_jll 1133.7 ms ✓ x264_jll 1095.5 ms ✓ LLVMOpenMP_jll 1026.8 ms ✓ Libiconv_jll 1023.4 ms ✓ libaom_jll 995.7 ms ✓ Xorg_libXdmcp_jll 1042.5 ms ✓ Giflib_jll 1268.6 ms ✓ Expat_jll 1249.4 ms ✓ JpegTurbo_jll 1118.4 ms ✓ ColorTypes → StyledStringsExt 7341.5 ms ✓ Colors 3598.3 ms ✓ ColorVectorSpace 1511.0 ms ✓ Accessors → TestExt 2220.4 ms ✓ Accessors → IntervalSetsExt 2016.5 ms ✓ Accessors → LinearAlgebraExt 1696.2 ms ✓ Accessors → UnitfulExt 1309.2 ms ✓ StructArrays 787.1 ms ✓ StructUtils → StructUtilsTablesExt 1232.6 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 865.0 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 823.5 ms ✓ Distances → DistancesChainRulesCoreExt 3121.4 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 3257.4 ms ✓ FilePathsBase → FilePathsBaseTestExt 992.0 ms ✓ FilePathsBase → FilePathsBaseMmapExt 1113.7 ms ✓ FilePaths 1371.9 ms ✓ SortingAlgorithms 2514.1 ms ✓ QuadGK 16180.1 ms ✓ Automa 3656.0 ms ✓ ArnoldiMethod 1379.1 ms ✓ StaticArrays → StaticArraysStatisticsExt 1436.3 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1397.9 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1340.3 ms ✓ Adapt → AdaptStaticArraysExt 1499.0 ms ✓ Accessors → StaticArraysExt 6666.9 ms ✓ JSON 923.8 ms ✓ InlineStrings → ParsersExt 21028.0 ms ✓ GeometryBasics 1739.4 ms ✓ FreeType2_jll 954.5 ms ✓ Isoband 1596.4 ms ✓ Rmath 5510.3 ms ✓ SpecialFunctions 1537.9 ms ✓ CRlibm  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB 12685.6 ms ✓ MKL_jll 1566.9 ms ✓ OpenEXR_jll 1417.0 ms ✓ Arpack 1474.5 ms ✓ libvorbis_jll 1338.0 ms ✓ Pixman_jll 1593.1 ms ✓ GettextRuntime_jll 1416.8 ms ✓ Xorg_libxcb_jll 1533.3 ms ✓ Libtiff_jll 2054.1 ms ✓ libsixel_jll 4966.9 ms ✓ QOI 8897.5 ms ✓ PlutoUI 43787.3 ms ✓ TiffImages 1287.5 ms ✓ Animations 1269.9 ms ✓ Graphics 28445.7 ms ✓ ImageCore 8442.3 ms ✓ ColorSchemes 1250.7 ms ✓ StructArrays → StructArraysSparseArraysExt 801.0 ms ✓ StructArrays → StructArraysLinearAlgebraExt 809.9 ms ✓ StructArrays → StructArraysAdaptExt 1566.1 ms ✓ StructArrays → StructArraysStaticArraysExt 983.5 ms ✓ Accessors → StructArraysExt 934.2 ms ✓ FilePaths → FilePathsURIsExt 4707.0 ms ✓ StatsBase 9173.7 ms ✓ Graphs 4240.1 ms ✓ Interpolations 4204.2 ms ✓ ColorBrewer 2339.6 ms ✓ WeakRefStrings 2959.6 ms ✓ GeometryBasics → GeometryBasicsGeoInterfaceExt 3002.9 ms ✓ Packing 11543.7 ms ✓ GridLayoutBase 3792.5 ms ✓ ShaderAbstractions 1699.8 ms ✓ FreeType 1473.1 ms ✓ Fontconfig_jll 3920.9 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2134.8 ms ✓ HypergeometricFunctions 1337.3 ms ✓ ColorVectorSpace → SpecialFunctionsExt 5134.8 ms ✓ IntervalArithmetic 6677.4 ms ✓ FFTW 5686.0 ms ✓ OpenEXR 1465.7 ms ✓ Glib_jll 1366.3 ms ✓ Xorg_libX11_jll 4167.6 ms ✓ ImageBase 7950.9 ms ✓ PNGFiles 9430.2 ms ✓ Sixel 6210.0 ms ✓ JpegTurbo 11937.4 ms ✓ PlotUtils 1835.1 ms ✓ DiffusionMap 3289.9 ms ✓ MultivariateStats 3588.3 ms ✓ Interpolations → InterpolationsUnitfulExt 25515.6 ms ✓ CSV 5865.5 ms ✓ FreeTypeAbstraction 3312.8 ms ✓ StatsFuns 1901.7 ms ✓ IntervalArithmetic → IntervalArithmeticSparseArraysExt 1430.9 ms ✓ IntervalArithmetic → IntervalArithmeticLinearAlgebraExt 1017.4 ms ✓ IntervalArithmetic → IntervalArithmeticIntervalSetsExt 1381.3 ms ✓ Xorg_libXrender_jll 1390.0 ms ✓ Xorg_libXext_jll 5813.2 ms ✓ ImageAxes 4021.6 ms ✓ ManifoldLearning 26251.1 ms ✓ MathTeXEngine 4187.8 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 1163.6 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 1760.8 ms ✓ Loess 5023.4 ms ✓ StatsModels 11182.9 ms ✓ Distributions 7410.9 ms ✓ ExactPredicates 1468.3 ms ✓ Cairo_jll 1497.3 ms ✓ Libglvnd_jll 4180.3 ms ✓ ImageMetadata 6476.5 ms ✓ GLM 4127.6 ms ✓ Distributions → DistributionsTestExt 3806.2 ms ✓ Distributions → DistributionsChainRulesCoreExt 11259.0 ms ✓ DelaunayTriangulation 1524.2 ms ✓ HarfBuzz_jll 1557.4 ms ✓ libwebp_jll 8380.8 ms ✓ Netpbm 4698.6 ms ✓ KernelDensity 1556.2 ms ✓ libass_jll 1652.9 ms ✓ Pango_jll 9048.3 ms ✓ WebP 1757.0 ms ✓ FFMPEG_jll 2633.3 ms ✓ Cairo 4969.3 ms ✓ ImageIO 365795.6 ms ✓ Makie 68591.8 ms ✓ GeoInterface → GeoInterfaceMakieExt 216651.2 ms ✓ AlgebraOfGraphics 302383.0 ms ✓ CairoMakie 82903.1 ms ✓ AlgebraOfGraphics → AlgebraOfGraphicsUnitfulExt 288 dependencies successfully precompiled in 1884 seconds. 42 already precompiled. 1 dependency had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ Precompilation completed after 1894.58s ################################################################################ # Testing # Testing DiffusionMap Status `/tmp/jl_l5j5HX/Project.toml` [cbdf2221] AlgebraOfGraphics v0.12.1 [336ed68f] CSV v0.10.15 [13f3f980] CairoMakie v0.15.8 [35d6a980] ColorSchemes v3.31.0 [809424d5] DiffusionMap v0.1.4 [b5f81e59] IOCapture v1.0.0 [033835bb] JLD2 v0.6.3 [06eb3307] ManifoldLearning v0.9.0 [7f904dfe] PlutoUI v0.7.78 [10745b16] Statistics v1.11.1 ⌅ [2913bbd2] StatsBase v0.33.21 [b77e0a4c] InteractiveUtils v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [d6f4376e] Markdown v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_l5j5HX/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [6e696c72] AbstractPlutoDingetjes v1.3.2 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.4.0 [35492f91] AdaptivePredicates v1.2.0 [cbdf2221] AlgebraOfGraphics v0.12.1 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [ec485272] ArnoldiMethod v0.4.0 [7d9fca2a] Arpack v0.5.4 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [18cc8868] BaseDirs v1.3.2 [fa961155] CEnum v0.5.0 [96374032] CRlibm v1.0.2 [336ed68f] CSV v0.10.15 [159f3aea] Cairo v1.1.1 [13f3f980] CairoMakie v0.15.8 [d360d2e6] ChainRulesCore v1.26.0 [0b6fb165] ChunkCodecCore v1.0.1 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.2 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.1.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [95dc2771] ComputePipeline v0.1.6 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [927a84f5] DelaunayTriangulation v1.6.6 [85a47980] Dictionaries v0.4.6 [809424d5] DiffusionMap v0.1.4 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [429591f6] ExactPredicates v2.2.9 [411431e0] Extents v0.1.6 [7a1cc6ca] FFTW v1.10.0 [5789e2e9] FileIO v1.17.1 [8fc22ac5] FilePaths v0.9.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.8 [38e38edf] GLM v1.9.2 [68eda718] GeoFormatTypes v0.4.5 [cf35fbd7] GeoInterface v1.6.0 [5c1252a2] GeometryBasics v0.5.10 [a2bd30eb] Graphics v1.1.3 ⌃ [86223c79] Graphs v1.13.1 [3955a311] GridLayoutBase v0.11.2 [42e2da0e] Grisu v1.0.2 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [47d2ed2b] Hyperscript v0.0.5 [ac1192a8] HypertextLiteral v0.9.5 [b5f81e59] IOCapture v1.0.0 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [313cdc1a] Indexing v1.1.1 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.5 [a98d9a8b] Interpolations v0.16.2 [d1acc4aa] IntervalArithmetic v1.0.2 [8197267c] IntervalSets v0.7.13 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.6.3 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.3.0 [b835a17e] JpegTurbo v0.1.6 [5ab0869b] KernelDensity v0.6.10 [b964fa9f] LaTeXStrings v1.4.0 [8cdb02fc] LazyModules v0.3.1 [4345ca2d] Loess v0.6.5 [2ab3a3ac] LogExpFunctions v0.3.29 [6c6e2e6c] MIMEs v1.1.0 [1914dd2f] MacroTools v0.5.16 [ee78f7c6] Makie v0.24.8 [06eb3307] ManifoldLearning v0.9.0 [dbb5928d] MappedArrays v0.4.3 [0a4f8689] MathTeXEngine v0.6.7 [e1d29d7a] Missings v1.2.0 [e94cdb99] MosaicViews v0.3.4 ⌅ [6f286f6a] MultivariateStats v0.9.0 [77ba4419] NaNMath v1.1.3 [c020b1a1] NaturalSort v1.0.0 [f09324ee] Netpbm v1.1.1 [510215fc] Observables v0.5.5 [6fe1bfb0] OffsetArrays v1.17.0 [52e1d378] OpenEXR v0.3.3 [bac558e1] OrderedCollections v1.8.1 ⌃ [90014a1f] PDMats v0.11.35 [f57f5aa1] PNGFiles v0.4.4 [19eb6ba3] Packing v0.5.1 [5432bcbf] PaddedViews v0.5.12 [69de0a69] Parsers v2.8.3 [eebad327] PkgVersion v0.3.3 [995b91a9] PlotUtils v1.4.4 [7f904dfe] PlutoUI v0.7.78 [647866c9] PolygonOps v0.1.2 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [4b34888f] QOI v1.0.2 [1fd47b50] QuadGK v2.11.2 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [5eaf0fd0] RoundingEmulator v0.2.1 [fdea26ae] SIMD v3.7.2 [7e506255] ScopedValues v1.5.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.9 [65257c39] ShaderAbstractions v0.5.0 [1277b4bf] ShiftedArrays v2.0.0 [992d4aef] Showoff v1.0.3 [73760f76] SignedDistanceFields v0.4.1 [699a6c99] SimpleTraits v0.9.5 [45858cf5] Sixel v0.1.5 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions 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SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ________ __ _____ _____ __ _____ \______ \ |__|_/ ____\_/ ____\__ __ ______|__| ____ ____ / \ _____ ______ | | \ | |\ __\ \ __\| | \/ ___/| | / _ \ / \ / \ / \ \__ \ \____ \ | ` \| | | | | | | | /\___ \ | |( <_> )| | \/ Y \ / __ \_| |_> > /_______ /|__| |__| |__| |____//____ >|__| \____/ |___| /\____|__ /(____ /| __/ \/ \/ \/ \/ \/ |__| Test Summary: | Pass Total Time normalize_to_stochastic_matrix! | 2 2 4.2s Test Summary: | Pass Total Time diffusion_map | 5 5 9.8s matrix P | 4 4 7.3s matrix X and kernel | 1 1 2.5s Test Summary: | Pass Total Time pca | 1 1 0.8s [ Info: Running example notebook (may take a minute or so) ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_71643.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2285 [inlined] start_task at /source/src/task.c:1272 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000071796c7c50f0 Total snapshots: 342. Utilization: 0% ╎342 @Base/task.jl:1168 wait_forever() 341╎ 342 @Base/task.jl:1246 wait() PkgEval terminated after 2733.82s: test duration exceeded the time limit