Package evaluation to test TransmissionChannelAnalysis on Julia 1.14.0-DEV.1475 (42ad41c179*) started at 2026-01-04T15:32:54.594 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 9.45s ################################################################################ # Installation # Installing TransmissionChannelAnalysis... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [d500094b] + TransmissionChannelAnalysis v0.2.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [861a8166] + Combinatorics v1.1.0 [34da2185] + Compat v4.18.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [189a3867] + Reexport v1.2.2 [91c51154] + SentinelArrays v1.4.9 [a2af1166] + SortingAlgorithms v1.2.2 [10745b16] + Statistics v1.11.1 [892a3eda] + StringManipulation v0.4.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [d500094b] + TransmissionChannelAnalysis v0.2.0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.22s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 Precompilation failed after 13.24s ################################################################################ # Testing # Testing TransmissionChannelAnalysis Status `/tmp/jl_kjJpKZ/Project.toml` [861a8166] Combinatorics v1.1.0 [a93c6f00] DataFrames v1.8.1 ⌅ [682c06a0] JSON v0.21.4 [d500094b] TransmissionChannelAnalysis v0.2.0 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [9e88b42a] Serialization v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_kjJpKZ/Manifest.toml` [861a8166] Combinatorics v1.1.0 [34da2185] Compat v4.18.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [189a3867] Reexport v1.2.2 [91c51154] SentinelArrays v1.4.9 [a2af1166] SortingAlgorithms v1.2.2 [10745b16] Statistics v1.11.1 [892a3eda] StringManipulation v0.4.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [d500094b] TransmissionChannelAnalysis v0.2.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time Utils | 19 19 4.2s Test Summary: | Pass Total Time Representation | 14 14 10.9s [ Info: Using method :BOmega to calculate transmission effect. [ Info: Using method :irfs to calculate transmission effect. create_transmission_function: Test Failed at /home/pkgeval/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:10 Expression: isapprox(mat[:, 1], mat[:, 4]; atol = sqrt(eps())) Evaluated: isapprox([2.1667842882283024, 0.0, -2.9849714175541595, 0.27551276438827765, 0.0, -1.6706139405326756], [4.333568576456605, -2.4339027166510006, -3.812545456127995, 0.5510255287765553, -0.4375062083084245, -2.133786457875311]; atol = 1.4901161193847656e-8) Stacktrace: [1] top-level scope @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:10 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] create_transmission_function: Test Failed at /home/pkgeval/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:14 Expression: isapprox(mat[:, 1], mat[:, 4]; atol = sqrt(eps())) Evaluated: isapprox([-2.9849714175541595, 0.27551276438827765, 0.0, -1.6706139405326756], [-3.812545456127995, 0.5510255287765553, -0.4375062083084245, -2.133786457875311]; atol = 1.4901161193847656e-8) Stacktrace: [1] top-level scope @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:14 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] [ Info: Using method :BOmega to calculate transmission effect. [ Info: Using method :irfs to calculate transmission effect. create_transmission_function: Test Failed at /home/pkgeval/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:17 Expression: isapprox(mat[:, 1], mat[:, 4]; atol = sqrt(eps())) Evaluated: isapprox([-0.0, -0.0, -2.9849714175541595, -0.0, -0.0, -1.6706139405326756], [-0.0, -0.0, -3.812545456127995, -0.0, -0.0, -2.133786457875311]; atol = 1.4901161193847656e-8) Stacktrace: [1] top-level scope @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:17 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] create_transmission_function: Test Failed at /home/pkgeval/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:21 Expression: isapprox(mat[:, 1], mat[:, 4]; atol = sqrt(eps())) Evaluated: isapprox([-0.0, -0.0, -1.6706139405326756], [-0.0, -0.0, -2.133786457875311]; atol = 1.4901161193847656e-8) Stacktrace: [1] top-level scope @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:21 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] [ Info: Using method :BOmega to calculate transmission effect. [ Info: Using method :irfs to calculate transmission effect. [ Info: Using method :BOmega to calculate transmission effect. [ Info: Using method :irfs to calculate transmission effect. create_transmission_function: Test Failed at /home/pkgeval/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:31 Expression: isapprox(mat[:, 1], mat[:, 4]; atol = sqrt(eps())) Evaluated: isapprox([-0.0, -2.4339027166510006, -2.9849714175541595, -0.0, -0.43750620830842457, -1.6706139405326759], [-0.0, -4.867805433302001, -1.6551480771476705, -0.0, -0.8750124166168493, -0.9263450346852715]; atol = 1.4901161193847656e-8) Stacktrace: [1] top-level scope @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:31 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] create_transmission_function: Test Failed at /home/pkgeval/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:35 Expression: isapprox(mat[:, 1], mat[:, 4]; atol = sqrt(eps())) Evaluated: isapprox([-0.0, -0.43750620830842457, -1.6706139405326759], [-0.0, -0.8750124166168493, -0.9263450346852715]; atol = 1.4901161193847656e-8) Stacktrace: [1] top-level scope @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:35 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] [ Info: Using method :BOmega to calculate transmission effect. [ Info: Using method :irfs to calculate transmission effect. create_transmission_function: Test Failed at /home/pkgeval/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:38 Expression: isapprox(mat[:, 1], mat[:, 4]; atol = sqrt(eps())) Evaluated: isapprox([0.0, -2.4339027166510006, 2.1573973789803245, 0.0, -0.43750620830842457, 1.2074414231900399], [0.0, -4.867805433302001, 4.314794757960649, 0.0, -0.875012416616849, 2.4148828463800793]; atol = 1.4901161193847656e-8) Stacktrace: [1] top-level scope @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:38 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] create_transmission_function: Test Failed at /home/pkgeval/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:42 Expression: isapprox(mat[:, 1], mat[:, 4]; atol = sqrt(eps())) Evaluated: isapprox([1.2074414231900399], [2.4148828463800793]; atol = 1.4901161193847656e-8) Stacktrace: [1] top-level scope @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:42 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] [ Info: Using method :BOmega to calculate transmission effect. [ Info: Using method :irfs to calculate transmission effect. create_transmission_function: Test Failed at /home/pkgeval/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:45 Expression: isapprox(mat[:, 1], mat[:, 4]; atol = sqrt(eps())) Evaluated: isapprox([0.0, -2.4339027166510006, 0.0, 0.0, 0.0, -0.3878029884411187], [0.0, -4.867805433302001, 2.1573973789803245, 0.0, -0.4375062083084246, 0.8196384347489212]; atol = 1.4901161193847656e-8) Stacktrace: [1] top-level scope @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:45 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] create_transmission_function: Test Failed at /home/pkgeval/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:48 Expression: isapprox(mat[:, 1], mat[:, 4]; atol = sqrt(eps())) Evaluated: isapprox([-0.3878029884411187], [0.8196384347489212]; atol = 1.4901161193847656e-8) Stacktrace: [1] top-level scope @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:48 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] [ Info: Using method :BOmega to calculate transmission effect. [ Info: Using method :irfs to calculate transmission effect. create_transmission_function: Test Failed at /home/pkgeval/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:52 Expression: isapprox(mat[:, 1], mat[:, 4]; atol = sqrt(eps())) Evaluated: isapprox([2.1667842882283024, -2.4339027166510006, -0.8275740385738352, 0.27551276438827765, -0.43750620830842457, -0.46317251734263565], [4.333568576456605, -4.867805433302001, -1.6551480771476703, 0.5510255287765553, -0.8750124166168491, -0.9263450346852713]; atol = 1.4901161193847656e-8) Stacktrace: [1] top-level scope @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:52 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] Test Summary: | Pass Fail Total Time TransmissionChannelAnalysis.jl REMOVE_CONTRADICTIONS = true | 71 11 82 28.4s Q constructors | 5 5 0.6s collect_terms | 6 6 1.1s string_and | 5 5 1.4s AND | 7 7 2.4s OR | 10 10 1.4s NOT | 24 24 0.3s create_transmission_function | 14 11 25 21.0s RNG of the outermost testset: Xoshiro(0x42c1c126c0a46708, 0x28e01c55565c66a8, 0xc61a9d25b7e51633, 0x52e73a393039f007, 0xe039bf73acc89a30) ERROR: LoadError: Some tests did not pass: 71 passed, 11 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/runtests.jl:23 Testing failed after 139.97s ERROR: LoadError: Package TransmissionChannelAnalysis errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3067 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2916 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval failed after 190.58s: package has test failures