Package evaluation to test SingleCellProjections on Julia 1.14.0-DEV.1475 (42ad41c179*) started at 2026-01-04T21:42:48.209 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 9.89s ################################################################################ # Installation # Installing SingleCellProjections... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [03d38035] + SingleCellProjections v0.4.4 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [a74b3585] + Blosc v0.7.3 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.13 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [1a297f60] + FillArrays v1.15.0 [6a86dc24] + FiniteDiff v2.29.0 [f6369f11] + ForwardDiff v1.3.1 [c8ec2601] + H5Zblosc v0.1.2 [f67ccb44] + HDF5 v0.17.2 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [49dc5b4e] + KernelDensitySJ v0.2.2 [b964fa9f] + LaTeXStrings v1.4.0 [d3d80556] + LineSearches v7.5.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.26 [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v2.2.10 [f56ea72b] + SCTransform v0.3.1 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [efcf1570] + Setfield v1.1.2 [eddce310] + SingleCell10x v0.2.2 [03d38035] + SingleCellProjections v0.4.4 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [c5dd0088] + StableHashTraits v2.0.2 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.9 [4c63d2b9] + StatsFuns v1.5.2 [892a3eda] + StringManipulation v0.4.2 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [59d54670] + ThreadedSparseArrays v0.2.3 [3bb67fe8] + TranscodingStreams v0.11.3 [9d95972d] + TupleTools v1.6.0 [0b7ba130] + Blosc_jll v1.21.7+0 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] + libaec_jll v1.1.4+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 9.39s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 Precompilation failed after 12.72s ################################################################################ # Testing # Testing SingleCellProjections Status `/tmp/jl_DIjaK7/Project.toml` [1520ce14] AbstractTrees v0.4.5 [944b1d66] CodecZlib v0.7.8 [a93c6f00] DataFrames v1.8.1 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.122 [38e38edf] GLM v1.9.1 [c8ec2601] H5Zblosc v0.1.2 [f67ccb44] HDF5 v0.17.2 [09f84164] HypothesisTests v0.11.6 [e1d29d7a] Missings v1.2.0 [b8a86587] NearestNeighbors v0.4.26 [aea7be01] PrecompileTools v1.3.3 [6a3ba550] PrincipalMomentAnalysis v0.2.2 [f56ea72b] SCTransform v0.3.1 [eddce310] SingleCell10x v0.2.2 [03d38035] SingleCellProjections v0.4.4 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.16 [10745b16] Statistics v1.11.1 [24678dba] TSne v1.3.0 [59d54670] ThreadedSparseArrays v0.2.3 [c4f8c510] UMAP v0.1.11 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_DIjaK7/Manifest.toml` [47edcb42] ADTypes v1.21.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.22.0 [a74b3585] Blosc v0.7.3 [944b1d66] CodecZlib v0.7.8 [861a8166] Combinatorics v1.1.0 [38540f10] CommonSolve v0.2.6 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.13 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [1a297f60] FillArrays v1.15.0 [6a86dc24] FiniteDiff v2.29.0 [f6369f11] ForwardDiff v1.3.1 [38e38edf] GLM v1.9.1 [86223c79] Graphs v1.13.3 [c8ec2601] H5Zblosc v0.1.2 [f67ccb44] HDF5 v0.17.2 [34004b35] HypergeometricFunctions v0.3.28 [09f84164] HypothesisTests v0.11.6 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [49dc5b4e] KernelDensitySJ v0.2.2 [b964fa9f] LaTeXStrings v1.4.0 [d3d80556] LineSearches v7.5.1 [2ab3a3ac] LogExpFunctions v0.3.29 [2fda8390] LsqFit v0.15.1 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [dd2c4c9e] NearestNeighborDescent v0.3.8 [b8a86587] NearestNeighbors v0.4.26 [429524aa] Optim v1.13.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [6a3ba550] PrincipalMomentAnalysis v0.2.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [f2b01f46] Roots v2.2.10 [f56ea72b] SCTransform v0.3.1 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.9 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [699a6c99] SimpleTraits v0.9.5 [eddce310] SingleCell10x v0.2.2 [03d38035] SingleCellProjections v0.4.4 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [c5dd0088] StableHashTraits v2.0.2 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.9 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.7 [892a3eda] StringManipulation v0.4.2 [856f2bd8] StructTypes v1.11.0 [24678dba] TSne v1.3.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [59d54670] ThreadedSparseArrays v0.2.3 [3bb67fe8] TranscodingStreams v0.11.3 [9d95972d] TupleTools v1.6.0 [c4f8c510] UMAP v0.1.11 ⌅ [68821587] Arpack_jll v3.5.2+0 [0b7ba130] Blosc_jll v1.21.7+0 ⌅ [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.2+0 [94ce4f54] Libiconv_jll v1.18.0+0 [5ced341a] Lz4_jll v1.10.1+0 [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.9+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] libaec_jll v1.1.4+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for SingleCellProjections [03d38035-ed2f-4a36-82eb-797f1727ab2e] │ exception = Required dependency Base.PkgId(Base.UUID("a93c6f00-e57d-5684-b7b6-d8193f3e46c0"), "DataFrames") failed to load from a cache file. └ @ Base loading.jl:2950 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("03d38035-ed2f-4a36-82eb-797f1727ab2e"), "SingleCellProjections") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2873  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2725  [4] macro expansion  @ ./loading.jl:2653 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2617  [7] require  @ ./loading.jl:2593 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using  @ ./module.jl:137 [inlined]  [11] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [12] top-level scope  @ ~/.julia/packages/SingleCellProjections/30C4U/ext/SingleCellProjectionsStableRNGsExt.jl:3  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3309  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3151  [18] include_string  @ ./loading.jl:3161 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [20] _start()  @ Base ./client.jl:585 in expression starting at /home/pkgeval/.julia/packages/SingleCellProjections/30C4U/ext/SingleCellProjectionsStableRNGsExt.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ SingleCellProjections → SingleCellProjectionsStableRNGsExt │ [Output was shown above] └ ┌ Error: Error during loading of extension SingleCellProjectionsStableRNGsExt of SingleCellProjections, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 1 package failed to precompile: │ │ SingleCellProjections → SingleCellProjectionsStableRNGsExt │ Failed to precompile SingleCellProjectionsStableRNGsExt [6d310f92-1197-5329-a5f0-0e293316c61c] to "/home/pkgeval/.julia/compiled/v1.14/SingleCellProjectionsStableRNGsExt/jl_q74Kmt" (ProcessExited(1)). │ └ @ Base loading.jl:1781 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("03d38035-ed2f-4a36-82eb-797f1727ab2e"), "SingleCellProjections") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2873  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2725  [4] macro expansion  @ ./loading.jl:2653 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2617  [7] require  @ ./loading.jl:2593 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using  @ ./module.jl:137 [inlined]  [11] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [12] top-level scope  @ ~/.julia/packages/SingleCellProjections/30C4U/ext/SingleCellProjectionsUMAPExt.jl:3  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3309  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3151  [18] include_string  @ ./loading.jl:3161 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [20] _start()  @ Base ./client.jl:585 in expression starting at /home/pkgeval/.julia/packages/SingleCellProjections/30C4U/ext/SingleCellProjectionsUMAPExt.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ SingleCellProjections → SingleCellProjectionsUMAPExt │ [Output was shown above] └ ┌ Error: Error during loading of extension SingleCellProjectionsUMAPExt of SingleCellProjections, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 1 package failed to precompile: │ │ SingleCellProjections → SingleCellProjectionsUMAPExt │ Failed to precompile SingleCellProjectionsUMAPExt [e1427d82-b481-5941-b1ad-1de2475103bb] to "/home/pkgeval/.julia/compiled/v1.14/SingleCellProjectionsUMAPExt/jl_yktFjn" (ProcessExited(1)). │ └ @ Base loading.jl:1781 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("03d38035-ed2f-4a36-82eb-797f1727ab2e"), "SingleCellProjections") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2873  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2725  [4] macro expansion  @ ./loading.jl:2653 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2617  [7] require  @ ./loading.jl:2593 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using  @ ./module.jl:137 [inlined]  [11] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [12] top-level scope  @ ~/.julia/packages/SingleCellProjections/30C4U/ext/SingleCellProjectionsTSneExt.jl:3  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3309  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3151  [18] include_string  @ ./loading.jl:3161 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [20] _start()  @ Base ./client.jl:585 in expression starting at /home/pkgeval/.julia/packages/SingleCellProjections/30C4U/ext/SingleCellProjectionsTSneExt.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ SingleCellProjections → SingleCellProjectionsTSneExt │ [Output was shown above] └ ┌ Error: Error during loading of extension SingleCellProjectionsTSneExt of SingleCellProjections, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 1 package failed to precompile: │ │ SingleCellProjections → SingleCellProjectionsTSneExt │ Failed to precompile SingleCellProjectionsTSneExt [fb04b7a8-091b-5ad3-9133-477849af3afe] to "/home/pkgeval/.julia/compiled/v1.14/SingleCellProjectionsTSneExt/jl_JegGy6" (ProcessExited(1)). │ └ @ Base loading.jl:1781 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("03d38035-ed2f-4a36-82eb-797f1727ab2e"), "SingleCellProjections") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2873  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2725  [4] macro expansion  @ ./loading.jl:2653 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2617  [7] require  @ ./loading.jl:2593 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using  @ ./module.jl:137 [inlined]  [11] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [12] top-level scope  @ ~/.julia/packages/SingleCellProjections/30C4U/ext/SingleCellProjectionsPrincipalMomentAnalysisExt.jl:3  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3309  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3151  [18] include_string  @ ./loading.jl:3161 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [20] _start()  @ Base ./client.jl:585 in expression starting at /home/pkgeval/.julia/packages/SingleCellProjections/30C4U/ext/SingleCellProjectionsPrincipalMomentAnalysisExt.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ SingleCellProjections → SingleCellProjectionsPrincipalMomentAnalysisExt │ [Output was shown above] └ ┌ Error: Error during loading of extension SingleCellProjectionsPrincipalMomentAnalysisExt of SingleCellProjections, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 1 package failed to precompile: │ │ SingleCellProjections → SingleCellProjectionsPrincipalMomentAnalysisExt │ Failed to precompile SingleCellProjectionsPrincipalMomentAnalysisExt [d9ac0d4a-038a-5ec2-9e02-eb8394307540] to "/home/pkgeval/.julia/compiled/v1.14/SingleCellProjectionsPrincipalMomentAnalysisExt/jl_1a1nfS" (ProcessExited(1)). │ └ @ Base loading.jl:1781 Test Summary: | Pass Total Time MatrixExpressions.jl | 1233 1233 1m12.7s Estimating sc parameters: 4%|█ | ETA: 0:02:52 Estimating sc parameters: 6%|█▌ | ETA: 0:02:03 Estimating sc parameters: 100%|█████████████████████████| Time: 0:00:07 [ Info: Bandwidth 0.2601508521793458 Estimating sc parameters: 4%|█ | ETA: 0:00:34 Estimating sc parameters: 6%|█▌ | ETA: 0:00:28 Estimating sc parameters: 100%|█████████████████████████| Time: 0:00:01 [ Info: Bandwidth 0.2601508521793458 [ Info: - Removed 12 variables that were not found in Model ┌ Warning: ID "2" is not unique. Use duplicate_var=x, where x is :error, :warn or :ignore to control behavior. └ @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/datamatrix.jl:13 ┌ Warning: ID "1" is not unique. Use duplicate_var=x, where x is :error, :warn or :ignore to control behavior. └ @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/datamatrix.jl:13 ┌ Warning: ID "2" is not unique. Use duplicate_var=x, where x is :error, :warn or :ignore to control behavior. └ @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/datamatrix.jl:13 ┌ Warning: ID "A" is not unique. Use duplicate_obs=x, where x is :error, :warn or :ignore to control behavior. └ @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/datamatrix.jl:13 ┌ Warning: ID "1" is not unique. Use duplicate_obs=x, where x is :error, :warn or :ignore to control behavior. └ @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/datamatrix.jl:13 [ Info: Projecting onto LogTransformModel(scale_factor=10000.0) [ Info: - Removed 29 variables that where not found in Model [ Info: Projecting onto LogTransformModel(scale_factor=10000.0) [ Info: - Removed 29 variables that where not found in Model [ Info: - Removed 29 variables that where not found in Model [ Info: - Removed 29 variables that where not found in Model [ Info: Projecting onto LogTransformModel{Float32}(scale_factor=10000.0) [ Info: - Removed 29 variables that where not found in Model [ Info: Projecting onto LogTransformModel{Float32}(scale_factor=10000.0) [ Info: - Removed 29 variables that where not found in Model [ Info: - Removed 29 variables that where not found in Model [ Info: - Removed 29 variables that where not found in Model [ Info: Projecting onto LogTransformModel(scale_factor=1000.0) [ Info: - Removed 29 variables that where not found in Model [ Info: Projecting onto LogTransformModel(scale_factor=1000.0) [ Info: - Removed 29 variables that where not found in Model [ Info: - Removed 29 variables that where not found in Model [ Info: - Removed 29 variables that where not found in Model [ Info: Projecting onto LogTransformModel{Float32}(scale_factor=1000.0) [ Info: - Removed 29 variables that where not found in Model [ Info: Projecting onto LogTransformModel{Float32}(scale_factor=1000.0) [ Info: - Removed 29 variables that where not found in Model [ Info: - Removed 29 variables that where not found in Model [ Info: - Removed 29 variables that where not found in Model [ Info: Projecting onto TFIDFTransformModel(scale_factor=10000.0) [ Info: - Removed 21 variables that where not found in Model [ Info: Projecting onto TFIDFTransformModel(scale_factor=10000.0) [ Info: - Removed 21 variables that where not found in Model [ Info: - Removed 21 variables that where not found in Model [ Info: - Removed 21 variables that where not found in Model [ Info: Projecting onto TFIDFTransformModel{Float32}(scale_factor=10000.0) [ Info: - Removed 21 variables that where not found in Model [ Info: Projecting onto TFIDFTransformModel{Float32}(scale_factor=10000.0) [ Info: - Removed 21 variables that where not found in Model [ Info: - Removed 21 variables that where not found in Model [ Info: - Removed 21 variables that where not found in Model [ Info: Projecting onto TFIDFTransformModel(scale_factor=1000.0) [ Info: - Removed 21 variables that where not found in Model [ Info: Projecting onto TFIDFTransformModel(scale_factor=1000.0) [ Info: - Removed 21 variables that where not found in Model [ Info: - Removed 21 variables that where not found in Model [ Info: - Removed 21 variables that where not found in Model [ Info: Projecting onto TFIDFTransformModel{Float32}(scale_factor=1000.0) [ Info: - Removed 21 variables that where not found in Model [ Info: Projecting onto TFIDFTransformModel{Float32}(scale_factor=1000.0) [ Info: - Removed 21 variables that where not found in Model [ Info: - Removed 21 variables that where not found in Model [ Info: - Removed 21 variables that where not found in Model [ Info: Projecting onto SCTransformModel(nvar=38, clip=4.42) [ Info: - Removed 12 variables that were not found in Model [ Info: Bandwidth 0.2601508521793458 [ Info: - Removed 12 variables that were not found in Model [ Info: Bandwidth 0.3060409606742096 [ Info: Bandwidth 0.3060409606742096 [ Info: - Removed 18 variables that were not found in Model [ Info: Projecting onto SCTransformModel(nvar=32, clip=4.42) [ Info: - Removed 18 variables that were not found in Model [ Info: Bandwidth 0.3060409606742096 [ Info: - Removed 18 variables that were not found in Model [ Info: Bandwidth 0.3060409606742096 [ Info: - Removed 18 variables that were not found in Model [ Info: Bandwidth 0.2601508521793458 [ Info: - Removed 12 variables that were not found in Model [ Info: Projecting onto SCTransformModel{Float32}(nvar=38, clip=4.42) [ Info: - Removed 12 variables that were not found in Model [ Info: Bandwidth 0.2601508521793458 [ Info: - Removed 12 variables that were not found in Model [ Info: Bandwidth 0.3060409606742096 [ Info: Bandwidth 0.3060409606742096 [ Info: - Removed 18 variables that were not found in Model [ Info: Projecting onto SCTransformModel{Float32}(nvar=32, clip=4.42) [ Info: - Removed 18 variables that were not found in Model [ Info: Bandwidth 0.3060409606742096 [ Info: - Removed 18 variables that were not found in Model [ Info: Bandwidth 0.3060409606742096 [ Info: - Removed 18 variables that were not found in Model [ Info: Projecting onto NormalizationModel(rank=4, ~1+cat(group)+num(value)) [ Info: Projecting onto SCTransformModel(nvar=38, clip=4.42) [ Info: - Removed 12 variables that were not found in Model [ Info: Projecting onto NormalizationModel(rank=1, ~1) [ Info: Projecting onto NormalizationModel(rank=1, ~1) [ Info: Projecting onto NormalizationModel(rank=1, scale=true, ~1) [ Info: Projecting onto NormalizationModel(rank=3, ~1+cat(group)) [ Info: Projecting onto NormalizationModel(rank=3, scale=true, ~1+cat(group)) [ Info: Projecting onto NormalizationModel(rank=2, ~1+num(value)) [ Info: Projecting onto NormalizationModel(rank=2, scale=true, ~1+num(value)) [ Info: Projecting onto NormalizationModel(rank=4, ~1+cat(group)+num(value)) [ Info: Projecting onto NormalizationModel(rank=4, scale=true, ~1+cat(group)+num(value)) [ Info: Projecting onto NormalizationModel(rank=2, ~1+SingleCellProjections.TwoGroupCovariate{String}("group", false, "C", nothing, 0.004830917874396135)) [ Info: Projecting onto NormalizationModel(rank=2, scale=true, ~1+SingleCellProjections.TwoGroupCovariate{String}("group", false, "C", nothing, 0.004830917874396135)) [ Info: Projecting onto NormalizationModel(rank=2, ~1+SingleCellProjections.TwoGroupCovariate{String}("group", false, "B", nothing, 0.005235602094240838)) [ Info: Projecting onto NormalizationModel(rank=3, ~1+cat(external_group (external))) [ Info: Projecting onto NormalizationModel(rank=3, ~1+cat(external_group (external))) [ Info: Projecting onto NormalizationModel(rank=3, ~1+cat(external_group (external))) [ Info: Projecting onto NormalizationModel(rank=2, ~1+num(external_value (external))) [ Info: Projecting onto NormalizationModel(rank=2, ~1+num(external_value (external))) [ Info: Projecting onto NormalizationModel(rank=2, ~1+num(external_value (external))) [ Info: Projecting onto NormalizationModel(rank=2, ~1+SingleCellProjections.TwoGroupCovariate{String}("external_group", true, "C", nothing, 0.004830917874396135)) [ Info: Projecting onto NormalizationModel(rank=2, ~1+SingleCellProjections.TwoGroupCovariate{String}("external_group", true, "C", nothing, 0.004830917874396135)) [ Info: Projecting onto NormalizationModel(rank=2, ~1+SingleCellProjections.TwoGroupCovariate{String}("external_group", true, "C", nothing, 0.004830917874396135)) [ Info: Projecting onto NormalizationModel(rank=2, ~1+SingleCellProjections.TwoGroupCovariate{String}("external_group", true, "B", nothing, 0.005235602094240838)) [ Info: Projecting onto NormalizationModel(rank=2, ~1+SingleCellProjections.TwoGroupCovariate{String}("external_group", true, "B", nothing, 0.005235602094240838)) [ Info: Projecting onto NormalizationModel(rank=2, ~1+SingleCellProjections.TwoGroupCovariate{String}("external_group", true, "B", nothing, 0.005235602094240838)) [ Info: Projecting onto NormalizationModel(rank=3, ~1+cat(external_group (external))) [ Info: Projecting onto NormalizationModel(rank=3, ~1+cat(external_group (external))) [ Info: Projecting onto NormalizationModel(rank=3, ~1+cat(external_group (external))) [ Info: Projecting onto NormalizationModel(rank=2, ~1+num(external_value (external))) [ Info: Projecting onto NormalizationModel(rank=2, ~1+num(external_value (external))) [ Info: Projecting onto NormalizationModel(rank=2, ~1+num(external_value (external))) [ Info: Projecting onto NormalizationModel(rank=2, ~1+SingleCellProjections.TwoGroupCovariate{String}("external_group", true, "C", nothing, 0.004830917874396135)) [ Info: Projecting onto NormalizationModel(rank=2, ~1+SingleCellProjections.TwoGroupCovariate{String}("external_group", true, "C", nothing, 0.004830917874396135)) [ Info: Projecting onto NormalizationModel(rank=2, ~1+SingleCellProjections.TwoGroupCovariate{String}("external_group", true, "C", nothing, 0.004830917874396135)) [ Info: Projecting onto NormalizationModel(rank=2, ~1+SingleCellProjections.TwoGroupCovariate{String}("external_group", true, "B", nothing, 0.005235602094240838)) [ Info: Projecting onto NormalizationModel(rank=2, ~1+SingleCellProjections.TwoGroupCovariate{String}("external_group", true, "B", nothing, 0.005235602094240838)) [ Info: Projecting onto NormalizationModel(rank=2, ~1+SingleCellProjections.TwoGroupCovariate{String}("external_group", true, "B", nothing, 0.005235602094240838)) svd: Error During Test at /home/pkgeval/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:329 Got exception outside of a @test MethodError: no method matching seed2rng(::Int64) The function `seed2rng` exists, but no method is defined for this combination of argument types. Stacktrace: [1] kwcall(::@NamedTuple{nsv::Int64, subspacedims::Int64, niter::Int64, seed::Int64}, ::typeof(SingleCellProjections.implicitsvd), ::Type{Float64}, P::Int64, N::Int64, A::MatrixSum, AT::MatrixSum) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/implicitsvd.jl:21 [2] implicitsvd(A::MatrixSum; kwargs::@Kwargs{nsv::Int64, subspacedims::Int64, niter::Int64, seed::Int64}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/implicitsvd.jl:75 [3] kwcall(::@NamedTuple{nsv::Int64, subspacedims::Int64, niter::Int64, seed::Int64}, ::typeof(SingleCellProjections.implicitsvd), A::MatrixSum) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/implicitsvd.jl:75 [4] svd(data::DataMatrix{MatrixSum, DataFrame, DataFrame}; nsv::Int64, var::Symbol, obs::Symbol, kwargs::@Kwargs{subspacedims::Int64, niter::Int64, seed::Int64}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/reduce.jl:38 [5] kwcall(::@NamedTuple{nsv::Int64, subspacedims::Int64, niter::Int64, seed::Int64}, ::typeof(svd), data::DataMatrix{MatrixSum, DataFrame, DataFrame}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/reduce.jl:37 [6] top-level scope @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:5 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [8] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:330 [inlined] [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [10] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:330 [inlined] [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [12] top-level scope @ ~/.julia/packages/SingleCellProjections/30C4U/test/runtests.jl:33 [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [14] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/runtests.jl:36 [inlined] [15] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [16] top-level scope @ none:6 [17] eval(m::Module, e::Any) @ Core ./boot.jl:489 [18] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [19] _start() @ Base ./client.jl:585 PrincipalMomentAnalysis: Error During Test at /home/pkgeval/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:354 Got exception outside of a @test MethodError: no method matching pma(::DataMatrix{MatrixSum, DataFrame, DataFrame}, ::SimplexGraph{SparseMatrixCSC{Bool, Int64}, Vector{Int64}}; nsv::Int64, subspacedims::Int64, niter::Int64, rng::StableRNGs.LehmerRNG) The function `pma` exists, but no method is defined for this combination of argument types. Closest candidates are: pma(!Matched::AbstractMatrix, ::SimplexGraph; kwargs...) @ PrincipalMomentAnalysis ~/.julia/packages/PrincipalMomentAnalysis/eI8Bo/src/pma.jl:71 pma(!Matched::AbstractMatrix, !Matched::AbstractMatrix{Bool}; kwargs...) @ PrincipalMomentAnalysis ~/.julia/packages/PrincipalMomentAnalysis/eI8Bo/src/pma.jl:84 Stacktrace: [1] top-level scope @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:5 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:355 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [5] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:356 [inlined] [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [7] top-level scope @ ~/.julia/packages/SingleCellProjections/30C4U/test/runtests.jl:33 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [9] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/runtests.jl:36 [inlined] [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [11] top-level scope @ none:6 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [14] _start() @ Base ./client.jl:585 [ Info: Projecting onto SVDModel(nsv=10) [ Info: Projecting onto FilterModel(1:2:49, Colon()) [ Info: Projecting onto FilterModel(1:2:49, Colon()) [ Info: Projecting onto FilterModel(:, external(InvalidIndex())) [ Info: Projecting onto FilterModel(:, external(InvalidIndex())) [ Info: Projecting onto FilterModel(1:2:49, external(InvalidIndex())) [ Info: Projecting onto FilterModel(1:2:49, external(InvalidIndex())) [ Info: Projecting onto FilterModel(:, "group"=>Fix2{typeof(==), String}(==, "A")) [ Info: Projecting onto FilterModel(:, ["group", "value"]=>#26) [ Info: Projecting onto FilterModel(:, #28) [ Info: Projecting onto FilterModel(1:2:49, "group"=>Fix2{typeof(==), String}(==, "A")) [ Info: Projecting onto FilterModel([2, 3, 6, 7, 8, 9, 11, 13, 14, 16 … 34, 38, 39, 41, 42, 43, 45, 46, 48, 49], Colon()) [ Info: Projecting onto FilterModel([2, 3, 6, 7, 8, 9, 11, 13, 14, 16 … 34, 38, 39, 41, 42, 43, 45, 46, 48, 49], Colon()) [ Info: Projecting onto FilterModel([2, 3, 6, 7, 8, 9, 11, 13, 14, 16 … 34, 38, 39, 41, 42, 43, 45, 46, 48, 49], external(InvalidIndex())) [ Info: Projecting onto FilterModel([2, 3, 6, 7, 8, 9, 11, 13, 14, 16 … 34, 38, 39, 41, 42, 43, 45, 46, 48, 49], "group"=>Fix2{typeof(==), String}(==, "A")) [ Info: Projecting onto FilterModel(:, external(["external_group"]=>Fix2{typeof(==), String}(==, "A"))) [ Info: Projecting onto FilterModel(:, external(["external_group"]=>Fix2{typeof(==), String}(==, "A"))) [ Info: Projecting onto FilterModel(:, external(["external_group", "external_value"]=>#32)) [ Info: Projecting onto FilterModel(:, external(["external_group", "external_value"]=>#32)) [ Info: Projecting onto FilterModel(:, external(["external_group", "external_value"]=>#32)) [ Info: Projecting onto FilterModel(:, external(["external_group", "external_value"]=>#32)) [ Info: Projecting onto FilterModel([2, 3, 6, 7, 8, 9, 11, 13, 14, 16 … 34, 38, 39, 41, 42, 43, 45, 46, 48, 49], Colon()) [ Info: Projecting onto FilterModel(:, external(["external_group"]=>Fix2{typeof(==), String}(==, "A"))) [ Info: Projecting onto FilterModel(:, external(["external_group"]=>Fix2{typeof(==), String}(==, "A"))) [ Info: Projecting onto FilterModel(:, external(["external_group", "external_value"]=>#32)) [ Info: Projecting onto FilterModel(:, external(["external_group", "external_value"]=>#32)) [ Info: Projecting onto FilterModel(:, external(["external_group", "external_value"]=>#32)) [ Info: Projecting onto FilterModel(:, external(["external_group", "external_value"]=>#32)) [ Info: Projecting onto FilterModel([2, 3, 6, 7, 8, 9, 11, 13, 14, 16 … 34, 38, 39, 41, 42, 43, 45, 46, 48, 49], Colon()) [ Info: Projecting onto FilterModel(1:2:37, Colon()) [ Info: Projecting onto FilterModel(1:2:37, Colon()) [ Info: Projecting onto FilterModel(:, external(InvalidIndex())) [ Info: Projecting onto FilterModel(:, external(InvalidIndex())) [ Info: Projecting onto FilterModel(1:2:37, external(InvalidIndex())) [ Info: Projecting onto FilterModel(1:2:37, external(InvalidIndex())) [ Info: Projecting onto FilterModel(:, "group"=>Fix2{typeof(==), String}(==, "A")) [ Info: Projecting onto FilterModel(:, ["group", "value"]=>#26) [ Info: Projecting onto FilterModel(:, #28) [ Info: Projecting onto FilterModel(1:2:37, "group"=>Fix2{typeof(==), String}(==, "A")) [ Info: Projecting onto FilterModel([1, 2, 3, 4, 5, 6, 8, 9, 11, 12 … 26, 27, 28, 30, 31, 32, 34, 35, 37, 38], Colon()) [ Info: Projecting onto FilterModel([1, 2, 3, 4, 5, 6, 8, 9, 11, 12 … 26, 27, 28, 30, 31, 32, 34, 35, 37, 38], Colon()) [ Info: Projecting onto FilterModel([1, 2, 3, 4, 5, 6, 8, 9, 11, 12 … 26, 27, 28, 30, 31, 32, 34, 35, 37, 38], external(InvalidIndex())) [ Info: Projecting onto FilterModel([1, 2, 3, 4, 5, 6, 8, 9, 11, 12 … 26, 27, 28, 30, 31, 32, 34, 35, 37, 38], "group"=>Fix2{typeof(==), String}(==, "A")) [ Info: Projecting onto FilterModel(:, external(["external_group"]=>Fix2{typeof(==), String}(==, "A"))) [ Info: Projecting onto FilterModel(:, external(["external_group"]=>Fix2{typeof(==), String}(==, "A"))) [ Info: Projecting onto FilterModel(:, external(["external_group", "external_value"]=>#32)) [ Info: Projecting onto FilterModel(:, external(["external_group", "external_value"]=>#32)) [ Info: Projecting onto FilterModel(:, external(["external_group", "external_value"]=>#32)) [ Info: Projecting onto FilterModel(:, external(["external_group", "external_value"]=>#32)) [ Info: Projecting onto FilterModel([1, 2, 3, 4, 5, 6, 8, 9, 11, 12 … 26, 27, 28, 30, 31, 32, 34, 35, 37, 38], Colon()) [ Info: Projecting onto FilterModel(:, external(["external_group"]=>Fix2{typeof(==), String}(==, "A"))) [ Info: Projecting onto FilterModel(:, external(["external_group"]=>Fix2{typeof(==), String}(==, "A"))) [ Info: Projecting onto FilterModel(:, external(["external_group", "external_value"]=>#32)) [ Info: Projecting onto FilterModel(:, external(["external_group", "external_value"]=>#32)) [ Info: Projecting onto FilterModel(:, external(["external_group", "external_value"]=>#32)) [ Info: Projecting onto FilterModel(:, external(["external_group", "external_value"]=>#32)) [ Info: Projecting onto FilterModel([1, 2, 3, 4, 5, 6, 8, 9, 11, 12 … 26, 27, 28, 30, 31, 32, 34, 35, 37, 38], Colon()) [ Info: Projecting onto FilterModel(1:2:37, Colon()) [ Info: Projecting onto FilterModel(1:2:37, Colon()) [ Info: Projecting onto FilterModel(:, external(InvalidIndex())) [ Info: Projecting onto FilterModel(:, external(InvalidIndex())) [ Info: Projecting onto FilterModel(1:2:37, external(InvalidIndex())) [ Info: Projecting onto FilterModel(1:2:37, external(InvalidIndex())) [ Info: Projecting onto FilterModel(:, "group"=>Fix2{typeof(==), String}(==, "A")) [ Info: Projecting onto FilterModel(:, ["group", "value"]=>#26) [ Info: Projecting onto FilterModel(:, #28) [ Info: Projecting onto FilterModel(1:2:37, "group"=>Fix2{typeof(==), String}(==, "A")) [ Info: Projecting onto FilterModel([1, 2, 3, 4, 5, 6, 8, 9, 11, 12 … 26, 27, 28, 30, 31, 32, 34, 35, 37, 38], Colon()) [ Info: Projecting onto FilterModel([1, 2, 3, 4, 5, 6, 8, 9, 11, 12 … 26, 27, 28, 30, 31, 32, 34, 35, 37, 38], Colon()) [ Info: Projecting onto FilterModel([1, 2, 3, 4, 5, 6, 8, 9, 11, 12 … 26, 27, 28, 30, 31, 32, 34, 35, 37, 38], external(InvalidIndex())) [ Info: Projecting onto FilterModel([1, 2, 3, 4, 5, 6, 8, 9, 11, 12 … 26, 27, 28, 30, 31, 32, 34, 35, 37, 38], "group"=>Fix2{typeof(==), String}(==, "A")) [ Info: Projecting onto FilterModel(:, external(["external_group"]=>Fix2{typeof(==), String}(==, "A"))) [ Info: Projecting onto FilterModel(:, external(["external_group"]=>Fix2{typeof(==), String}(==, "A"))) [ Info: Projecting onto FilterModel(:, external(["external_group", "external_value"]=>#32)) [ Info: Projecting onto FilterModel(:, external(["external_group", "external_value"]=>#32)) [ Info: Projecting onto FilterModel(:, external(["external_group", "external_value"]=>#32)) [ Info: Projecting onto FilterModel(:, external(["external_group", "external_value"]=>#32)) [ Info: Projecting onto FilterModel([1, 2, 3, 4, 5, 6, 8, 9, 11, 12 … 26, 27, 28, 30, 31, 32, 34, 35, 37, 38], Colon()) [ Info: Projecting onto FilterModel(:, external(["external_group"]=>Fix2{typeof(==), String}(==, "A"))) [ Info: Projecting onto FilterModel(:, external(["external_group"]=>Fix2{typeof(==), String}(==, "A"))) [ Info: Projecting onto FilterModel(:, external(["external_group", "external_value"]=>#32)) [ Info: Projecting onto FilterModel(:, external(["external_group", "external_value"]=>#32)) [ Info: Projecting onto FilterModel(:, external(["external_group", "external_value"]=>#32)) [ Info: Projecting onto FilterModel(:, external(["external_group", "external_value"]=>#32)) [ Info: Projecting onto FilterModel([1, 2, 3, 4, 5, 6, 8, 9, 11, 12 … 26, 27, 28, 30, 31, 32, 34, 35, 37, 38], Colon()) force layout seed=1: Error During Test at /home/pkgeval/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:571 Got exception outside of a @test MethodError: no method matching seed2rng(::Int64) The function `seed2rng` exists, but no method is defined for this combination of argument types. Stacktrace: [1] kwcall(::@NamedTuple{seed::Int64}, ::typeof(force_layout), ::Val{3}, adj::SparseMatrixCSC{Bool, Int64}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/force_layout.jl:108 [2] force_layout(adj::SparseMatrixCSC{Bool, Int64}; ndim::Int64, kwargs::@Kwargs{seed::Int64}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/force_layout.jl:158 [3] kwcall(::@NamedTuple{ndim::Int64, seed::Int64}, ::typeof(force_layout), adj::SparseMatrixCSC{Bool, Int64}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/force_layout.jl:158 [4] force_layout(data::DataMatrix{SVD{Float64, Float64, Matrix{Float64}, Vector{Float64}}, DataFrame, DataFrame}; ndim::Int64, k::Int64, adj::Nothing, kprojection::Int64, obs::Symbol, adj_out::Nothing, kwargs::@Kwargs{seed::Int64}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/reduce.jl:156 [5] kwcall(::@NamedTuple{ndim::Int64, k::Int64, seed::Int64}, ::typeof(force_layout), data::DataMatrix{SVD{Float64, Float64, Matrix{Float64}, Vector{Float64}}, DataFrame, DataFrame}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/reduce.jl:149 [6] top-level scope @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:5 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [8] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:571 [inlined] [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2076 [inlined] [10] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:572 [inlined] [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [12] top-level scope @ ~/.julia/packages/SingleCellProjections/30C4U/test/runtests.jl:33 [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [14] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/runtests.jl:36 [inlined] [15] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [16] top-level scope @ none:6 [17] eval(m::Module, e::Any) @ Core ./boot.jl:489 [18] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [19] _start() @ Base ./client.jl:585 force layout seed=2: Error During Test at /home/pkgeval/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:571 Got exception outside of a @test MethodError: no method matching seed2rng(::Int64) The function `seed2rng` exists, but no method is defined for this combination of argument types. Stacktrace: [1] kwcall(::@NamedTuple{seed::Int64}, ::typeof(force_layout), ::Val{3}, adj::SparseMatrixCSC{Bool, Int64}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/force_layout.jl:108 [2] force_layout(adj::SparseMatrixCSC{Bool, Int64}; ndim::Int64, kwargs::@Kwargs{seed::Int64}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/force_layout.jl:158 [3] kwcall(::@NamedTuple{ndim::Int64, seed::Int64}, ::typeof(force_layout), adj::SparseMatrixCSC{Bool, Int64}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/force_layout.jl:158 [4] force_layout(data::DataMatrix{SVD{Float64, Float64, Matrix{Float64}, Vector{Float64}}, DataFrame, DataFrame}; ndim::Int64, k::Int64, adj::Nothing, kprojection::Int64, obs::Symbol, adj_out::Nothing, kwargs::@Kwargs{seed::Int64}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/reduce.jl:156 [5] kwcall(::@NamedTuple{ndim::Int64, k::Int64, seed::Int64}, ::typeof(force_layout), data::DataMatrix{SVD{Float64, Float64, Matrix{Float64}, Vector{Float64}}, DataFrame, DataFrame}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/reduce.jl:149 [6] top-level scope @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:5 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [8] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:571 [inlined] [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2076 [inlined] [10] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:572 [inlined] [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [12] top-level scope @ ~/.julia/packages/SingleCellProjections/30C4U/test/runtests.jl:33 [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [14] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/runtests.jl:36 [inlined] [15] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [16] top-level scope @ none:6 [17] eval(m::Module, e::Any) @ Core ./boot.jl:489 [18] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [19] _start() @ Base ./client.jl:585 force layout seed=3: Error During Test at /home/pkgeval/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:571 Got exception outside of a @test MethodError: no method matching seed2rng(::Int64) The function `seed2rng` exists, but no method is defined for this combination of argument types. Stacktrace: [1] kwcall(::@NamedTuple{seed::Int64}, ::typeof(force_layout), ::Val{3}, adj::SparseMatrixCSC{Bool, Int64}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/force_layout.jl:108 [2] force_layout(adj::SparseMatrixCSC{Bool, Int64}; ndim::Int64, kwargs::@Kwargs{seed::Int64}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/force_layout.jl:158 [3] kwcall(::@NamedTuple{ndim::Int64, seed::Int64}, ::typeof(force_layout), adj::SparseMatrixCSC{Bool, Int64}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/force_layout.jl:158 [4] force_layout(data::DataMatrix{SVD{Float64, Float64, Matrix{Float64}, Vector{Float64}}, DataFrame, DataFrame}; ndim::Int64, k::Int64, adj::Nothing, kprojection::Int64, obs::Symbol, adj_out::Nothing, kwargs::@Kwargs{seed::Int64}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/reduce.jl:156 [5] kwcall(::@NamedTuple{ndim::Int64, k::Int64, seed::Int64}, ::typeof(force_layout), data::DataMatrix{SVD{Float64, Float64, Matrix{Float64}, Vector{Float64}}, DataFrame, DataFrame}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/reduce.jl:149 [6] top-level scope @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:5 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [8] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:571 [inlined] [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2076 [inlined] [10] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:572 [inlined] [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [12] top-level scope @ ~/.julia/packages/SingleCellProjections/30C4U/test/runtests.jl:33 [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [14] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/runtests.jl:36 [inlined] [15] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [16] top-level scope @ none:6 [17] eval(m::Module, e::Any) @ Core ./boot.jl:489 [18] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [19] _start() @ Base ./client.jl:585 force layout seed=4: Error During Test at /home/pkgeval/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:571 Got exception outside of a @test MethodError: no method matching seed2rng(::Int64) The function `seed2rng` exists, but no method is defined for this combination of argument types. Stacktrace: [1] kwcall(::@NamedTuple{seed::Int64}, ::typeof(force_layout), ::Val{3}, adj::SparseMatrixCSC{Bool, Int64}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/force_layout.jl:108 [2] force_layout(adj::SparseMatrixCSC{Bool, Int64}; ndim::Int64, kwargs::@Kwargs{seed::Int64}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/force_layout.jl:158 [3] kwcall(::@NamedTuple{ndim::Int64, seed::Int64}, ::typeof(force_layout), adj::SparseMatrixCSC{Bool, Int64}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/force_layout.jl:158 [4] force_layout(data::DataMatrix{SVD{Float64, Float64, Matrix{Float64}, Vector{Float64}}, DataFrame, DataFrame}; ndim::Int64, k::Int64, adj::Nothing, kprojection::Int64, obs::Symbol, adj_out::Nothing, kwargs::@Kwargs{seed::Int64}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/reduce.jl:156 [5] kwcall(::@NamedTuple{ndim::Int64, k::Int64, seed::Int64}, ::typeof(force_layout), data::DataMatrix{SVD{Float64, Float64, Matrix{Float64}, Vector{Float64}}, DataFrame, DataFrame}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/reduce.jl:149 [6] top-level scope @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:5 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [8] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:571 [inlined] [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2076 [inlined] [10] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:572 [inlined] [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [12] top-level scope @ ~/.julia/packages/SingleCellProjections/30C4U/test/runtests.jl:33 [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [14] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/runtests.jl:36 [inlined] [15] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [16] top-level scope @ none:6 [17] eval(m::Module, e::Any) @ Core ./boot.jl:489 [18] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [19] _start() @ Base ./client.jl:585 force layout seed=5: Error During Test at /home/pkgeval/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:571 Got exception outside of a @test MethodError: no method matching seed2rng(::Int64) The function `seed2rng` exists, but no method is defined for this combination of argument types. Stacktrace: [1] kwcall(::@NamedTuple{seed::Int64}, ::typeof(force_layout), ::Val{3}, adj::SparseMatrixCSC{Bool, Int64}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/force_layout.jl:108 [2] force_layout(adj::SparseMatrixCSC{Bool, Int64}; ndim::Int64, kwargs::@Kwargs{seed::Int64}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/force_layout.jl:158 [3] kwcall(::@NamedTuple{ndim::Int64, seed::Int64}, ::typeof(force_layout), adj::SparseMatrixCSC{Bool, Int64}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/force_layout.jl:158 [4] force_layout(data::DataMatrix{SVD{Float64, Float64, Matrix{Float64}, Vector{Float64}}, DataFrame, DataFrame}; ndim::Int64, k::Int64, adj::Nothing, kprojection::Int64, obs::Symbol, adj_out::Nothing, kwargs::@Kwargs{seed::Int64}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/reduce.jl:156 [5] kwcall(::@NamedTuple{ndim::Int64, k::Int64, seed::Int64}, ::typeof(force_layout), data::DataMatrix{SVD{Float64, Float64, Matrix{Float64}, Vector{Float64}}, DataFrame, DataFrame}) @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/reduce.jl:149 [6] top-level scope @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:5 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [8] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:571 [inlined] [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2076 [inlined] [10] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:572 [inlined] [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [12] top-level scope @ ~/.julia/packages/SingleCellProjections/30C4U/test/runtests.jl:33 [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [14] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/runtests.jl:36 [inlined] [15] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [16] top-level scope @ none:6 [17] eval(m::Module, e::Any) @ Core ./boot.jl:489 [18] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [19] _start() @ Base ./client.jl:585 UMAP: Error During Test at /home/pkgeval/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:584 Got exception outside of a @test MethodError: no method matching UMAP_(::DataMatrix{SVD{Float64, Float64, Matrix{Float64}, Vector{Float64}}, DataFrame, DataFrame}, ::Int64) The type `UMAP_` exists, but no method is defined for this combination of argument types when trying to construct it. Closest candidates are: UMAP_(!Matched::AbstractMatrix{S}, ::Integer; n_neighbors, metric, n_epochs, learning_rate, init, min_dist, spread, set_operation_ratio, local_connectivity, repulsion_strength, neg_sample_rate, a, b) where S<:Real @ UMAP ~/.julia/packages/UMAP/KjtQ5/src/umap_.jl:77 UMAP_(!Matched::M, !Matched::N, !Matched::D, !Matched::K, !Matched::I) where {S<:Real, M<:AbstractMatrix{S}, N<:AbstractMatrix{S}, D<:AbstractMatrix{S}, K<:(AbstractMatrix{<:Integer}), I<:AbstractMatrix{S}} @ UMAP ~/.julia/packages/UMAP/KjtQ5/src/umap_.jl:23 UMAP_(!Matched::AbstractMatrix{S}; ...) where S<:Real @ UMAP ~/.julia/packages/UMAP/KjtQ5/src/umap_.jl:77 Stacktrace: [1] umap(::DataMatrix{SVD{Float64, Float64, Matrix{Float64}, Vector{Float64}}, DataFrame, DataFrame}, ::Vararg{Any}; kwargs::@Kwargs{}) @ UMAP ~/.julia/packages/UMAP/KjtQ5/src/umap_.jl:45 [2] umap(::DataMatrix{SVD{Float64, Float64, Matrix{Float64}, Vector{Float64}}, DataFrame, DataFrame}, ::Vararg{Any}) @ UMAP ~/.julia/packages/UMAP/KjtQ5/src/umap_.jl:43 [3] top-level scope @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:5 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [5] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:585 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [7] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:585 [inlined] [8] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [9] top-level scope @ ~/.julia/packages/SingleCellProjections/30C4U/test/runtests.jl:33 [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [11] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/runtests.jl:36 [inlined] [12] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [13] top-level scope @ none:6 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [16] _start() @ Base ./client.jl:585 t-SNE: Error During Test at /home/pkgeval/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:600 Got exception outside of a @test MethodError: no method matching tsne(::DataMatrix{SVD{Float64, Float64, Matrix{Float64}, Vector{Float64}}, DataFrame, DataFrame}, ::Int64) The function `tsne` exists, but no method is defined for this combination of argument types. Closest candidates are: tsne(!Matched::Union{AbstractMatrix, AbstractVector}, ::Integer; ...) @ TSne ~/.julia/packages/TSne/NPQ4U/src/TSne.jl:157 tsne(!Matched::Union{AbstractMatrix, AbstractVector}, ::Integer, !Matched::Integer; ...) @ TSne ~/.julia/packages/TSne/NPQ4U/src/TSne.jl:157 tsne(!Matched::Union{AbstractMatrix, AbstractVector}, ::Integer, !Matched::Integer, !Matched::Integer; ...) @ TSne ~/.julia/packages/TSne/NPQ4U/src/TSne.jl:157 ... Stacktrace: [1] top-level scope @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:5 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:601 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [5] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/basic.jl:601 [inlined] [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [7] top-level scope @ ~/.julia/packages/SingleCellProjections/30C4U/test/runtests.jl:33 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [9] macro expansion @ ~/.julia/packages/SingleCellProjections/30C4U/test/runtests.jl:36 [inlined] [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [11] top-level scope @ none:6 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [14] _start() @ Base ./client.jl:585 [ Info: Projecting onto VarCountsFractionModel(subset_size=0, total_size=50, col="C") [ Info: Projecting onto VarCountsFractionModel(subset_size=13, total_size=50, col="A") [ Info: Projecting onto VarCountsFractionModel(subset_size=9, total_size=13, col="B") [ Info: Projecting onto VarCountsFractionModel(subset_size=0, total_size=50, col="C") [ Info: Projecting onto VarCountsFractionModel(subset_size=9, total_size=13, col="C") [ Info: Projecting onto VarCountsFractionModel(subset_size=9, total_size=13, col="A") [ Info: Projecting onto VarCountsFractionModel(subset_size=9, total_size=13, col="B") [ Info: Projecting onto VarCountsFractionModel(subset_size=9, total_size=13, col="C") [ Info: Projecting onto VarCountsFractionModel(subset_size=9, total_size=13, col="C") [ Info: Projecting onto VarCountsFractionModel(subset_size=9, total_size=13, col="A") [ Info: Projecting onto VarCountsFractionModel(subset_size=9, total_size=13, col="B") [ Info: Projecting onto VarCountsFractionModel(subset_size=9, total_size=13, col="C") [ Info: Projecting onto VarCountsSumModel(size=0, col="C") [ Info: Projecting onto VarCountsSumModel(size=13, col="A") [ Info: Projecting onto VarCountsSumModel(f=!iszero, size=13, col="B") [ Info: Projecting onto VarCountsSumModel(size=0, col="C") [ Info: Projecting onto VarCountsSumModel(f=!iszero, size=13, col="B") [ Info: Projecting onto VarCountsSumModel(size=13, col="A") [ Info: Projecting onto VarCountsSumModel(f=!iszero, size=13, col="B") [ Info: Projecting onto VarCountsSumModel(f=!iszero, size=13, col="B") [ Info: Projecting onto VarCountsSumModel(size=13, col="A") [ Info: Projecting onto VarCountsSumModel(f=!iszero, size=13, col="B") [ Info: Projecting onto PseudoBulkModel(group) [ Info: Projecting onto PseudoBulkModel(group2) [ Info: Projecting onto PseudoBulkModel(group3) [ Info: Projecting onto PseudoBulkModel(twogroup) [ Info: Projecting onto PseudoBulkModel(group, group3) [ Info: Projecting onto PseudoBulkModel(group, group2) [ Info: Projecting onto PseudoBulkModel(group, twogroup) [ Info: Projecting onto PseudoBulkModel(group) [ Info: Projecting onto PseudoBulkModel(group2) [ Info: Projecting onto PseudoBulkModel(group3) [ Info: Projecting onto PseudoBulkModel(twogroup) [ Info: Projecting onto PseudoBulkModel(group, group3) [ Info: Projecting onto PseudoBulkModel(group, group2) [ Info: Projecting onto PseudoBulkModel(group, twogroup) ┌ Warning: ID "CD34" is not unique. Use duplicate_var=x, where x is :error, :warn or :ignore to control behavior. └ @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/datamatrix.jl:13 ┌ Warning: ID "CD34" is not unique. Use duplicate_var=x, where x is :error, :warn or :ignore to control behavior. └ @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/datamatrix.jl:13 ┌ Warning: ID "CD34" is not unique. Use duplicate_var=x, where x is :error, :warn or :ignore to control behavior. └ @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/datamatrix.jl:13 ┌ Warning: ID "CD34" is not unique. Use duplicate_var=x, where x is :error, :warn or :ignore to control behavior. └ @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/datamatrix.jl:13 [ Info: - Removed 30 variables that where not found in Model [ Info: Projecting onto LogTransformModel(scale_factor=10000.0) [ Info: - Removed 30 variables that where not found in Model [ Info: Projecting onto LogTransformModel(scale_factor=10000.0) [ Info: - Removed 30 variables that where not found in Model [ Info: Projecting onto TFIDFTransformModel(scale_factor=10000.0) [ Info: - Removed 30 variables that where not found in Model [ Info: Projecting onto TFIDFTransformModel(scale_factor=10000.0) [ Info: Bandwidth 0.4913850637136736 [ Info: - Removed 55 variables that were not found in Model [ Info: Bandwidth 0.4913850637136736 [ Info: - Removed 25 variables that were not found in Model [ Info: Projecting onto SCTransformModel(nvar=25, clip=2.58) [ Info: - Removed 55 variables that were not found in Model [ Info: Projecting onto SCTransformModel(nvar=25, clip=2.58) [ Info: - Removed 25 variables that were not found in Model [ Info: Projecting onto ObsAnnotationModel(GPR22) [ Info: Projecting onto ObsAnnotationModel(C3orf79, CEBPA, CST3, CFAP298, CDY1) [ Info: C3orf79, CEBPA, CST3 and CDY1 missing in DataMatrix. [ Info: Projecting onto SCTransformModel(nvar=38, clip=4.42) [ Info: - Removed 12 variables that were not found in Model [ Info: Projecting onto NormalizationModel(rank=4, ~1+cat(group)+num(value)) [ Info: Projecting onto SVDModel(nsv=10) [ Info: Projecting onto NearestNeighborModel(base="force_layout", k=10) [ Info: Projecting onto NormalizationModel(rank=4, ~1+cat(group)+num(value)) [ Info: - Removed 12 variables that where not found in Model [ Info: Projecting onto SCTransformModel(nvar=38, clip=4.42) [ Info: - Removed 12 variables that were not found in Model [ Info: Projecting onto NormalizationModel(rank=4, ~1+cat(group)+num(value)) [ Info: Projecting onto SVDModel(nsv=10) [ Info: Projecting onto NearestNeighborModel(base="force_layout", k=10) [ Info: Projecting onto LogTransformModel(scale_factor=10000.0) [ Info: Projecting onto TFIDFTransformModel(scale_factor=10000.0) [ Info: Projecting onto SCTransformModel(nvar=38, clip=4.42) [ Info: - Removed 12 variables that were not found in Model [ Info: Projecting onto NormalizationModel(rank=1, ~1) [ Info: Projecting onto NormalizationModel(rank=1, scale=true, ~1) [ Info: Projecting onto NormalizationModel(rank=4, ~1+cat(group)+num(value)) [ Info: Projecting onto NormalizationModel(rank=4, scale=true, ~1+cat(group)+num(value)) [ Info: Projecting onto NormalizationModel(rank=1, ~num(value)) [ Info: Projecting onto NormalizationModel(rank=1, ~1) [ Info: Projecting onto FilterModel(50:-3:2, Colon()) [ Info: Projecting onto SCTransformModel(nvar=38, clip=4.42) [ Info: - Removed 12 variables that were not found in Model [ Info: Projecting onto NormalizationModel(rank=4, ~1+cat(group)+num(value)) [ Info: Projecting onto SVDModel(nsv=10) [ Info: Projecting onto NearestNeighborModel(base="force_layout", k=10) [ Info: Projecting onto LogTransformModel(scale_factor=10000.0) [ Info: - Reordered variables to match Model [ Info: Projecting onto TFIDFTransformModel(scale_factor=10000.0) [ Info: - Reordered variables to match Model [ Info: Projecting onto SCTransformModel(nvar=38, clip=4.42) [ Info: - Removed 12 variables that were not found in Model [ Info: Projecting onto NormalizationModel(rank=1, ~1) [ Info: Projecting onto NormalizationModel(rank=1, scale=true, ~1) [ Info: Projecting onto NormalizationModel(rank=4, ~1+cat(group)+num(value)) [ Info: Projecting onto NormalizationModel(rank=4, scale=true, ~1+cat(group)+num(value)) [ Info: Projecting onto NormalizationModel(rank=1, ~num(value)) [ Info: Projecting onto NormalizationModel(rank=1, ~1) [ Info: - Reordered variables to match Model [ Info: Projecting onto FilterModel(50:-3:2, Colon()) [ Info: - Reordered variables to match Model [ Info: Projecting onto SCTransformModel(nvar=38, clip=4.42) [ Info: - Removed 12 variables that were not found in Model [ Info: Projecting onto NormalizationModel(rank=4, ~1+cat(group)+num(value)) [ Info: Projecting onto SVDModel(nsv=10) [ Info: Projecting onto NearestNeighborModel(base="force_layout", k=10) [ Info: Projecting onto LogTransformModel(scale_factor=10000.0) [ Info: - Removed 13 variables that where not found in Model [ Info: - Skipped 13 missing variables [ Info: Projecting onto TFIDFTransformModel(scale_factor=10000.0) [ Info: - Removed 13 variables that where not found in Model [ Info: - Skipped 13 missing variables [ Info: Projecting onto SCTransformModel(nvar=38, clip=4.42) [ Info: - Removed 21 variables that were not found in Model [ Info: - Skipped 9 missing variables [ Info: Projecting onto NormalizationModel(rank=1, ~1) [ Info: - Reconstructed 9 missing variables [ Info: Projecting onto NormalizationModel(rank=1, scale=true, ~1) [ Info: - Reconstructed 9 missing variables [ Info: Projecting onto NormalizationModel(rank=4, ~1+cat(group)+num(value)) [ Info: - Reconstructed 9 missing variables [ Info: Projecting onto NormalizationModel(rank=4, scale=true, ~1+cat(group)+num(value)) [ Info: - Reconstructed 9 missing variables [ Info: Projecting onto NormalizationModel(rank=1, ~num(value)) [ Info: Projecting onto NormalizationModel(rank=1, ~1) [ Info: - Removed 13 variables that where not found in Model [ Info: - Reconstructed 13 missing variables [ Info: Projecting onto FilterModel(50:-3:2, Colon()) [ Info: - Removed 13 variables that where not found in Model [ Info: - Skipped 4 missing variables [ Info: - Reordered variables to match Model [ Info: Projecting onto SCTransformModel(nvar=38, clip=4.42) [ Info: - Removed 21 variables that were not found in Model [ Info: - Skipped 9 missing variables [ Info: Projecting onto NormalizationModel(rank=4, ~1+cat(group)+num(value)) [ Info: - Reconstructed 9 missing variables [ Info: Projecting onto SVDModel(nsv=10) [ Info: Projecting onto NearestNeighborModel(base="force_layout", k=10) [ Info: Projecting onto LogTransformModel(scale_factor=10000.0) [ Info: - Removed 13 variables that where not found in Model [ Info: - Skipped 13 missing variables [ Info: - Reordered variables to match Model [ Info: Projecting onto TFIDFTransformModel(scale_factor=10000.0) [ Info: - Removed 13 variables that where not found in Model [ Info: - Skipped 13 missing variables [ Info: - Reordered variables to match Model [ Info: Projecting onto SCTransformModel(nvar=38, clip=4.42) [ Info: - Removed 21 variables that were not found in Model [ Info: - Skipped 9 missing variables [ Info: - Reordered variables to match Model [ Info: Projecting onto NormalizationModel(rank=1, ~1) [ Info: - Reconstructed 9 missing variables [ Info: Projecting onto NormalizationModel(rank=1, scale=true, ~1) [ Info: - Reconstructed 9 missing variables [ Info: Projecting onto NormalizationModel(rank=4, ~1+cat(group)+num(value)) [ Info: - Reconstructed 9 missing variables [ Info: Projecting onto NormalizationModel(rank=4, scale=true, ~1+cat(group)+num(value)) [ Info: - Reconstructed 9 missing variables [ Info: Projecting onto NormalizationModel(rank=1, ~num(value)) [ Info: Projecting onto NormalizationModel(rank=1, ~1) [ Info: - Removed 13 variables that where not found in Model [ Info: - Reconstructed 13 missing variables [ Info: - Reordered variables to match Model [ Info: Projecting onto FilterModel(50:-3:2, Colon()) [ Info: - Removed 13 variables that where not found in Model [ Info: - Skipped 4 missing variables [ Info: - Reordered variables to match Model [ Info: Projecting onto SCTransformModel(nvar=38, clip=4.42) [ Info: - Removed 21 variables that were not found in Model [ Info: - Skipped 9 missing variables [ Info: - Reordered variables to match Model [ Info: Projecting onto NormalizationModel(rank=4, ~1+cat(group)+num(value)) [ Info: - Reconstructed 9 missing variables [ Info: Projecting onto SVDModel(nsv=10) [ Info: Projecting onto NearestNeighborModel(base="force_layout", k=10) [ Info: Projecting onto LogTransformModel(scale_factor=10000.0) [ Info: - Skipped 10 missing variables [ Info: Projecting onto TFIDFTransformModel(scale_factor=10000.0) [ Info: - Skipped 10 missing variables [ Info: Projecting onto SCTransformModel(nvar=38, clip=4.42) [ Info: - Removed 9 variables that were not found in Model [ Info: - Skipped 7 missing variables [ Info: Projecting onto NormalizationModel(rank=1, ~1) [ Info: - Reconstructed 7 missing variables [ Info: Projecting onto NormalizationModel(rank=1, scale=true, ~1) [ Info: - Reconstructed 7 missing variables [ Info: Projecting onto NormalizationModel(rank=4, ~1+cat(group)+num(value)) [ Info: - Reconstructed 7 missing variables [ Info: Projecting onto NormalizationModel(rank=4, scale=true, ~1+cat(group)+num(value)) [ Info: - Reconstructed 7 missing variables [ Info: Projecting onto NormalizationModel(rank=1, ~num(value)) [ Info: Projecting onto NormalizationModel(rank=1, ~1) [ Info: - Reconstructed 10 missing variables [ Info: Projecting onto FilterModel(50:-3:2, Colon()) [ Info: - Skipped 3 missing variables [ Info: - Reordered variables to match Model [ Info: Projecting onto SCTransformModel(nvar=38, clip=4.42) [ Info: - Removed 9 variables that were not found in Model [ Info: - Skipped 7 missing variables [ Info: Projecting onto NormalizationModel(rank=4, ~1+cat(group)+num(value)) [ Info: - Reconstructed 7 missing variables [ Info: Projecting onto SVDModel(nsv=10) [ Info: Projecting onto NearestNeighborModel(base="force_layout", k=10) [ Info: Projecting onto LogTransformModel(scale_factor=10000.0) [ Info: - Skipped 10 missing variables [ Info: - Reordered variables to match Model [ Info: Projecting onto TFIDFTransformModel(scale_factor=10000.0) [ Info: - Skipped 10 missing variables [ Info: - Reordered variables to match Model [ Info: Projecting onto SCTransformModel(nvar=38, clip=4.42) [ Info: - Removed 9 variables that were not found in Model [ Info: - Skipped 7 missing variables [ Info: - Reordered variables to match Model [ Info: Projecting onto NormalizationModel(rank=1, ~1) [ Info: - Reconstructed 7 missing variables [ Info: Projecting onto NormalizationModel(rank=1, scale=true, ~1) [ Info: - Reconstructed 7 missing variables [ Info: Projecting onto NormalizationModel(rank=4, ~1+cat(group)+num(value)) [ Info: - Reconstructed 7 missing variables [ Info: Projecting onto NormalizationModel(rank=4, scale=true, ~1+cat(group)+num(value)) [ Info: - Reconstructed 7 missing variables [ Info: Projecting onto NormalizationModel(rank=1, ~num(value)) [ Info: Projecting onto NormalizationModel(rank=1, ~1) [ Info: - Reconstructed 10 missing variables [ Info: - Reordered variables to match Model [ Info: Projecting onto FilterModel(50:-3:2, Colon()) [ Info: - Skipped 3 missing variables [ Info: - Reordered variables to match Model [ Info: Projecting onto SCTransformModel(nvar=38, clip=4.42) [ Info: - Removed 9 variables that were not found in Model [ Info: - Skipped 7 missing variables [ Info: - Reordered variables to match Model [ Info: Projecting onto NormalizationModel(rank=4, ~1+cat(group)+num(value)) [ Info: - Reconstructed 7 missing variables [ Info: Projecting onto SVDModel(nsv=10) [ Info: Projecting onto NearestNeighborModel(base="force_layout", k=10) [ Info: Projecting onto LogTransformModel(scale_factor=10000.0) [ Info: - Removed 11 variables that where not found in Model [ Info: - Skipped 21 missing variables [ Info: Projecting onto TFIDFTransformModel(scale_factor=10000.0) [ Info: - Removed 11 variables that where not found in Model [ Info: - Skipped 21 missing variables [ Info: Projecting onto SCTransformModel(nvar=38, clip=4.42) [ Info: - Removed 16 variables that were not found in Model [ Info: - Skipped 14 missing variables [ Info: Projecting onto NormalizationModel(rank=1, ~1) [ Info: - Reconstructed 14 missing variables [ Info: Projecting onto NormalizationModel(rank=1, scale=true, ~1) [ Info: - Reconstructed 14 missing variables [ Info: Projecting onto NormalizationModel(rank=4, ~1+cat(group)+num(value)) [ Info: - Reconstructed 14 missing variables [ Info: Projecting onto NormalizationModel(rank=4, scale=true, ~1+cat(group)+num(value)) [ Info: - Reconstructed 14 missing variables [ Info: Projecting onto NormalizationModel(rank=1, ~num(value)) [ Info: Projecting onto NormalizationModel(rank=1, ~1) [ Info: - Removed 11 variables that where not found in Model [ Info: - Reconstructed 21 missing variables [ Info: Projecting onto FilterModel(50:-3:2, Colon()) [ Info: - Removed 11 variables that where not found in Model [ Info: - Skipped 6 missing variables [ Info: - Reordered variables to match Model [ Info: Projecting onto SCTransformModel(nvar=38, clip=4.42) [ Info: - Removed 16 variables that were not found in Model [ Info: - Skipped 14 missing variables [ Info: Projecting onto NormalizationModel(rank=4, ~1+cat(group)+num(value)) [ Info: - Reconstructed 14 missing variables [ Info: Projecting onto SVDModel(nsv=10) [ Info: Projecting onto NearestNeighborModel(base="force_layout", k=10) [ Info: Projecting onto LogTransformModel(scale_factor=10000.0) [ Info: - Removed 11 variables that where not found in Model [ Info: - Skipped 21 missing variables [ Info: - Reordered variables to match Model [ Info: Projecting onto TFIDFTransformModel(scale_factor=10000.0) [ Info: - Removed 11 variables that where not found in Model [ Info: - Skipped 21 missing variables [ Info: - Reordered variables to match Model [ Info: Projecting onto SCTransformModel(nvar=38, clip=4.42) [ Info: - Removed 16 variables that were not found in Model [ Info: - Skipped 14 missing variables [ Info: - Reordered variables to match Model [ Info: Projecting onto NormalizationModel(rank=1, ~1) [ Info: - Reconstructed 14 missing variables [ Info: Projecting onto NormalizationModel(rank=1, scale=true, ~1) [ Info: - Reconstructed 14 missing variables [ Info: Projecting onto NormalizationModel(rank=4, ~1+cat(group)+num(value)) [ Info: - Reconstructed 14 missing variables [ Info: Projecting onto NormalizationModel(rank=4, scale=true, ~1+cat(group)+num(value)) [ Info: - Reconstructed 14 missing variables [ Info: Projecting onto NormalizationModel(rank=1, ~num(value)) [ Info: Projecting onto NormalizationModel(rank=1, ~1) [ Info: - Removed 11 variables that where not found in Model [ Info: - Reconstructed 21 missing variables [ Info: - Reordered variables to match Model [ Info: Projecting onto FilterModel(50:-3:2, Colon()) [ Info: - Removed 11 variables that where not found in Model [ Info: - Skipped 6 missing variables [ Info: - Reordered variables to match Model [ Info: Projecting onto SCTransformModel(nvar=38, clip=4.42) [ Info: - Removed 16 variables that were not found in Model [ Info: - Skipped 14 missing variables [ Info: - Reordered variables to match Model [ Info: Projecting onto NormalizationModel(rank=4, ~1+cat(group)+num(value)) [ Info: - Reconstructed 14 missing variables [ Info: Projecting onto SVDModel(nsv=10) [ Info: Projecting onto NearestNeighborModel(base="force_layout", k=10) Test Summary: | Pass Error Total Time SingleCellProjections.jl | 2360 9 2369 6m08.2s MannWhitney | 127 127 7.6s DataMatrix | 98 98 5.2s Load | 348 348 32.6s Basic Workflow | 1093 9 1102 2m25.6s logtransform scale_factor=10000 T=Float64 | 30 30 8.8s logtransform scale_factor=10000 T=Float32 | 30 30 5.3s logtransform scale_factor=1000 T=Float64 | 30 30 0.2s logtransform scale_factor=1000 T=Float32 | 30 30 0.1s tf-idf scale_factor=10000 T=Float64 | 30 30 5.1s tf-idf scale_factor=10000 T=Float32 | 30 30 3.1s tf-idf scale_factor=1000 T=Float64 | 30 30 0.8s tf-idf scale_factor=1000 T=Float32 | 30 30 0.8s sctransform T=Float64 | 33 33 6.9s sctransform T=Float32 | 33 33 5.2s normalize | 41 41 11.6s normalize (external_obs::Annotations) | 16 16 5.1s normalize (external_obs::DataFrame) | 16 16 1.1s svd | 1 1 3.9s PrincipalMomentAnalysis | 1 1 1.8s filter counts | 124 124 17.8s filter normalized | 124 124 16.6s filter reduced | 124 124 6.0s force layout seed=1 | 1 1 3.9s force layout seed=2 | 1 1 0.0s force layout seed=3 | 1 1 0.0s force layout seed=4 | 1 1 0.0s force layout seed=5 | 1 1 0.0s UMAP | 1 1 0.9s t-SNE | 1 1 0.0s var_counts_fraction | 63 63 6.1s var_counts_sum | 51 51 3.3s pseudobulk counts | 114 114 17.0s pseudobulk transformed | 114 114 0.7s Duplicate var IDs | 58 58 7.8s Annotate | 37 37 12.5s F-test | 156 156 1m09.1s t-test | 197 197 10.7s Mann-Whitney U-test | 122 122 9.2s Projections | 116 116 34.7s barnes_hut | 8 8 2.5s RNG of the outermost testset: Xoshiro(0x92b8db0e13033ee0, 0xf1b04858a37cb760, 0x01dd44385c516cb3, 0xeade273b481607c8, 0xdd2f1bd0c3aabaf7) ERROR: LoadError: Some tests did not pass: 2360 passed, 0 failed, 9 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/SingleCellProjections/30C4U/test/runtests.jl:32 Testing failed after 937.19s ERROR: LoadError: Package SingleCellProjections errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3067 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2916 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval failed after 999.27s: package fails to precompile