Package evaluation to test BigRiverQTL on Julia 1.14.0-DEV.1555 (0c48c4942b*) started at 2026-01-14T02:54:23.896 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 9.86s ################################################################################ # Installation # Installing BigRiverQTL... Resolving package versions... Installed Rmath_jll ─────────────────── v0.5.1+0 Installed FilePathsBase ─────────────── v0.9.24 Installed MacroTools ────────────────── v0.5.16 Installed Adapt ─────────────────────── v4.4.0 Installed InlineStrings ─────────────── v1.4.5 Installed DataStructures ────────────── v0.19.3 Installed FillArrays ────────────────── v1.15.0 Installed DelimitedFiles ────────────── v1.9.1 Installed HypergeometricFunctions ───── v0.3.28 Installed ConstructionBase ──────────── v1.6.0 Installed AliasTables ───────────────── v1.1.3 Installed StatsBase ─────────────────── v0.34.10 Installed CodecZlib ─────────────────── v0.7.8 Installed Compat ────────────────────── v4.18.1 Installed OrderedCollections ────────── v1.8.1 Installed ArrayInterface ────────────── v7.22.0 Installed TranscodingStreams ────────── v0.11.3 Installed Optim ─────────────────────── v2.0.0 Installed RecipesBase ───────────────── v1.3.4 Installed InvertedIndices ───────────── v1.3.1 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed DataAPI ───────────────────── v1.16.0 Installed Statistics ────────────────── v1.11.1 Installed PositiveFactorizations ────── v0.2.4 Installed DataValueInterfaces ───────── v1.0.0 Installed StatsAPI ──────────────────── v1.8.0 Installed SentinelArrays ────────────── v1.4.9 Installed StaticArraysCore ──────────── v1.4.4 Installed StructUtils ───────────────── v2.6.1 Installed PrecompileTools ───────────── v1.3.3 Installed IrrationalConstants ───────── v0.2.6 Installed BigRiverQTL ───────────────── v0.1.2 Installed StringManipulation ────────── v0.4.2 Installed QuadGK ────────────────────── v2.11.2 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed NaNMath ───────────────────── v1.1.3 Installed Requires ──────────────────── v1.3.1 Installed Parsers ───────────────────── v2.8.3 Installed LogExpFunctions ───────────── v0.3.29 Installed Rmath ─────────────────────── v0.9.0 Installed FiniteDiff ────────────────── v2.29.0 Installed JSON ──────────────────────── v1.3.0 Installed PrettyTables ──────────────── v3.1.2 Installed Distributions ─────────────── v0.25.123 Installed PtrArrays ─────────────────── v1.3.0 Installed StatsFuns ─────────────────── v1.5.2 Installed Tables ────────────────────── v1.12.1 Installed EnumX ─────────────────────── v1.0.5 Installed NLSolversBase ─────────────── v8.0.0 Installed CSV ───────────────────────── v0.10.15 Installed DataFrames ────────────────── v1.8.1 Installed Reexport ──────────────────── v1.2.2 Installed Setfield ──────────────────── v1.1.2 Installed SpecialFunctions ──────────── v2.6.1 Installed Missings ──────────────────── v1.2.0 Installed Preferences ───────────────── v1.5.1 Installed WeakRefStrings ────────────── v1.4.2 Installed PooledArrays ──────────────── v1.4.3 Installed JLLWrappers ───────────────── v1.7.1 Installed TableTraits ───────────────── v1.0.1 Installed LineSearches ──────────────── v7.6.0 Installed LaTeXStrings ──────────────── v1.4.0 Installed Crayons ───────────────────── v4.1.1 Installed SortingAlgorithms ─────────── v1.2.2 Installed PDMats ────────────────────── v0.11.37 Installed WorkerUtilities ───────────── v1.6.1 Installed ADTypes ───────────────────── v1.21.0 Installed DocStringExtensions ───────── v0.9.5 Installed DifferentiationInterface ──── v0.7.13 Installed BigRiverQTLPlots ──────────── v0.2.2 Installed BulkLMM ───────────────────── v1.2.1 Installing 2 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Rmath 121.9 KiB Updating `~/.julia/environments/v1.14/Project.toml` [8f8ec94a] + BigRiverQTL v0.1.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [8f8ec94a] + BigRiverQTL v0.1.2 [042156b7] + BigRiverQTLPlots v0.2.2 [b8d15608] + BulkLMM v1.2.1 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [a0c0ee7d] + DifferentiationInterface v0.7.13 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.15.0 [6a86dc24] + FiniteDiff v2.29.0 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.3.0 [b964fa9f] + LaTeXStrings v1.4.0 [d3d80556] + LineSearches v7.6.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v8.0.0 [77ba4419] + NaNMath v1.1.3 [429524aa] + Optim v2.0.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [91c51154] + SentinelArrays v1.4.9 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [892a3eda] + StringManipulation v0.4.2 [ec057cc2] + StructUtils v2.6.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 12.22s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 6020.5 ms ✓ TestEnv 1 dependency successfully precompiled in 6 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling packages... 4407.6 ms ✓ MacroTools 1695.5 ms ✓ InlineStrings 829.0 ms ✓ Reexport 906.3 ms ✓ TensorCore 1160.4 ms ✓ ConstructionBase 2045.2 ms ✓ IrrationalConstants 981.1 ms ✓ Measures 870.4 ms ✓ DataValueInterfaces 925.9 ms ✓ StatsAPI 2328.9 ms ✓ Format 961.6 ms ✓ Contour 1327.2 ms ✓ TranscodingStreams 897.6 ms ✓ LaTeXStrings 1144.9 ms ✓ Statistics 946.0 ms ✓ StaticArraysCore 992.0 ms ✓ StableRNGs 847.1 ms ✓ PtrArrays 905.4 ms ✓ SimpleBufferStream 1258.9 ms ✓ Grisu 1015.5 ms ✓ PositiveFactorizations 890.5 ms ✓ DataAPI 1222.3 ms ✓ URIs 901.3 ms ✓ InvertedIndices 920.5 ms ✓ BitFlags 890.2 ms ✓ EnumX 1005.9 ms ✓ WorkerUtilities 2218.6 ms ✓ FillArrays 1362.1 ms ✓ OrderedCollections 1393.1 ms ✓ ADTypes 1114.0 ms ✓ DocStringExtensions 1094.7 ms ✓ Unzip 799.0 ms ✓ IteratorInterfaceExtensions 1892.6 ms ✓ Crayons 1130.9 ms ✓ DelimitedFiles 1093.5 ms ✓ NaNMath 1208.0 ms ✓ Requires 1794.8 ms ✓ ConcurrentUtilities 1914.6 ms ✓ PDMats 959.3 ms ✓ Scratch 2200.2 ms ✓ SentinelArrays 1102.5 ms ✓ LoggingExtras 1470.3 ms ✓ StructUtils 4248.1 ms ✓ UnicodeFun 1442.0 ms ✓ Compat 1737.5 ms ✓ Preferences 2058.7 ms ✓ ExceptionUnwrapping 813.6 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 962.0 ms ✓ CodecZlib 1374.5 ms ✓ Statistics → SparseArraysExt 3905.6 ms ✓ FixedPointNumbers 995.0 ms ✓ AliasTables 920.4 ms ✓ Showoff 1000.6 ms ✓ Missings 1050.2 ms ✓ PooledArrays 3978.4 ms ✓ OpenSSL 1565.9 ms ✓ FillArrays → FillArraysSparseArraysExt 987.9 ms ✓ FillArrays → FillArraysStatisticsExt 3542.4 ms ✓ DataStructures 864.0 ms ✓ ADTypes → ADTypesConstructionBaseExt 2168.5 ms ✓ DifferentiationInterface 1418.9 ms ✓ LogExpFunctions 965.7 ms ✓ TableTraits 1182.6 ms ✓ Adapt 1582.7 ms ✓ FillArrays → FillArraysPDMatsExt 1095.0 ms ✓ RelocatableFolders 872.1 ms ✓ Compat → CompatLinearAlgebraExt 1011.4 ms ✓ PrecompileTools 1267.7 ms ✓ JLLWrappers 2981.0 ms ✓ Setfield 3103.2 ms ✓ ColorTypes 1189.6 ms ✓ SortingAlgorithms 2364.7 ms ✓ QuadGK 1803.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 2028.2 ms ✓ Tables 1259.8 ms ✓ ArrayInterface 1476.2 ms ✓ Adapt → AdaptSparseArraysExt 2180.3 ms ✓ FilePathsBase 3204.6 ms ✓ StringManipulation 2912.8 ms ✓ RecipesBase 16306.9 ms ✓ Parsers 1422.7 ms ✓ Libffi_jll 1436.5 ms ✓ Xorg_libICE_jll 1425.1 ms ✓ LZO_jll 1432.5 ms ✓ eudev_jll 1431.9 ms ✓ mtdev_jll 1440.6 ms ✓ Bzip2_jll 1439.8 ms ✓ XZ_jll 1407.3 ms ✓ Rmath_jll 1392.1 ms ✓ OpenSpecFun_jll 1263.6 ms ✓ Xorg_xtrans_jll 1399.2 ms ✓ Opus_jll 1392.5 ms ✓ x265_jll 1444.5 ms ✓ fzf_jll 1462.1 ms ✓ libpng_jll 1173.7 ms ✓ EpollShim_jll 1398.7 ms ✓ Libmount_jll 1412.3 ms ✓ libfdk_aac_jll 1448.6 ms ✓ Libuuid_jll 1417.9 ms ✓ FriBidi_jll 1390.5 ms ✓ LERC_jll 1385.8 ms ✓ Xorg_libXau_jll 1367.5 ms ✓ Ogg_jll 1541.2 ms ✓ libevdev_jll 1466.8 ms ✓ LAME_jll 1405.7 ms ✓ Graphite2_jll 1427.1 ms ✓ x264_jll 1398.8 ms ✓ LLVMOpenMP_jll 1417.8 ms ✓ Libiconv_jll 1364.5 ms ✓ MbedTLS_jll 2293.7 ms ✓ libaom_jll 1682.3 ms ✓ Xorg_libXdmcp_jll 1729.9 ms ✓ Expat_jll 1743.7 ms ✓ JpegTurbo_jll 1474.1 ms ✓ ColorTypes → StyledStringsExt 8264.0 ms ✓ Colors 4055.9 ms ✓ ColorVectorSpace 4806.2 ms ✓ StatsBase 944.7 ms ✓ StructUtils → StructUtilsTablesExt 798.0 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1286.4 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 2851.4 ms ✓ FilePathsBase → FilePathsBaseTestExt 988.5 ms ✓ FilePathsBase → FilePathsBaseMmapExt 39121.7 ms ✓ PrettyTables 7134.9 ms ✓ JSON 1044.4 ms ✓ InlineStrings → ParsersExt 1836.2 ms ✓ Xorg_libSM_jll 1652.7 ms ✓ FreeType2_jll 1521.7 ms ✓ Rmath 5011.3 ms ✓ SpecialFunctions 2389.9 ms ✓ JLFzf 1419.0 ms ✓ libvorbis_jll 1523.1 ms ✓ libinput_jll 1464.9 ms ✓ Pixman_jll 1567.9 ms ✓ GettextRuntime_jll 2057.1 ms ✓ MbedTLS 1545.2 ms ✓ Xorg_libxcb_jll 1552.3 ms ✓ Dbus_jll 1598.2 ms ✓ Wayland_jll 1673.8 ms ✓ Ghostscript_jll 1777.0 ms ✓ Libtiff_jll 9111.8 ms ✓ ColorSchemes 1471.5 ms ✓ PDMats → StatsBaseExt 1357.1 ms ✓ FiniteDiff 83205.7 ms ✓ DataFrames 2417.7 ms ✓ WeakRefStrings 1502.7 ms ✓ Fontconfig_jll 2047.5 ms ✓ HypergeometricFunctions 1422.3 ms ✓ ColorVectorSpace → SpecialFunctionsExt 1502.9 ms ✓ Glib_jll 24916.6 ms ✓ HTTP 1341.6 ms ✓ Xorg_xcb_util_jll 1405.7 ms ✓ Xorg_libX11_jll 5968.2 ms ✓ Latexify 16671.4 ms ✓ PlotUtils 1497.5 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1065.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 7485.3 ms ✓ BigRiverQTLPlots 24753.4 ms ✓ CSV 2824.2 ms ✓ StatsFuns 1428.9 ms ✓ Xorg_xcb_util_renderutil_jll 1384.7 ms ✓ Xorg_xcb_util_wm_jll 1385.7 ms ✓ Xorg_xcb_util_image_jll 1525.1 ms ✓ Xorg_xcb_util_keysyms_jll 1478.6 ms ✓ Xorg_libXfixes_jll 1324.7 ms ✓ Xorg_libXrender_jll 1378.2 ms ✓ Xorg_libXext_jll 1354.2 ms ✓ Xorg_libxkbfile_jll 2314.0 ms ✓ Latexify → SparseArraysExt 7183.1 ms ✓ Latexify → DataFramesExt 9518.6 ms ✓ PlotThemes 8401.5 ms ✓ RecipesPipeline 1446.8 ms ✓ NLSolversBase 10758.5 ms ✓ Distributions 1662.1 ms ✓ Xorg_xcb_util_cursor_jll 1641.0 ms ✓ Xorg_libXcursor_jll 1405.1 ms ✓ Xorg_libXrandr_jll 1601.9 ms ✓ Xorg_libXinerama_jll 1809.1 ms ✓ Xorg_libXi_jll 1981.0 ms ✓ Cairo_jll 1666.2 ms ✓ Libglvnd_jll 1947.4 ms ✓ Xorg_xkbcomp_jll 1946.8 ms ✓ LineSearches 3451.6 ms ✓ Distributions → DistributionsTestExt 2341.8 ms ✓ HarfBuzz_jll 1716.3 ms ✓ Xorg_xkeyboard_config_jll 7151.5 ms ✓ Optim 2342.6 ms ✓ libass_jll 1649.2 ms ✓ Pango_jll 1587.8 ms ✓ xkbcommon_jll 10189.5 ms ✓ BulkLMM 3543.4 ms ✓ FFMPEG_jll 2421.6 ms ✓ Vulkan_Loader_jll 1993.7 ms ✓ libdecor_jll 10722.1 ms ✓ BigRiverQTL 1120.1 ms ✓ FFMPEG 1940.1 ms ✓ Qt6Base_jll 2596.6 ms ✓ GLFW_jll 2068.3 ms ✓ Qt6ShaderTools_jll 2724.4 ms ✓ GR_jll 2157.1 ms ✓ Qt6Declarative_jll 3720.5 ms ✓ Qt6Wayland_jll 6930.8 ms ✓ GR 100808.1 ms ✓ Plots 203 dependencies successfully precompiled in 720 seconds. 38 already precompiled. Precompilation completed after 732.91s ################################################################################ # Testing # Testing BigRiverQTL Status `/tmp/jl_p09ECX/Project.toml` [8f8ec94a] BigRiverQTL v0.1.2 [042156b7] BigRiverQTLPlots v0.2.2 [b8d15608] BulkLMM v1.2.1 [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.8.1 [8bb1440f] DelimitedFiles v1.9.1 [682c06a0] JSON v1.3.0 [e1d29d7a] Missings v1.2.0 [91a5bcdd] Plots v1.41.4 [189a3867] Reexport v1.2.2 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.10 [37e2e46d] LinearAlgebra v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_p09ECX/Manifest.toml` [47edcb42] ADTypes v1.21.0 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.22.0 [8f8ec94a] BigRiverQTL v0.1.2 [042156b7] BigRiverQTLPlots v0.2.2 [d1d4a3ce] BitFlags v0.1.9 [b8d15608] BulkLMM v1.2.1 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [a0c0ee7d] DifferentiationInterface v0.7.13 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [460bff9d] ExceptionUnwrapping v0.1.11 [c87230d0] FFMPEG v0.4.5 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [6a86dc24] FiniteDiff v2.29.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [28b8d3ca] GR v0.73.19 [42e2da0e] Grisu v1.0.2 [cd3eb016] HTTP v1.10.19 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [1019f520] JLFzf v0.1.11 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.3.0 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.10 [d3d80556] LineSearches v7.6.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [739be429] MbedTLS v1.1.9 [442fdcdd] Measures v0.3.3 [e1d29d7a] Missings v1.2.0 [d41bc354] NLSolversBase v8.0.0 [77ba4419] NaNMath v1.1.3 [4d8831e6] OpenSSL v1.6.1 [429524aa] Optim v2.0.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [69de0a69] Parsers v2.8.3 [ccf2f8ad] PlotThemes v3.3.0 [995b91a9] PlotUtils v1.4.4 [91a5bcdd] Plots v1.41.4 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [3cdcf5f2] RecipesBase v1.3.4 [01d81517] RecipesPipeline v0.6.12 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.9 [efcf1570] Setfield v1.1.2 [992d4aef] Showoff v1.0.3 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [860ef19b] StableRNGs v1.0.4 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [892a3eda] StringManipulation v0.4.2 [ec057cc2] StructUtils v2.6.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [1cfade01] UnicodeFun v0.4.1 [41fe7b60] Unzip v0.2.0 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [6e34b625] Bzip2_jll v1.0.9+0 [83423d85] Cairo_jll v1.18.5+0 [ee1fde0b] Dbus_jll v1.16.2+0 [2702e6a9] EpollShim_jll v0.0.20230411+1 [2e619515] Expat_jll v2.7.3+0 [b22a6f82] FFMPEG_jll v8.0.1+0 [a3f928ae] Fontconfig_jll v2.17.1+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [0656b61e] GLFW_jll v3.4.1+0 [d2c73de3] GR_jll v0.73.19+1 [b0724c58] GettextRuntime_jll v0.22.4+0 [61579ee1] Ghostscript_jll v9.55.1+0 [7746bdde] Glib_jll v2.86.2+0 [3b182d85] Graphite2_jll v1.3.15+0 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [aacddb02] JpegTurbo_jll v3.1.4+0 [c1c5ebd0] LAME_jll v3.100.3+0 [88015f11] LERC_jll v4.0.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 ⌅ [e9f186c6] Libffi_jll v3.4.7+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.2+0 [89763e89] Libtiff_jll v4.7.2+0 [38a345b3] Libuuid_jll v2.41.2+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [e7412a2a] Ogg_jll v1.3.6+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [91d4177d] Opus_jll v1.6.0+0 [36c8627f] Pango_jll v1.57.0+0 ⌅ [30392449] Pixman_jll v0.44.2+0 [c0090381] Qt6Base_jll v6.8.2+2 [629bc702] Qt6Declarative_jll v6.8.2+1 [ce943373] Qt6ShaderTools_jll v6.8.2+1 [e99dba38] Qt6Wayland_jll v6.8.2+2 [f50d1b31] Rmath_jll 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[de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test kinship dimensions: Test Passed Test diagonal: Test Passed Test diagonal: Test Passed Test kinship dimensions: Test Passed Test diagonal: Test Passed Test diagonal: Test Passed Test kinship dimensions: Test Passed Test diagonal: Test Passed Test diagonal: Test Passed Test kinship dimensions: Test Passed Test diagonal: Test Passed Test diagonal: Test Passed Test kinship dimensions: Test Passed Test diagonal: Test Passed Test diagonal: Test Passed Test kinship dimensions: Test Passed Test diagonal: Test Passed Test diagonal: Test Passed ┌ Warning: No unit detected! └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:59 ┌ Warning: No unit detected! └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:59 ┌ Warning: Presence of genotypes not encoded by dictionnary of the control file: H │ Not specified genetotype will be encoded as missing └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/io_helpers.jl:131 ┌ Warning: No unit detected! └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:59 ┌ Warning: No sex information; assuming all female └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:598 ┌ Warning: No unit detected! └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:59 ┌ Warning: No unit detected! └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:59 ┌ Warning: Presence of genotypes not encoded by dictionnary of the control file: H │ Not specified genetotype will be encoded as missing └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/io_helpers.jl:131 ┌ Warning: No unit detected! └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:59 ┌ Warning: No sex information; assuming all female └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:598 ┌ Warning: covar file not found in control file └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/io_helpers.jl:180 ┌ Warning: No unit detected! └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:59 ┌ Warning: No unit detected! └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:59 ┌ Warning: Presence of genotypes not encoded by dictionnary of the control file: H │ Not specified genetotype will be encoded as missing └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/io_helpers.jl:131 ┌ Warning: No unit detected! └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:59 ┌ Warning: No sex information; assuming all female └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:598 ┌ Warning: covar file not found in control file └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/io_helpers.jl:180 ┌ Warning: Presence of genotypes not encoded by dictionnary of the control file: BC & BD │ Not specified genetotype will be encoded as missing └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/io_helpers.jl:131 ┌ Warning: Presence of genotypes not encoded by dictionnary of the control file: AC & AE & AD & AF │ Not specified genetotype will be encoded as missing └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/io_helpers.jl:131 ┌ Warning: No unit detected! └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:59 ┌ Warning: No unit detected! └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:59 ┌ Warning: Presence of genotypes not encoded by dictionnary of the control file: H │ Not specified genetotype will be encoded as missing └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/io_helpers.jl:131 ┌ Warning: No unit detected! └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:59 ┌ Warning: No sex information; assuming all female └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:598 ┌ Warning: covar file not found in control file └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/io_helpers.jl:180 Test Summary: | Pass Total Time BigRiverQTL | 72 72 4m54.6s Testing BigRiverQTL tests passed Testing completed after 928.05s PkgEval succeeded after 1758.69s