Package evaluation to test Spglib on Julia 1.14.0-DEV.1491 (0e7d18362a*) started at 2026-01-12T01:21:24.890 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 7.86s ################################################################################ # Installation # Installing Spglib... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [f761d5c5] + Spglib v1.0.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [34da2185] + Compat v4.18.1 ⌅ [80545937] + CrystallographyCore v0.3.3 [692b3bcd] + JLLWrappers v1.7.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [f761d5c5] + Spglib v1.0.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [6ec83bb0] + StructEquality v2.1.0 [ac4a9f1e] + spglib_jll v2.7.0+0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 3.81s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 Precompilation failed after 9.33s ################################################################################ # Testing # Testing Spglib Status `/tmp/jl_c3wU2A/Project.toml` ⌅ [80545937] CrystallographyCore v0.3.3 [f761d5c5] Spglib v1.0.1 [1e83bf80] StaticArraysCore v1.4.4 [6ec83bb0] StructEquality v2.1.0 [ac4a9f1e] spglib_jll v2.7.0+0 [8dfed614] Test v1.11.0 Status `/tmp/jl_c3wU2A/Manifest.toml` [34da2185] Compat v4.18.1 ⌅ [80545937] CrystallographyCore v0.3.3 [692b3bcd] JLLWrappers v1.7.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [f761d5c5] Spglib v1.0.1 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [6ec83bb0] StructEquality v2.1.0 [ac4a9f1e] spglib_jll v2.7.0+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Spglib.jl: Test Failed at /home/pkgeval/.julia/packages/Spglib/daKTm/test/misc.jl:1 Expression: get_version() == v"2.5.0" Evaluated: v"2.7.0" == v"2.5.0" Stacktrace: [1] top-level scope @ ~/.julia/packages/Spglib/daKTm/test/misc.jl:548 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [4] top-level scope @ ~/.julia/packages/Spglib/daKTm/test/runtests.jl:6 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [6] macro expansion @ ~/.julia/packages/Spglib/daKTm/test/runtests.jl:6 [inlined] Test type I: Test Failed at /home/pkgeval/.julia/packages/Spglib/daKTm/test/magnetic.jl:311 Expression: dataset.transformation_matrix == [1 0 0; 0 1 0; 0 0 1] Evaluated: [0.9999999999999998 0.0 0.0; 0.0 0.9999999999999998 0.0; 0.0 0.0 1.0000000000000002] == [1 0 0; 0 1 0; 0 0 1] Stacktrace: [1] top-level scope @ ~/.julia/packages/Spglib/daKTm/test/magnetic.jl:255 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/Spglib/daKTm/test/magnetic.jl:311 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] Test type III: Test Failed at /home/pkgeval/.julia/packages/Spglib/daKTm/test/magnetic.jl:414 Expression: dataset.transformation_matrix == [1 0 0; 0 1 0; 0 0 1] Evaluated: [1.0 -6.162975822039155e-33 0.0; 0.0 1.0 0.0; 0.0 0.0 1.0] == [1 0 0; 0 1 0; 0 0 1] Stacktrace: [1] top-level scope @ ~/.julia/packages/Spglib/daKTm/test/magnetic.jl:358 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/Spglib/daKTm/test/magnetic.jl:414 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] Test centered monoclinic: Test Failed at /home/pkgeval/.julia/packages/Spglib/daKTm/test/magnetic.jl:613 Expression: dataset.transformation_matrix == [1.0 0.0 0.0; 0.0 0.0 -1.0; 1.0 1.0 0.0] Evaluated: [1.0 0.0 0.0; 0.0 0.0 -0.9999999999999998; 1.0 1.0 0.0] == [1.0 0.0 0.0; 0.0 0.0 -1.0; 1.0 1.0 0.0] Stacktrace: [1] top-level scope @ ~/.julia/packages/Spglib/daKTm/test/magnetic.jl:545 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/Spglib/daKTm/test/magnetic.jl:613 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] Test type IV: Test Failed at /home/pkgeval/.julia/packages/Spglib/daKTm/test/magnetic.jl:996 Expression: dataset.transformation_matrix == [-1.0 0.0 0.0; 0.0 1.0 0.0; 0.0 0.0 -1.0] Evaluated: [1.0 0.0 0.0; 0.0 1.0 0.0; 0.0 0.0 1.0000000000000002] == [-1.0 0.0 0.0; 0.0 1.0 0.0; 0.0 0.0 -1.0] Stacktrace: [1] top-level scope @ ~/.julia/packages/Spglib/daKTm/test/magnetic.jl:903 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/Spglib/daKTm/test/magnetic.jl:996 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] Test type IV: Test Failed at /home/pkgeval/.julia/packages/Spglib/daKTm/test/magnetic.jl:1001 Expression: dataset.origin_shift == [0.0, 0.0, 0.75] Evaluated: [0.0, 0.0, 0.25] == [0.0, 0.0, 0.75] Stacktrace: [1] top-level scope @ ~/.julia/packages/Spglib/daKTm/test/magnetic.jl:903 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/Spglib/daKTm/test/magnetic.jl:1001 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] Test type IV: Test Failed at /home/pkgeval/.julia/packages/Spglib/daKTm/test/magnetic.jl:1003 Expression: dataset.std_lattice ≈ Lattice([[-16.0831, 0.0, 0.0], [0.0, 4.3887, 0.0], [5.97205829, 0.0, -12.38135828]]) Evaluated: [16.0831 0.0 -5.972058289999997; 0.0 4.3887 0.0; 0.0 0.0 12.381358279999995] ≈ [-16.0831 0.0 5.97205829; 0.0 4.3887 0.0; 0.0 0.0 -12.38135828] Stacktrace: [1] top-level scope @ ~/.julia/packages/Spglib/daKTm/test/magnetic.jl:903 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/Spglib/daKTm/test/magnetic.jl:1003 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] Test type IV: Test Failed at /home/pkgeval/.julia/packages/Spglib/daKTm/test/magnetic.jl:1007 Expression: dataset.std_positions ≈ [[1.38777878e-17, 1.38777878e-17, 0.5], [0.5, 0.5, 0.5], [0.0, 0.0, 1.11022302e-16], [0.5, 0.5, 2.22044605e-16], [0.371, 0.5, 0.6915], [0.871, 0.0, 0.6915], [0.871, 0.0, 0.1915], [0.371, 0.5, 0.1915], [0.129, 2.77555756e-17, 0.3085], [0.629, 0.5, 0.3085], [0.629, 0.5, 0.8085], [0.129, 0.0, 0.8085]] Evaluated: StaticArraysCore.SVector{3, Float64}[[0.0, 0.0, 0.5], [0.5, 0.5, 0.5], [0.0, 0.0, 0.0], [0.5, 0.5, 0.0], [0.629, 0.5, 0.3085], [0.129, 0.0, 0.3085], [0.129, 0.0, 0.8085], [0.629, 0.5, 0.8085], [0.871, 0.0, 0.6915], [0.371, 0.5, 0.6915], [0.371, 0.5, 0.1915], [0.871, 0.0, 0.1915]] ≈ [[1.38777878e-17, 1.38777878e-17, 0.5], [0.5, 0.5, 0.5], [0.0, 0.0, 1.11022302e-16], [0.5, 0.5, 2.22044605e-16], [0.371, 0.5, 0.6915], [0.871, 0.0, 0.6915], [0.871, 0.0, 0.1915], [0.371, 0.5, 0.1915], [0.129, 2.77555756e-17, 0.3085], [0.629, 0.5, 0.3085], [0.629, 0.5, 0.8085], [0.129, 0.0, 0.8085]] Stacktrace: [1] top-level scope @ ~/.julia/packages/Spglib/daKTm/test/magnetic.jl:903 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/Spglib/daKTm/test/magnetic.jl:1007 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] Test nonstandard setting: Test Failed at /home/pkgeval/.julia/packages/Spglib/daKTm/test/magnetic.jl:1103 Expression: dataset.transformation_matrix == [0.0 -1.0 0.0; -1.0 0.0 0.0; 0.0 0.0 -1.0] Evaluated: [0.0 -0.9999999999999999 0.0; -1.0000000000000002 0.0 0.0; 0.0 0.0 -1.0] == [0.0 -1.0 0.0; -1.0 0.0 0.0; 0.0 0.0 -1.0] Stacktrace: [1] top-level scope @ ~/.julia/packages/Spglib/daKTm/test/magnetic.jl:1047 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/Spglib/daKTm/test/magnetic.jl:1103 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] Test nonstandard setting 2: Test Failed at /home/pkgeval/.julia/packages/Spglib/daKTm/test/magnetic.jl:1196 Expression: dataset.transformation_matrix == [-1.0 0.0 0.0; 0.0 0.0 -1.0; 0.0 -1.0 0.0] Evaluated: [-1.0 0.0 0.0; 0.0 0.0 -1.0000000000000002; 0.0 -1.0 0.0] == [-1.0 0.0 0.0; 0.0 0.0 -1.0; 0.0 -1.0 0.0] Stacktrace: [1] top-level scope @ ~/.julia/packages/Spglib/daKTm/test/magnetic.jl:1148 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/Spglib/daKTm/test/magnetic.jl:1196 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] Test type-II MSG: Test Failed at /home/pkgeval/.julia/packages/Spglib/daKTm/test/magnetic.jl:2434 Expression: all(dataset.std_positions .== [[1.110223024625157e-16, 1.110223024625157e-16, 0.0], [0.4999999999999999, 0.4999999999999999, 0.5], [0.35860000000000003, 0.2893, 0.0], [0.6414, 0.7107, 0.0], [0.14139999999999997, 0.7893, 0.5], [0.8586, 0.2106999999999999, 0.5]]) Evaluated: all(Bool[0, 0, 0, 0, 0, 0]) Stacktrace: [1] top-level scope @ ~/.julia/packages/Spglib/daKTm/test/magnetic.jl:2389 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/Spglib/daKTm/test/magnetic.jl:2423 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [5] macro expansion @ ~/.julia/packages/Spglib/daKTm/test/magnetic.jl:2434 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] [9] signal 11 (1): Segmentation fault in expression starting at /home/pkgeval/.julia/packages/Spglib/daKTm/test/standardize.jl:92 mat_free_VecDBL at /home/pkgeval/.julia/artifacts/ceefa619e483d9651436478e4956ba71abc49fc8/lib/libsymspg.so (unknown line) Allocations: 28113078 (Pool: 28112628; Big: 450); GC: 16 Testing failed after 41.26s ERROR: LoadError: Package Spglib errored during testing (received signal: 11) Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3067 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2916 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval crashed after 74.29s: a segmentation fault happened