Package evaluation to test RestrictedBoltzmannMachinesHDF5 on Julia 1.14.0-DEV.1475 (42ad41c179*) started at 2026-01-04T18:14:33.951 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 10.78s ################################################################################ # Installation # Installing RestrictedBoltzmannMachinesHDF5... Resolving package versions... Installed libaec_jll ────────────────────────────── v1.1.4+0 Installed MPICH_jll ─────────────────────────────── v4.3.2+0 Installed CommonWorldInvalidations ──────────────── v1.0.0 Installed Adapt ─────────────────────────────────── v4.4.0 Installed FillArrays ────────────────────────────── v1.15.0 Installed ConstructionBase ──────────────────────── v1.6.0 Installed Optimisers ────────────────────────────── v0.4.7 Installed EllipsisNotation ──────────────────────── v1.8.0 Installed MicrosoftMPI_jll ──────────────────────── v10.1.4+3 Installed Xorg_libpciaccess_jll ─────────────────── v0.18.1+0 Installed Functors ──────────────────────────────── v0.5.2 Installed ArrayInterface ────────────────────────── v7.22.0 Installed Compat ────────────────────────────────── v4.18.1 Installed Statistics ────────────────────────────── v1.11.1 Installed PrecompileTools ───────────────────────── v1.3.3 Installed NaNMath ───────────────────────────────── v1.1.3 Installed IrrationalConstants ───────────────────── v0.2.6 Installed OpenSpecFun_jll ───────────────────────── v0.5.6+0 Installed SciMLPublic ───────────────────────────── v1.0.1 Installed Requires ──────────────────────────────── v1.3.1 Installed StaticArrayInterface ──────────────────── v1.8.0 Installed ChainRulesCore ────────────────────────── v1.26.0 Installed StandardizedRestrictedBoltzmannMachines ─ v4.3.0 Installed OpenMPI_jll ───────────────────────────── v5.0.9+0 Installed HDF5_jll ──────────────────────────────── v1.14.6+0 Installed LogExpFunctions ───────────────────────── v0.3.29 Installed Hwloc_jll ─────────────────────────────── v2.12.2+0 Installed DiffRules ─────────────────────────────── v1.15.1 Installed IfElse ────────────────────────────────── v0.1.1 Installed XML2_jll ──────────────────────────────── v2.13.9+0 Installed MPIPreferences ────────────────────────── v0.1.11 Installed Libiconv_jll ──────────────────────────── v1.18.0+0 Installed RestrictedBoltzmannMachinesHDF5 ───────── v2.2.3 Installed JLLWrappers ───────────────────────────── v1.7.1 Installed Static ────────────────────────────────── v1.3.1 Installed SpecialFunctions ──────────────────────── v2.6.1 Installed Preferences ───────────────────────────── v1.5.1 Installed MPItrampoline_jll ─────────────────────── v5.5.4+0 Installed DocStringExtensions ───────────────────── v0.9.5 Installed HDF5 ──────────────────────────────────── v0.17.2 Installed RestrictedBoltzmannMachines ───────────── v3.9.0 Installing 8 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Xorg_libpciaccess 24.8 KiB Installed artifact libaec 49.6 KiB Installed artifact Libiconv 1.9 MiB Installed artifact Hwloc 3.5 MiB Installed artifact XML2 2.5 MiB Installed artifact MPICH 3.3 MiB Installed artifact HDF5 5.7 MiB Updating `~/.julia/environments/v1.14/Project.toml` [d76020e8] + RestrictedBoltzmannMachinesHDF5 v2.2.3 Updating `~/.julia/environments/v1.14/Manifest.toml` [79e6a3ab] + Adapt v4.4.0 [4fba245c] + ArrayInterface v7.22.0 [d360d2e6] + ChainRulesCore v1.26.0 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.5 [da5c29d0] + EllipsisNotation v1.8.0 [1a297f60] + FillArrays v1.15.0 [d9f16b24] + Functors v0.5.2 [f67ccb44] + HDF5 v0.17.2 [615f187c] + IfElse v0.1.1 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [3da0fdf6] + MPIPreferences v0.1.11 [77ba4419] + NaNMath v1.1.3 [3bd65402] + Optimisers v0.4.7 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [ae029012] + Requires v1.3.1 ⌅ [12e6b396] + RestrictedBoltzmannMachines v3.9.0 [d76020e8] + RestrictedBoltzmannMachinesHDF5 v2.2.3 [431bcebd] + SciMLPublic v1.0.1 [276daf66] + SpecialFunctions v2.6.1 [c8d9fdc7] + StandardizedRestrictedBoltzmannMachines v4.3.0 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [10745b16] + Statistics v1.11.1 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] + libaec_jll v1.1.4+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 13.58s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 Precompilation failed after 13.51s ################################################################################ # Testing # Testing RestrictedBoltzmannMachinesHDF5 Status `/tmp/jl_HG4n69/Project.toml` ⌅ [4c88cf16] Aqua v0.7.4 ⌅ [12e6b396] RestrictedBoltzmannMachines v3.9.0 [d76020e8] RestrictedBoltzmannMachinesHDF5 v2.2.3 [c8d9fdc7] StandardizedRestrictedBoltzmannMachines v4.3.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_HG4n69/Manifest.toml` [79e6a3ab] Adapt v4.4.0 ⌅ [4c88cf16] Aqua v0.7.4 [4fba245c] ArrayInterface v7.22.0 [d360d2e6] ChainRulesCore v1.26.0 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [187b0558] ConstructionBase v1.6.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.5 [da5c29d0] EllipsisNotation v1.8.0 [1a297f60] FillArrays v1.15.0 [d9f16b24] Functors v0.5.2 [f67ccb44] HDF5 v0.17.2 [615f187c] IfElse v0.1.1 [92d709cd] IrrationalConstants v0.2.6 [692b3bcd] JLLWrappers v1.7.1 [2ab3a3ac] LogExpFunctions v0.3.29 [3da0fdf6] MPIPreferences v0.1.11 [77ba4419] NaNMath v1.1.3 [3bd65402] Optimisers v0.4.7 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [ae029012] Requires v1.3.1 ⌅ [12e6b396] RestrictedBoltzmannMachines v3.9.0 [d76020e8] RestrictedBoltzmannMachinesHDF5 v2.2.3 [431bcebd] SciMLPublic v1.0.1 [276daf66] SpecialFunctions v2.6.1 [c8d9fdc7] StandardizedRestrictedBoltzmannMachines v4.3.0 [aedffcd0] Static v1.3.1 [0d7ed370] StaticArrayInterface v1.8.0 [10745b16] Statistics v1.11.1 ⌅ [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.2+0 [94ce4f54] Libiconv_jll v1.18.0+0 [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.9+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] libaec_jll v1.1.4+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ┌ Warning: `isbindingresolved(m::Module, var::Symbol)` is deprecated, use `true` instead. │ caller = walkmodules(f::Aqua.var"#undefined_exports##0#undefined_exports##1"{Vector{Symbol}}, x::Module) at exports.jl:5 └ @ Core ~/.julia/packages/Aqua/rmHe1/src/exports.jl:5 Piracy: Error During Test at /home/pkgeval/.julia/packages/Aqua/rmHe1/src/Aqua.jl:99 Got exception outside of a @test FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic` Stacktrace: [1] getproperty(x::Core.TypeName, f::Symbol) @ Base ./Base_compiler.jl:57 [2] all_methods(mods::Module; skip_deprecated::Bool) @ Aqua.Piracy ~/.julia/packages/Aqua/rmHe1/src/piracy.jl:55 [3] kwcall(::@NamedTuple{skip_deprecated::Bool}, ::typeof(Aqua.Piracy.all_methods), mods::Module) @ Aqua.Piracy ~/.julia/packages/Aqua/rmHe1/src/piracy.jl:21 [4] hunt(mod::Module; skip_deprecated::Bool, kwargs::@Kwargs{}) @ Aqua.Piracy ~/.julia/packages/Aqua/rmHe1/src/piracy.jl:194 [5] hunt(mod::Module) @ Aqua.Piracy ~/.julia/packages/Aqua/rmHe1/src/piracy.jl:193 [6] test_piracy(m::Module; broken::Bool, kwargs::@Kwargs{}) @ Aqua ~/.julia/packages/Aqua/rmHe1/src/piracy.jl:218 [7] test_piracy(m::Module) @ Aqua ~/.julia/packages/Aqua/rmHe1/src/piracy.jl:217 [8] macro expansion @ ~/.julia/packages/Aqua/rmHe1/src/Aqua.jl:101 [inlined] [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [10] test_all(testtarget::Module; ambiguities::@NamedTuple{exclude::Vector{typeof(reshape)}}, unbound_args::Bool, undefined_exports::Bool, project_extras::Bool, stale_deps::Bool, deps_compat::Bool, project_toml_formatting::Bool, piracy::Bool) @ Aqua ~/.julia/packages/Aqua/rmHe1/src/Aqua.jl:100 [11] kwcall(::@NamedTuple{ambiguities::@NamedTuple{exclude::Vector{typeof(reshape)}}}, ::typeof(Aqua.test_all), testtarget::Module) @ Aqua ~/.julia/packages/Aqua/rmHe1/src/Aqua.jl:53 [12] top-level scope @ ~/.julia/packages/RestrictedBoltzmannMachinesHDF5/n5RLP/test/aqua.jl:7 [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [14] macro expansion @ ~/.julia/packages/RestrictedBoltzmannMachinesHDF5/n5RLP/test/aqua.jl:7 [inlined] [15] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [16] top-level scope @ ~/.julia/packages/RestrictedBoltzmannMachinesHDF5/n5RLP/test/runtests.jl:1 [17] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [18] top-level scope @ none:6 [19] eval(m::Module, e::Any) @ Core ./boot.jl:489 [20] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [21] _start() @ Base ./client.jl:585 Test Summary: | Pass Error Total Time aqua | 8 1 9 40.3s Method ambiguity | 1 1 9.4s Unbound type parameters | 1 1 0.1s Undefined exports | 1 1 1.9s Compare Project.toml and test/Project.toml | 1 1 0.8s Stale dependencies | 1 1 9.5s Compat bounds | 1 1 1.7s Project.toml formatting | 2 2 0.4s Piracy | 1 1 1.9s RNG of the outermost testset: Random.Xoshiro(0x7f968b621c6bea00, 0x004aa8dfdbbb9695, 0x989b3feff0a54424, 0xd5b415fbbf472511, 0x536b5f939dcb05ea) ERROR: LoadError: Some tests did not pass: 8 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/RestrictedBoltzmannMachinesHDF5/n5RLP/test/aqua.jl:6 in expression starting at /home/pkgeval/.julia/packages/RestrictedBoltzmannMachinesHDF5/n5RLP/test/runtests.jl:1 Testing failed after 198.78s ERROR: LoadError: Package RestrictedBoltzmannMachinesHDF5 errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3067 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2916 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval failed after 260.12s: package tests unexpectedly errored