Package evaluation to test MixedModels on Julia 1.14.0-DEV.1523 (e57442f29c*) started at 2026-01-12T08:20:31.947 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 7.58s ################################################################################ # Installation # Installing MixedModels... Resolving package versions... Installed CommonWorldInvalidations ──── v1.0.0 Installed Indexing ──────────────────── v1.1.1 Installed MacroTools ────────────────── v0.5.16 Installed CodecLz4 ──────────────────── v0.4.6 Installed DataStructures ────────────── v0.19.3 Installed ForwardDiff ───────────────── v1.3.1 Installed RegressionFormulae ────────── v0.1.4 Installed MixedModels ───────────────── v5.2.0 Installed DiffResults ───────────────── v1.1.0 Installed CodecZstd ─────────────────── v0.8.7 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed Lz4_jll ───────────────────── v1.10.1+0 Installed InlineStrings ─────────────── v1.4.5 Installed ArrowTypes ────────────────── v2.3.0 Installed FillArrays ────────────────── v1.15.0 Installed GLM ───────────────────────── v1.9.2 Installed StatsModels ───────────────── v0.7.7 Installed StringViews ───────────────── v1.3.6 Installed Adapt ─────────────────────── v4.4.0 Installed HypergeometricFunctions ───── v0.3.28 Installed SplitApplyCombine ─────────── v1.2.3 Installed AliasTables ───────────────── v1.1.3 Installed ConcurrentUtilities ───────── v2.5.0 Installed StatsBase ─────────────────── v0.34.9 Installed ExprTools ─────────────────── v0.1.10 Installed Compat ────────────────────── v4.18.1 Installed OrderedCollections ────────── v1.8.1 Installed ShiftedArrays ─────────────── v2.0.0 Installed Combinatorics ─────────────── v1.1.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed MixedModelsDatasets ───────── v0.1.2 Installed TranscodingStreams ────────── v0.11.3 Installed TimeZones ─────────────────── v1.22.2 Installed DataAPI ───────────────────── v1.16.0 Installed StatsAPI ──────────────────── v1.8.0 Installed DataValueInterfaces ───────── v1.0.0 Installed CEnum ─────────────────────── v0.5.0 Installed Statistics ────────────────── v1.11.1 Installed ProgressMeter ─────────────── v1.11.0 Installed CommonSubexpressions ──────── v0.3.1 Installed PrecompileTools ───────────── v1.3.3 Installed SentinelArrays ────────────── v1.4.9 Installed StaticArraysCore ──────────── v1.4.4 Installed IrrationalConstants ───────── v0.2.6 Installed NaNMath ───────────────────── v1.1.3 Installed SciMLPublic ───────────────── v1.0.1 Installed FastGaussQuadrature ───────── v1.1.0 Installed QuadGK ────────────────────── v2.11.2 Installed StaticArrays ──────────────── v1.9.16 Installed JSON3 ─────────────────────── v1.14.3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Requires ──────────────────── v1.3.1 Installed BitIntegers ───────────────── v0.3.7 Installed DiffRules ─────────────────── v1.15.1 Installed ArrayLayouts ──────────────── v1.12.2 Installed LogExpFunctions ───────────── v0.3.29 Installed Rmath ─────────────────────── v0.9.0 Installed Parsers ───────────────────── v2.8.3 Installed IfElse ────────────────────── v0.1.1 Installed StatsFuns ─────────────────── v1.5.2 Installed Tables ────────────────────── v1.12.1 Installed PtrArrays ─────────────────── v1.3.0 Installed TypedTables ───────────────── v1.4.6 Installed Distributions ─────────────── v0.25.123 Installed EnumX ─────────────────────── v1.0.5 Installed Reexport ──────────────────── v1.2.2 Installed Missings ──────────────────── v1.2.0 Installed Scratch ───────────────────── v1.3.0 Installed Static ────────────────────── v1.3.1 Installed SpecialFunctions ──────────── v2.6.1 Installed BandedMatrices ────────────── v1.11.0 Installed Preferences ───────────────── v1.5.1 Installed PooledArrays ──────────────── v1.4.3 Installed TableTraits ───────────────── v1.0.1 Installed JLLWrappers ───────────────── v1.7.1 Installed StructTypes ───────────────── v1.11.0 Installed NLopt ─────────────────────── v1.2.1 Installed PDMats ────────────────────── v0.11.37 Installed TZJData ───────────────────── v1.5.0+2025b Installed SortingAlgorithms ─────────── v1.2.2 Installed Dictionaries ──────────────── v0.4.6 Installed Mocking ───────────────────── v0.8.1 Installed NLopt_jll ─────────────────── v2.10.0+0 Installed DocStringExtensions ───────── v0.9.5 Installed Arrow ─────────────────────── v2.8.0 Installed BSplineKit ────────────────── v0.19.1 Installing 5 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact NLopt 322.7 KiB Installed artifact Lz4 239.7 KiB Installed artifact tzjdata 112.5 KiB Updating `~/.julia/environments/v1.14/Project.toml` [ff71e718] + MixedModels v5.2.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.12.2 [69666777] + Arrow v2.8.0 [31f734f8] + ArrowTypes v2.3.0 [093aae92] + BSplineKit v0.19.1 [aae01518] + BandedMatrices v1.11.0 [c3b6d118] + BitIntegers v0.3.7 [fa961155] + CEnum v0.5.0 [5ba52731] + CodecLz4 v0.4.6 [6b39b394] + CodecZstd v0.8.7 [861a8166] + Combinatorics v1.1.0 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [85a47980] + Dictionaries v0.4.6 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [e2ba6199] + ExprTools v0.1.10 [442a2c76] + FastGaussQuadrature v1.1.0 [1a297f60] + FillArrays v1.15.0 [f6369f11] + ForwardDiff v1.3.1 [38e38edf] + GLM v1.9.2 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [313cdc1a] + Indexing v1.1.1 [842dd82b] + InlineStrings v1.4.5 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [0f8b85d8] + JSON3 v1.14.3 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [ff71e718] + MixedModels v5.2.0 [7e9fb7ac] + MixedModelsDatasets v0.1.2 [78c3b35d] + Mocking v0.8.1 [76087f3c] + NLopt v1.2.1 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [545c379f] + RegressionFormulae v0.1.4 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [431bcebd] + SciMLPublic v1.0.1 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [03a91e81] + SplitApplyCombine v1.2.3 [aedffcd0] + Static v1.3.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.9 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.7 [354b36f9] + StringViews v1.3.6 [856f2bd8] + StructTypes v1.11.0 [dc5dba14] + TZJData v1.5.0+2025b [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [f269a46b] + TimeZones v1.22.2 [3bb67fe8] + TranscodingStreams v0.11.3 [9d95f2ec] + TypedTables v1.4.6 [5ced341a] + Lz4_jll v1.10.1+0 [079eb43e] + NLopt_jll v2.10.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Installation completed after 7.61s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 Precompilation failed after 12.62s ################################################################################ # Testing # Testing MixedModels Status `/tmp/jl_vRq5Uw/Project.toml` [4c88cf16] Aqua v0.8.14 [69666777] Arrow v2.8.0 [093aae92] BSplineKit v0.19.1 [324d7699] CategoricalArrays v1.0.2 [34da2185] Compat v4.18.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [31c24e10] Distributions v0.25.123 [7d51a73a] ExplicitImports v1.14.1 [6a86dc24] FiniteDiff v2.29.0 [f6369f11] ForwardDiff v1.3.1 [38e38edf] GLM v1.9.2 [0f8b85d8] JSON3 v1.14.3 [ff71e718] MixedModels v5.2.0 [7e9fb7ac] MixedModelsDatasets v0.1.2 [76087f3c] NLopt v1.2.1 [0a7d04aa] PRIMA v0.2.4 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [92933f4c] ProgressMeter v1.11.0 [545c379f] RegressionFormulae v0.1.4 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.16 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.9 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.7 [856f2bd8] StructTypes v1.11.0 [fd094767] Suppressor v0.2.8 [bd369af6] Tables v1.12.1 [9d95f2ec] TypedTables v1.4.6 [b77e0a4c] InteractiveUtils v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_vRq5Uw/Manifest.toml` [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [4fba245c] ArrayInterface v7.22.0 [4c555306] ArrayLayouts v1.12.2 [69666777] Arrow v2.8.0 [31f734f8] ArrowTypes v2.3.0 [093aae92] BSplineKit v0.19.1 [aae01518] BandedMatrices v1.11.0 [c3b6d118] BitIntegers v0.3.7 [fa961155] CEnum v0.5.0 [324d7699] CategoricalArrays v1.0.2 [5ba52731] CodecLz4 v0.4.6 [6b39b394] CodecZstd v0.8.7 [861a8166] Combinatorics v1.1.0 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [85a47980] Dictionaries v0.4.6 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [7d51a73a] ExplicitImports v1.14.1 [e2ba6199] ExprTools v0.1.10 [442a2c76] FastGaussQuadrature v1.1.0 [1a297f60] FillArrays v1.15.0 [6a86dc24] FiniteDiff v2.29.0 [f6369f11] ForwardDiff v1.3.1 [38e38edf] GLM v1.9.2 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [313cdc1a] Indexing v1.1.1 [842dd82b] InlineStrings v1.4.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [0f8b85d8] JSON3 v1.14.3 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [ff71e718] MixedModels v5.2.0 [7e9fb7ac] MixedModelsDatasets v0.1.2 [78c3b35d] Mocking v0.8.1 [76087f3c] NLopt v1.2.1 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [0a7d04aa] PRIMA v0.2.4 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [545c379f] RegressionFormulae v0.1.4 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [431bcebd] SciMLPublic v1.0.1 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.9 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [03a91e81] SplitApplyCombine v1.2.3 [860ef19b] StableRNGs v1.0.4 [aedffcd0] Static v1.3.1 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.9 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.7 [892a3eda] StringManipulation v0.4.2 [354b36f9] StringViews v1.3.6 [856f2bd8] StructTypes v1.11.0 [fd094767] Suppressor v0.2.8 [dc5dba14] TZJData v1.5.0+2025b [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [f269a46b] TimeZones v1.22.2 [3bb67fe8] TranscodingStreams v0.11.3 [c3b1956e] TypeUtils v1.14.0 [9d95f2ec] TypedTables v1.4.6 [5ced341a] Lz4_jll v1.10.1+0 [079eb43e] NLopt_jll v2.10.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [eead6e0c] PRIMA_jll v0.7.1+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Testing Running tests... WARNING: Constructor for type "Type" was extended in `Flatbuf` without explicit qualification or import.  NOTE: Assumed "Type" refers to `Base.Type`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Type end`.  Hint: To silence the warning, qualify `Type` as `Base.Type` in the method signature or explicitly `import Base: Type`.  Downloading artifact: TestData 2 dependencies had output during precompilation: ┌ MixedModels │ [Output was shown above] └ ┌ Arrow │ WARNING: Constructor for type "Type" was extended in `Flatbuf` without explicit qualification or import. │ NOTE: Assumed "Type" refers to `Base.Type`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Type end`. │ Hint: To silence the warning, qualify `Type` as `Base.Type` in the method signature or explicitly `import Base: Type`. └ ┌ Info: Julia Version 1.14.0-DEV.1523 │ Commit e57442f29c* (2026-01-08 10:53 UTC) │ Platform Info: │ OS: Linux (x86_64-linux-gnu) │ CPU: 128 × AMD EPYC 7502 32-Core Processor │ WORD_SIZE: 64 │ LLVM: libLLVM-20.1.8 (ORCJIT, znver2) │ GC: Built with stock GC │ Threads: 1 default, 0 interactive, 1 GC (on 1 virtual cores) │ Environment: │ JULIA_CPU_THREADS = 1 │ JULIA_NUM_PRECOMPILE_TASKS = 1 │ JULIA_PKG_PRECOMPILE_AUTO = 0 │ JULIA_PKGEVAL = true │ JULIA_DEPOT_PATH = /home/pkgeval/.julia:/usr/local/share/julia: │ JULIA_NUM_THREADS = 1 └ JULIA_LOAD_PATH = @:/tmp/jl_vRq5Uw [ Info: LBTConfig([ILP64] libopenblas64_.so) Test Summary: | Pass Total Time Aqua | 9 9 2m07.4s Test Summary: | Pass Total Time ExplicitImports | 2 2 52.2s Test Summary: | Pass Total Time average | 1 1 0.1s Test Summary: | Pass Total Time densify | 3 3 1.3s Test Summary: | Pass Total Time isconstant | 13 13 1.9s Test Summary: | Pass Total Time PCA | 3 3 38.0s Test Summary: | Pass Total Time formula | 2 2 27.2s Test Summary: | Pass Total Time formula misspecification | 8 8 13.2s Test Summary: | Pass Total Time non-unicode function aliases for exports | 2 2 0.0s Test Summary: | Pass Total Time fullranknumeric | 1 1 1.1s Test Summary: | Pass Total Time fullrankcategorical | 2 2 4.1s Test Summary: | Pass Total Time dependentcolumn | 4 4 0.9s Test Summary: | Pass Total Time qr missing cells | 2 2 0.1s Test Summary: | Pass Total Time zero columns in X | 2 2 0.0s Test Summary: | Pass Total Time UBlk | 24 24 13.4s Test Summary: | Pass Total Time mul! | 36 36 1.9s ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ caller = fit(::Type{LinearMixedModel}, f::FormulaTerm{Term, Tuple{ConstantTerm{Int64}, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{Y::Vector{Float64}, A::PooledVector{String, UInt32, Vector{UInt32}}, G::PooledVector{String, UInt32, Vector{UInt32}}, H::PooledVector{String, UInt32, Vector{UInt32}}}; weights::Vector{Any}, wts::Vector{Float64}, contrasts::Dict{Symbol, Any}, σ::Nothing, amalgamate::Bool, kwargs::Base.Pairs{Symbol, Bool, Nothing, @NamedTuple{progress::Bool}}) at linearmixedmodel.jl:219 └ @ Core ~/.julia/packages/MixedModels/pMQDc/src/linearmixedmodel.jl:219 Test Summary: | Pass Total Time reweight! | 2 2 10.7s Test Summary: | Pass Total Time rankupdate! | 2 2 2.4s Test Summary: | Pass Total Time lmulλ! | 1 1 8.9s Test Summary: | Pass Total Time Xymat | 10 10 0.8s Test Summary: | Pass Broken Total Time XymatSparse | 12 1 13 39.8s Test Summary: | Pass Total Time scalarReMat | 39 39 12.6s Test Summary: | Pass Total Time RandomEffectsTerm | 18 18 18.0s Test Summary: | Pass Total Time random effects term syntax | 24 24 28.1s Test Summary: | Pass Total Time Grouping | 1 1 0.7s Test Summary: | Pass Total Time Grouping pseudo-contrasts | 10 10 11.4s Test Summary: | Pass Broken Total Time Auto application of Grouping() | 36 3 39 14.3s Test Summary: | Pass Total Time LMM from MixedModel | 3 3 5.9s Test Summary: | Pass Total Time offset | 2 2 1.0s Test Summary: | Pass Total Time Dyestuff | 83 83 41.3s ┌ Warning: NLopt was roundoff limited └ @ MixedModels.MixedModelsNLoptExt ~/.julia/packages/MixedModels/pMQDc/src/MixedModelsNLoptExt.jl:132 ┌ Warning: NLopt was roundoff limited └ @ MixedModels.MixedModelsNLoptExt ~/.julia/packages/MixedModels/pMQDc/src/MixedModelsNLoptExt.jl:132 ┌ Warning: NLopt was roundoff limited └ @ MixedModels.MixedModelsNLoptExt ~/.julia/packages/MixedModels/pMQDc/src/MixedModelsNLoptExt.jl:132 ┌ Warning: NLopt was roundoff limited └ @ MixedModels.MixedModelsNLoptExt ~/.julia/packages/MixedModels/pMQDc/src/MixedModelsNLoptExt.jl:132 ┌ Warning: NLopt was roundoff limited └ @ MixedModels.MixedModelsNLoptExt ~/.julia/packages/MixedModels/pMQDc/src/MixedModelsNLoptExt.jl:132 ┌ Warning: NLopt was roundoff limited └ @ MixedModels.MixedModelsNLoptExt ~/.julia/packages/MixedModels/pMQDc/src/MixedModelsNLoptExt.jl:132 Test Summary: | Pass Total Time Dyestuff2 | 11 11 5.6s Test Summary: | Pass Total Time penicillin | 26 26 5.3s Test Summary: | Pass Total Time pastes | 22 22 6.0s Test Summary: | Pass Total Time InstEval | 21 21 2.8s ┌ Warning: optsum was saved with an older version of MixedModels.jl: consider resaving. └ @ MixedModels ~/.julia/packages/MixedModels/pMQDc/src/serialization.jl:124 ┌ Warning: optsum was saved with an older version of MixedModels.jl: consider resaving. └ @ MixedModels ~/.julia/packages/MixedModels/pMQDc/src/serialization.jl:124 ┌ Warning: optsum was saved with an older version of MixedModels.jl: consider resaving. └ @ MixedModels ~/.julia/packages/MixedModels/pMQDc/src/serialization.jl:124 ┌ Warning: optsum was saved with an older version of MixedModels.jl: consider resaving. └ @ MixedModels ~/.julia/packages/MixedModels/pMQDc/src/serialization.jl:124 Test Summary: | Pass Total Time sleep | 135 135 1m08.2s Test Summary: | Pass Total Time d3 | 6 6 22.7s Test Summary: | Pass Total Time kb07 | 6 6 18.6s Test Summary: | Pass Total Time oxide | 1 1 12.7s Test Summary: | Pass Total Time Rank deficient | 7 7 4.1s Test Summary: | Pass Total Time coeftable | 1 1 0.0s ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ caller = fit(::Type{LinearMixedModel}, f::FormulaTerm{Term, Tuple{ConstantTerm{Int64}, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{a::Vector{Float64}, b::Vector{Float64}, c::PooledVector{String, UInt32, Vector{UInt32}}, w1::Vector{Int64}, w2::Vector{Float64}}; weights::Vector{Any}, wts::Vector{Int64}, contrasts::Dict{Symbol, Any}, σ::Nothing, amalgamate::Bool, kwargs::Base.Pairs{Symbol, Bool, Nothing, @NamedTuple{progress::Bool}}) at linearmixedmodel.jl:219 └ @ Core ~/.julia/packages/MixedModels/pMQDc/src/linearmixedmodel.jl:219 Test Summary: | Pass Total Time wts | 3 3 2.9s Test Summary: | Pass Total Time unifying ReMat eltypes | 3 3 2.6s Test Summary: | Pass Total Time recovery from misscaling | 2 2 7.9s Test Summary: | Pass Total Time methods we don't define | 4 4 0.7s Test Summary: | Pass Total Time GLMM from MixedModel | 2 2 9.1s Test Summary: | Pass Total Time Type for instance | 9 9 0.2s Test Summary: | Pass Total Time contra | 41 41 13.3s ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ caller = fit(::Type{GeneralizedLinearMixedModel}, f::FormulaTerm{FunctionTerm{typeof(/), Vector{Term}}, Tuple{ConstantTerm{Int64}, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{herd::Arrow.DictEncoded{String, Int8, Arrow.List{String, Int32, Vector{UInt8}}}, period::Arrow.DictEncoded{String, Int8, Arrow.List{String, Int32, Vector{UInt8}}}, incid::Arrow.Primitive{Int8, Vector{Int8}}, hsz::Arrow.Primitive{Int8, Vector{Int8}}}, d::Binomial{Float64}, l::LogitLink; weights::Vector{Any}, wts::Vector{Float64}, contrasts::Dict{Symbol, Any}, offset::Vector{Any}, amalgamate::Bool, kwargs::Base.Pairs{Symbol, Any, Nothing, @NamedTuple{progress::Bool, init_from_lmm::Vector{Symbol}}}) at generalizedlinearmixedmodel.jl:187 └ @ Core ~/.julia/packages/MixedModels/pMQDc/src/generalizedlinearmixedmodel.jl:187 ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ caller = GeneralizedLinearMixedModel(f::FormulaTerm{FunctionTerm{typeof(/), Vector{Term}}, Tuple{ConstantTerm{Int64}, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::DataFrame, d::Binomial{Float64}, l::LogitLink; kwargs::Base.Pairs{Symbol, Vector{Float64}, Nothing, @NamedTuple{wts::Vector{Float64}}}) at generalizedlinearmixedmodel.jl:352 └ @ Core ~/.julia/packages/MixedModels/pMQDc/src/generalizedlinearmixedmodel.jl:352 Test Summary: | Pass Total Time cbpp | 19 19 17.4s Test Summary: | Pass Total Time verbagg | 4 4 11.3s Test Summary: | Pass Total Time grouseticks | 8 8 56.7s Test Summary: | Pass Total Time dispersion | 3 3 9.8s Test Summary: | Pass Total Time mmec | 4 4 3.9s ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ caller = GeneralizedLinearMixedModel(f::FormulaTerm{FunctionTerm{typeof(/), Vector{Term}}, Tuple{ConstantTerm{Int64}, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::Arrow.Table, d::Binomial{Float64}, l::LogitLink; kwargs::Base.Pairs{Symbol, Arrow.Primitive{Int8, Vector{Int8}}, Nothing, @NamedTuple{wts::Arrow.Primitive{Int8, Vector{Int8}}}}) at generalizedlinearmixedmodel.jl:352 └ @ Core ~/.julia/packages/MixedModels/pMQDc/src/generalizedlinearmixedmodel.jl:352 Test Summary: | Pass Total Time GLMM saveoptsum | 6 6 2.5s Test Summary: | Pass Total Time Bad initial value | 2 2 12.3s Test Summary: | Pass Total Time GHnorm | 5 5 0.4s Test Summary: | Pass Total Time linear, and lmm wrapper | 8 8 0.7s Test Summary: | Pass Total Time generalized | 1 1 8.0s Test Summary: | Pass Total Time Normal-IdentityLink | 2 2 0.1s Test Summary: | Pass Total Time Normal Distribution GLMM | 1 1 1.8s Test Summary: | Pass Total Time Missing Omit | 2 2 3.7s ┌ Error: Random effects are not nested. └ @ MixedModels ~/.julia/packages/MixedModels/pMQDc/src/likelihoodratiotest.jl:253 ┌ Error: Fixed effects are not nested. └ @ MixedModels ~/.julia/packages/MixedModels/pMQDc/src/likelihoodratiotest.jl:231 ┌ Error: Inner models have grouping variables not present in outer models. └ @ MixedModels ~/.julia/packages/MixedModels/pMQDc/src/likelihoodratiotest.jl:240 Test Summary: | Pass Total Time isnested | 5 5 7.4s Test Summary: | Pass Total Time likelihoodratio test | 22 22 26.2s ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ caller = fit(::Type{GeneralizedLinearMixedModel}, f::FormulaTerm{FunctionTerm{typeof(/), Vector{Term}}, Tuple{ConstantTerm{Int64}, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{herd::Arrow.DictEncoded{String, Int8, Arrow.List{String, Int32, Vector{UInt8}}}, period::Arrow.DictEncoded{String, Int8, Arrow.List{String, Int32, Vector{UInt8}}}, incid::Arrow.Primitive{Int8, Vector{Int8}}, hsz::Arrow.Primitive{Int8, Vector{Int8}}}, d::Binomial{Float64}, l::LogitLink; weights::Vector{Any}, wts::Vector{Float64}, contrasts::Dict{Symbol, Any}, offset::Vector{Any}, amalgamate::Bool, kwargs::Base.Pairs{Symbol, Bool, Nothing, @NamedTuple{progress::Bool}}) at generalizedlinearmixedmodel.jl:187 └ @ Core ~/.julia/packages/MixedModels/pMQDc/src/generalizedlinearmixedmodel.jl:187 Test Summary: | Pass Total Time simulate!(::MixedModel) | 9 9 9.8s ┌ Warning: Fixed-effects matrix is rank deficient └ @ MixedModels ~/.julia/packages/MixedModels/pMQDc/src/Xymat.jl:41 Test Summary: | Pass Total Time bootstrap | 52 52 2m13.1s Test Summary: | Pass Total Time show and summary | 7 7 9.8s Test Summary: | Pass Total Time markdown | 10 10 7.6s html: Test Failed at /home/pkgeval/.julia/packages/MixedModels/pMQDc/test/mime.jl:177 Expression: occursin("LN_BOBYQA", optsum) Evaluated: occursin("LN_BOBYQA", "
Initialization
Initial parameter vector[1.0]
Initial objective value1794.774198037785
Optimizer settings
Optimizer`LN_BOBYQA`
Backend`nlopt`
ftol_rel1.0e-12
ftol_abs1.0e-8
xtol_rel0.0
xtol_abs[1.0e-10]
initial_step[1.0]
maxfeval-1
maxtime-1.0
xtol_zero_abs0.001
ftol_zero_abs1.0e-5
Result
Function evaluations1
Final parameter vector[1.1656]
Final objective value1794.0786
Return code`FTOL_REACHED`
\n") Stacktrace: [1] top-level scope @ ~/.julia/packages/MixedModels/pMQDc/test/mime.jl:171 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2156 [inlined] [3] macro expansion @ ~/.julia/packages/MixedModels/pMQDc/test/mime.jl:177 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] Test Summary: | Pass Fail Total Time html | 2 1 3 5.1s RNG of the outermost testset: Xoshiro(0x27a9939d1e71a269, 0xa289feb037c7955a, 0xc74b0c32c9177cc1, 0x066705583ce76d1c, 0x208ff2155d91ce00) ERROR: LoadError: Some tests did not pass: 2 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MixedModels/pMQDc/test/mime.jl:168 in expression starting at /home/pkgeval/.julia/packages/MixedModels/pMQDc/test/runtests.jl:46 Testing failed after 1827.32s ERROR: LoadError: Package MixedModels errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3122 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2987 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval failed after 1900.34s: package has test failures