Package evaluation to test PlantSimEngine on Julia 1.14.0-DEV.1475 (42ad41c179*) started at 2026-01-04T21:32:36.690 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 7.77s ################################################################################ # Installation # Installing PlantSimEngine... Resolving package versions... Installed ChunkCodecLibZstd ─────────── v1.0.0 Installed CompositionsBase ──────────── v0.1.2 Installed MicroCollections ──────────── v0.2.0 Installed NameResolution ────────────── v0.1.5 Installed FilePathsBase ─────────────── v0.9.24 Installed URIs ──────────────────────── v1.6.1 Installed MacroTools ────────────────── v0.5.16 Installed DataStructures ────────────── v0.19.3 Installed DefineSingletons ──────────── v0.1.2 Installed InlineStrings ─────────────── v1.4.5 Installed AbstractTrees ─────────────── v0.4.5 Installed MetaGraphsNext ────────────── v0.7.5 Installed DelimitedFiles ────────────── v1.9.1 Installed JLD2 ──────────────────────── v0.6.3 Installed FLoops ────────────────────── v0.2.2 Installed ConstructionBase ──────────── v1.6.0 Installed ZipFile ───────────────────── v0.10.1 Installed UnicodeFun ────────────────── v0.4.1 Installed CodecZlib ─────────────────── v0.7.8 Installed ArnoldiMethod ─────────────── v0.4.0 Installed ContextVariablesX ─────────── v0.1.3 Installed MutableNamedTuples ────────── v0.1.3 Installed ExceptionUnwrapping ───────── v0.1.11 Installed ConcurrentUtilities ───────── v2.5.0 Installed HashArrayMappedTries ──────── v0.2.0 Installed JuliaVariables ────────────── v0.2.4 Installed OrderedCollections ────────── v1.8.1 Installed Compat ────────────────────── v4.18.1 Installed TranscodingStreams ────────── v0.11.3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed ProgressLogging ───────────── v0.1.6 Installed DataAPI ───────────────────── v1.16.0 Installed ZipArchives ───────────────── v2.6.0 Installed InvertedIndices ───────────── v1.3.1 Installed Statistics ────────────────── v1.11.1 Installed InitialValues ─────────────── v0.3.1 Installed CodecInflate64 ────────────── v0.1.3 Installed StringEncodings ───────────── v0.3.7 Installed PrecompileTools ───────────── v1.3.3 Installed DataValueInterfaces ───────── v1.0.0 Installed ArgCheck ──────────────────── v2.5.0 Installed SentinelArrays ────────────── v1.4.9 Installed MbedTLS ───────────────────── v1.1.9 Installed OpenSSL ───────────────────── v1.6.1 Installed FileIO ────────────────────── v1.17.1 Installed StaticArraysCore ──────────── v1.4.4 Installed PrettyPrint ───────────────── v0.2.0 Installed PlantSimEngine ────────────── v0.13.2 Installed LoggingExtras ─────────────── v1.2.0 Installed StaticArrays ──────────────── v1.9.16 Installed CodeTracking ──────────────── v3.0.0 Installed Term ──────────────────────── v2.0.8 Installed StringManipulation ────────── v0.4.2 Installed Requires ──────────────────── v1.3.1 Installed SimpleTraits ──────────────── v0.9.5 Installed YAML ──────────────────────── v0.4.16 Installed BangBang ──────────────────── v0.4.6 Installed HTTP ──────────────────────── v1.10.19 Installed Highlights ────────────────── v0.5.3 Installed CSV ───────────────────────── v0.10.15 Installed ChunkCodecLibZlib ─────────── v1.0.0 Installed BitFlags ──────────────────── v0.1.9 Installed FLoopsBase ────────────────── v0.1.1 Installed JSON ──────────────────────── v0.21.4 Installed Parsers ───────────────────── v2.8.3 Installed PrettyTables ──────────────── v2.4.0 Installed ScopedValues ──────────────── v1.5.0 Installed SplittablesBase ───────────── v0.1.15 Installed XML2_jll ──────────────────── v2.15.1+0 Installed Parameters ────────────────── v0.12.3 Installed Tables ────────────────────── v1.12.1 Installed Transducers ───────────────── v0.4.85 Installed Reexport ──────────────────── v1.2.2 Installed MyterialColors ────────────── v0.3.0 Installed InverseFunctions ──────────── v0.1.17 Installed Setfield ──────────────────── v1.1.2 Installed MultiScaleTreeGraph ───────── v0.14.4 Installed DataFrames ────────────────── v1.8.1 Installed Preferences ───────────────── v1.5.1 Installed SimpleBufferStream ────────── v1.2.0 Installed WeakRefStrings ────────────── v1.4.2 Installed PooledArrays ──────────────── v1.4.3 Installed Missings ──────────────────── v1.2.0 Installed Baselet ───────────────────── v0.1.1 Installed EzXML ─────────────────────── v1.2.3 Installed JLLWrappers ───────────────── v1.7.1 Installed TableTraits ───────────────── v1.0.1 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed LaTeXStrings ──────────────── v1.4.0 Installed Crayons ───────────────────── v4.1.1 Installed MbedTLS_jll ───────────────── v2.28.1010+0 Installed SortingAlgorithms ─────────── v1.2.2 Installed ChunkCodecCore ────────────── v1.0.1 Installed XLSX ──────────────────────── v0.10.4 Installed MLStyle ───────────────────── v0.4.17 Installed Graphs ────────────────────── v1.13.3 Installed UnPack ────────────────────── v1.0.2 Installed WorkerUtilities ───────────── v1.6.1 Installed Inflate ───────────────────── v0.1.5 Installed DocStringExtensions ───────── v0.9.5 Installed InputBuffers ──────────────── v1.1.1 Installed Accessors ─────────────────── v0.1.43 Installed PlantMeteo ────────────────── v0.6.1 Installing 4 artifacts Installed artifact XLSX_relocatable_data 6.0 KiB Installed artifact Libiconv 1.9 MiB Installed artifact XML2 2.2 MiB Installed artifact MbedTLS 2.2 MiB Updating `~/.julia/environments/v1.14/Project.toml` [9a576370] + PlantSimEngine v0.13.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.43 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [198e06fe] + BangBang v0.4.6 [9718e550] + Baselet v0.1.1 [d1d4a3ce] + BitFlags v0.1.9 [336ed68f] + CSV v0.10.15 [0b6fb165] + ChunkCodecCore v1.0.1 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [da1fd8a2] + CodeTracking v3.0.0 [6309b1aa] + CodecInflate64 v0.1.3 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [6add18c4] + ContextVariablesX v0.1.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [8f5d6c58] + EzXML v1.2.3 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [5789e2e9] + FileIO v1.17.1 [48062228] + FilePathsBase v0.9.24 [86223c79] + Graphs v1.13.3 [cd3eb016] + HTTP v1.10.19 [076d061b] + HashArrayMappedTries v0.2.0 [eafb193a] + Highlights v0.5.3 [d25df0c9] + Inflate v0.1.5 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.5 [0c81fc1b] + InputBuffers v1.1.1 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.6.3 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [b14d175d] + JuliaVariables v0.2.4 [b964fa9f] + LaTeXStrings v1.4.0 [e6f89c97] + LoggingExtras v1.2.0 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.9 [fa8bd995] + MetaGraphsNext v0.7.5 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [dd4a991b] + MultiScaleTreeGraph v0.14.4 [af6c499f] + MutableNamedTuples v0.1.3 [1c23619d] + MyterialColors v0.3.0 [71a1bf82] + NameResolution v0.1.5 [4d8831e6] + OpenSSL v1.6.1 [bac558e1] + OrderedCollections v1.8.1 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [4630fe09] + PlantMeteo v0.6.1 [9a576370] + PlantSimEngine v0.13.2 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [8162dcfd] + PrettyPrint v0.2.0 ⌅ [08abe8d2] + PrettyTables v2.4.0 [33c8b6b6] + ProgressLogging v0.1.6 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e506255] + ScopedValues v1.5.0 [91c51154] + SentinelArrays v1.4.9 [efcf1570] + Setfield v1.1.2 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [69024149] + StringEncodings v0.3.7 [892a3eda] + StringManipulation v0.4.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [22787eb5] + Term v2.0.8 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.85 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1cfade01] + UnicodeFun v0.4.1 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [fdbf4ff8] + XLSX v0.10.4 [ddb6d928] + YAML v0.4.16 [49080126] + ZipArchives v2.6.0 [a5390f91] + ZipFile v0.10.1 [94ce4f54] + Libiconv_jll v1.18.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [02c8fc9c] + XML2_jll v2.15.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 9.48s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 Precompilation failed after 9.19s ################################################################################ # Testing # Testing PlantSimEngine Status `/tmp/jl_G6drvd/Project.toml` [4c88cf16] Aqua v0.8.14 [6e4b80f9] BenchmarkTools v1.6.3 [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.8.1 [e30172f5] Documenter v1.16.1 [dd4a991b] MultiScaleTreeGraph v0.14.4 [4630fe09] PlantMeteo v0.6.1 [9a576370] PlantSimEngine v0.13.2 [10745b16] Statistics v1.11.1 [bd369af6] Tables v1.12.1 [ade2ca70] Dates v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_G6drvd/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [4c88cf16] Aqua v0.8.14 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [198e06fe] BangBang v0.4.6 [9718e550] Baselet v0.1.1 [6e4b80f9] BenchmarkTools v1.6.3 [d1d4a3ce] BitFlags v0.1.9 [336ed68f] CSV v0.10.15 [0b6fb165] ChunkCodecCore v1.0.1 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [da1fd8a2] CodeTracking v3.0.0 [6309b1aa] CodecInflate64 v0.1.3 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [6add18c4] ContextVariablesX v0.1.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.16.1 [460bff9d] ExceptionUnwrapping v0.1.11 [8f5d6c58] EzXML v1.2.3 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [5789e2e9] FileIO v1.17.1 [48062228] FilePathsBase v0.9.24 [d7ba0133] Git v1.5.0 [86223c79] Graphs v1.13.3 [cd3eb016] HTTP v1.10.19 [076d061b] HashArrayMappedTries v0.2.0 [eafb193a] Highlights v0.5.3 [b5f81e59] IOCapture v1.0.0 [d25df0c9] Inflate v0.1.5 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.5 [0c81fc1b] InputBuffers v1.1.1 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.6.3 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [b14d175d] JuliaVariables v0.2.4 [b964fa9f] LaTeXStrings v1.4.0 [0e77f7df] LazilyInitializedFields v1.3.0 [e6f89c97] LoggingExtras v1.2.0 [d8e11817] MLStyle v0.4.17 [1914dd2f] MacroTools v0.5.16 [d0879d2d] MarkdownAST v0.1.2 [739be429] MbedTLS v1.1.9 [fa8bd995] MetaGraphsNext v0.7.5 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [dd4a991b] MultiScaleTreeGraph v0.14.4 [af6c499f] MutableNamedTuples v0.1.3 [1c23619d] MyterialColors v0.3.0 [71a1bf82] NameResolution v0.1.5 [4d8831e6] OpenSSL v1.6.1 [bac558e1] OrderedCollections v1.8.1 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [4630fe09] PlantMeteo v0.6.1 [9a576370] PlantSimEngine v0.13.2 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [8162dcfd] PrettyPrint v0.2.0 ⌅ [08abe8d2] PrettyTables v2.4.0 [33c8b6b6] ProgressLogging v0.1.6 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [7e506255] ScopedValues v1.5.0 [91c51154] SentinelArrays v1.4.9 [efcf1570] Setfield v1.1.2 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.5 [a2af1166] SortingAlgorithms v1.2.2 [171d559e] SplittablesBase v0.1.15 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [22787eb5] Term v2.0.8 [3bb67fe8] TranscodingStreams v0.11.3 [28d57a85] Transducers v0.4.85 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [1cfade01] UnicodeFun v0.4.1 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [fdbf4ff8] XLSX v0.10.4 [ddb6d928] YAML v0.4.16 [49080126] ZipArchives v2.6.0 [a5390f91] ZipFile v0.10.1 [2e619515] Expat_jll v2.7.3+0 [020c3dae] Git_LFS_jll v3.7.0+0 [f8c6e375] Git_jll v2.52.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [9bd350c2] OpenSSH_jll v10.2.1+0 [02c8fc9c] XML2_jll v2.15.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. 1 dependency had output during precompilation: ┌ MutableNamedTuples │ WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). │ You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. │ To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. └ ┌ Warning: Ignoring incompatible compat entry `SHA = "0.7.0"` in "/home/pkgeval/.julia/packages/PlantSimEngine/AQ037/Project.toml". │ SHA is a non-upgradable standard library with version 1.0.0 in the current Julia version. │ Fix by setting compat to "0.7.0, 1" to mark support of the current version 1.0.0. └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:517 [ Info: Some variables must be initialized before simulation: (process1 = (:var1, :var2), process2 = (:var1,)) (see `to_initialize()`) [ Info: Model Process3Model from process process3 needs a model that is a subtype of Process2Model in process process2, but the process is not parameterized in the ModelList. ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::Dict{String, Tuple{Process1Model, Process2Model, PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, PlantSimEngine.HelperNextTimestepModel, MultiScaleModel{PlantSimEngine.HelperCurrentTimestepModel, Vector{Pair{Union{Symbol, PreviousTimeStep}, Union{Pair{String, Symbol}, Vector{Pair{String, Symbol}}}}}}, Status{(:var1, :var2, :current_timestep, :next_timestep), Tuple{Base.RefValue{Float64}, Base.RefValue{Float64}, Base.RefValue{Int64}, Base.RefValue{Int64}}}}}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{String, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ Core ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/mapping/compute_mapping.jl:28 ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::Dict{String, Tuple{Process1Model, Process2Model, PlantSimEngine.HelperNextTimestepModel, MultiScaleModel{PlantSimEngine.HelperCurrentTimestepModel, Vector{Pair{Union{Symbol, PreviousTimeStep}, Union{Pair{String, Symbol}, Vector{Pair{String, Symbol}}}}}}, Status{(:var1, :var2, :current_timestep, :next_timestep), Tuple{Base.RefValue{Float64}, Base.RefValue{Float64}, Base.RefValue{Int64}, Base.RefValue{Int64}}}}}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{String, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ Core ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/mapping/compute_mapping.jl:28 WARNING: Method definition process_(Type{PlantSimEngine.AbstractTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model}) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})(Array{Float64, 1}) in module PlantSimEngine at none:2 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})(Any) in module PlantSimEngine at none:2 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition inputs_(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition outputs_(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})() in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model}) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::Dict{String, Tuple{ToyLAIModel, Beer{Float64}, ToyRUEGrowthModel{Float64}, PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, PlantSimEngine.HelperNextTimestepModel, MultiScaleModel{PlantSimEngine.HelperCurrentTimestepModel, Vector{Pair{Union{Symbol, PreviousTimeStep}, Union{Pair{String, Symbol}, Vector{Pair{String, Symbol}}}}}}, Status{(:current_timestep, :next_timestep), Tuple{Base.RefValue{Int64}, Base.RefValue{Int64}}}}}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{String, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ Core ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/mapping/compute_mapping.jl:28 WARNING: Method definition process_(Type{PlantSimEngine.AbstractTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model}) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})(Array{Float64, 1}) in module PlantSimEngine at none:2 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})(Any) in module PlantSimEngine at none:2 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition inputs_(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition outputs_(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})() in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model}) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition process_(Type{PlantSimEngine.AbstractTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model}) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})(Array{Float64, 1}) in module PlantSimEngine at none:2 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})(Any) in module PlantSimEngine at none:2 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition inputs_(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition outputs_(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})() in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model}) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition process_(Type{PlantSimEngine.AbstractTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model}) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})(Array{Float64, 1}) in module PlantSimEngine at none:2 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})(Any) in module PlantSimEngine at none:2 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition inputs_(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition outputs_(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})() in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model}) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition process_(Type{PlantSimEngine.AbstractTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model}) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})(Array{Float64, 1}) in module PlantSimEngine at none:2 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})(Any) in module PlantSimEngine at none:2 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition inputs_(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition outputs_(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})() in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model}) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition process_(Type{PlantSimEngine.AbstractTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model}) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})(Array{Float64, 1}) in module PlantSimEngine at none:2 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})(Any) in module PlantSimEngine at none:2 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition inputs_(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition outputs_(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})() in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model}) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition process_(Type{PlantSimEngine.AbstractTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model}) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})(Array{Float64, 1}) in module PlantSimEngine at none:2 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})(Any) in module PlantSimEngine at none:2 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition inputs_(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition outputs_(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})() in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model}) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition process_(Type{PlantSimEngine.AbstractTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model}) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})(Array{Float64, 1}) in module PlantSimEngine at none:2 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})(Any) in module PlantSimEngine at none:2 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition inputs_(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition outputs_(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})() in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model}) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::Dict{String, Tuple{Process1Model, Process2Model, Process3Model, PlantSimEngine.HelperNextTimestepModel, MultiScaleModel{PlantSimEngine.HelperCurrentTimestepModel, Vector{Pair{Union{Symbol, PreviousTimeStep}, Union{Pair{String, Symbol}, Vector{Pair{String, Symbol}}}}}}, Status{(:var1, :var2, :current_timestep, :next_timestep), Tuple{Base.RefValue{Float64}, Base.RefValue{Float64}, Base.RefValue{Int64}, Base.RefValue{Int64}}}}}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{String, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ Core ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/mapping/compute_mapping.jl:28 ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::Dict{String, Tuple{Process1Model, Process2Model, Process3Model, Process4Model, Process5Model, Process6Model, PlantSimEngine.HelperNextTimestepModel, MultiScaleModel{PlantSimEngine.HelperCurrentTimestepModel, Vector{Pair{Union{Symbol, PreviousTimeStep}, Union{Pair{String, Symbol}, Vector{Pair{String, Symbol}}}}}}, Status{(:var9, :var0, :current_timestep, :next_timestep), Tuple{Base.RefValue{Float64}, Base.RefValue{Float64}, Base.RefValue{Int64}, Base.RefValue{Int64}}}}}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{String, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ Core ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/mapping/compute_mapping.jl:28 ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::Dict{String, Tuple{Process1Model, Process2Model, Process3Model, Process4Model, Process5Model, Process6Model, Process7Model, PlantSimEngine.HelperNextTimestepModel, MultiScaleModel{PlantSimEngine.HelperCurrentTimestepModel, Vector{Pair{Union{Symbol, PreviousTimeStep}, Union{Pair{String, Symbol}, Vector{Pair{String, Symbol}}}}}}, Status{(:var0, :current_timestep, :next_timestep), Tuple{Base.RefValue{Float64}, Base.RefValue{Int64}, Base.RefValue{Int64}}}}}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{String, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ Core ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/mapping/compute_mapping.jl:28 ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::Dict{String, Tuple{Process1Model, Process2Model, Process3Model, Process4Model, Process5Model, PlantSimEngine.HelperNextTimestepModel, MultiScaleModel{PlantSimEngine.HelperCurrentTimestepModel, Vector{Pair{Union{Symbol, PreviousTimeStep}, Union{Pair{String, Symbol}, Vector{Pair{String, Symbol}}}}}}, Status{(:var0, :current_timestep, :next_timestep), Tuple{Base.RefValue{Float64}, Base.RefValue{Int64}, Base.RefValue{Int64}}}}}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{String, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ Core ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/mapping/compute_mapping.jl:28 ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::Dict{String, Tuple{Any, Vararg{Any}}}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{String, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ Core ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/mapping/compute_mapping.jl:28 ┌ Warning: A parallel executor was provided (`executor=ThreadedEx()`) but some models cannot be run in parallel: ToyRUEGrowthModel{Float64}(0.3). The simulation will be run sequentially. Use `executor=SequentialEx()` to remove this warning. └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/AQ037/src/run.jl:210 ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::Dict{String, Tuple{ToyLAIModel, Beer{Float64}, ToyRUEGrowthModel{Float64}, ToyTestDegreeDaysCumulModel, PlantSimEngine.HelperNextTimestepModel, MultiScaleModel{PlantSimEngine.HelperCurrentTimestepModel, Vector{Pair{Union{Symbol, PreviousTimeStep}, Union{Pair{String, Symbol}, Vector{Pair{String, Symbol}}}}}}, Status{(:current_timestep, :next_timestep), Tuple{Base.RefValue{Int64}, Base.RefValue{Int64}}}}}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{String, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ Core ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/mapping/compute_mapping.jl:28 WARNING: Method definition process_(Type{PlantSimEngine.AbstractTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model}) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})(Array{Float64, 1}) in module PlantSimEngine at none:2 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})(Any) in module PlantSimEngine at none:2 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition inputs_(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition outputs_(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model})() in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, Type{PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model}) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTt_Cu6Cab5197A130D4D7Fb7Cc069A71De4484D14Dea9Model, Any, Any, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition process_(Type{PlantSimEngine.AbstractTtf3920A5Fb90905Db0Ee6F0Fece74Bea7F10349FdModel}) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTtf3920A5Fb90905Db0Ee6F0Fece74Bea7F10349FdModel})(Array{Float64, 1}) in module PlantSimEngine at none:2 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTtf3920A5Fb90905Db0Ee6F0Fece74Bea7F10349FdModel})(Any) in module PlantSimEngine at none:2 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition inputs_(PlantSimEngine.MyTtf3920A5Fb90905Db0Ee6F0Fece74Bea7F10349FdModel) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition outputs_(PlantSimEngine.MyTtf3920A5Fb90905Db0Ee6F0Fece74Bea7F10349FdModel) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{PlantSimEngine.MyTtf3920A5Fb90905Db0Ee6F0Fece74Bea7F10349FdModel})() in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, Type{PlantSimEngine.MyTtf3920A5Fb90905Db0Ee6F0Fece74Bea7F10349FdModel}) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTtf3920A5Fb90905Db0Ee6F0Fece74Bea7F10349FdModel, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTtf3920A5Fb90905Db0Ee6F0Fece74Bea7F10349FdModel, Any, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition run!(PlantSimEngine.MyTtf3920A5Fb90905Db0Ee6F0Fece74Bea7F10349FdModel, Any, Any, Any, Any, Any) in module PlantSimEngine at none:1 overwritten on the same line (check for duplicate calls to `include`). [ Info: Model Process3Model from process process3 needs a model that is a subtype of Process2Model in process process2, but the process is not parameterized in the ModelList. ┌ Warning: Parallelisation over objects was removed, (but may be reintroduced in the future). Parallelisation will only occur over timesteps. └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/AQ037/src/run.jl:283 ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::Dict{String, Tuple{Process1Model, Process2Model, Process3Model, PlantSimEngine.MyVar10Ed51173F59F729F7656506E6F391Bd2F66B96A7Model, PlantSimEngine.HelperNextTimestepModel, MultiScaleModel{PlantSimEngine.HelperCurrentTimestepModel, Vector{Pair{Union{Symbol, PreviousTimeStep}, Union{Pair{String, Symbol}, Vector{Pair{String, Symbol}}}}}}, Status{(:var2, :current_timestep, :next_timestep), Tuple{Base.RefValue{Float64}, Base.RefValue{Int64}, Base.RefValue{Int64}}}}}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{String, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ Core ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/mapping/compute_mapping.jl:28 ┌ Warning: Parallelisation over objects was removed, (but may be reintroduced in the future). Parallelisation will only occur over timesteps. └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/AQ037/src/run.jl:154 ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::Dict{String, Tuple{Process1Model, Process2Model, Process3Model}}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{String, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ Core ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/mapping/compute_mapping.jl:28 Issue in function #155 for node #3. 2 2 1 2 2 2 2 2 3 2 2 4 2 2 5 2 3 1 2 3 2 2 3 3 2 3 4 2 3 5 ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::Dict{String, Any}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{String, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ Core ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/mapping/compute_mapping.jl:28 ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::Dict{String, Tuple{Process1Model, Status{(:var1, :var2), Tuple{Base.RefValue{Float64}, Base.RefValue{Float64}}}}}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{String, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ Core ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/mapping/compute_mapping.jl:28 ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::Dict{String, Tuple{Process1Model, Process2Model, Process3Model, Status{(:var1,), Tuple{Base.RefValue{Float64}}}}}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{String, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ Core ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/mapping/compute_mapping.jl:28 inputs and outputs of a mapping: Test Failed at /home/pkgeval/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale.jl:111 Expression: collect(keys(ins)) == collect(keys(mapping_1)) Evaluated: ["Plant", "Internode", "Leaf", "Soil"] == ["Soil", "Internode", "Leaf", "Plant"] Stacktrace: [1] top-level scope @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale.jl:109 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale.jl:111 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] inputs and outputs of a mapping: Test Failed at /home/pkgeval/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale.jl:116 Expression: collect(keys(outs)) == collect(keys(mapping_1)) Evaluated: ["Plant", "Internode", "Leaf", "Soil"] == ["Soil", "Internode", "Leaf", "Plant"] Stacktrace: [1] top-level scope @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale.jl:109 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale.jl:116 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] inputs and outputs of a mapping: Test Failed at /home/pkgeval/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale.jl:122 Expression: collect(keys(vars)) == collect(keys(mapping_1)) Evaluated: ["Plant", "Internode", "Leaf", "Soil"] == ["Soil", "Internode", "Leaf", "Plant"] Stacktrace: [1] top-level scope @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale.jl:109 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale.jl:122 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] Issue in function #155 for node #4. Status initialisation: Test Failed at /home/pkgeval/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale.jl:133 Expression: collect(keys(organs_statuses)) == ["Soil", "Internode", "Plant", "Leaf"] Evaluated: ["Plant", "Internode", "Leaf", "Soil"] == ["Soil", "Internode", "Plant", "Leaf"] Stacktrace: [1] top-level scope @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale.jl:130 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale.jl:133 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] ┌ Warning: Promoting `carbon_biomass` value taken from MTG node 4 (Internode) from Float64 to Float32: 1.0 (Float32) └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/initialisation.jl:128 ┌ Warning: Promoting `carbon_biomass` value taken from MTG node 5 (Leaf) from Float64 to Float32: 1.0 (Float32) └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/initialisation.jl:128 ┌ Warning: Promoting `carbon_biomass` value taken from MTG node 6 (Internode) from Float64 to Float32: 1.0 (Float32) └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/initialisation.jl:128 ┌ Warning: Promoting `carbon_biomass` value taken from MTG node 7 (Leaf) from Float64 to Float32: 1.0 (Float32) └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/initialisation.jl:128 Multiscale initialisations and outputs: Test Failed at /home/pkgeval/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale.jl:173 Expression: collect(keys(organs_statuses)) == ["Soil", "Internode", "Plant", "Leaf"] Evaluated: ["Plant", "Internode", "Leaf", "Soil"] == ["Soil", "Internode", "Plant", "Leaf"] Stacktrace: [1] top-level scope @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale.jl:162 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale.jl:173 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] Multiscale initialisations and outputs: Test Failed at /home/pkgeval/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale.jl:198 Expression: collect(keys(statuses)) == ["Soil", "Internode", "Plant", "Leaf"] Evaluated: ["Plant", "Internode", "Leaf", "Soil"] == ["Soil", "Internode", "Plant", "Leaf"] Stacktrace: [1] top-level scope @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale.jl:162 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale.jl:198 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] Multiscale initialisations and outputs: Test Failed at /home/pkgeval/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale.jl:210 Expression: PlantSimEngine.pre_allocate_outputs(statuses, status_templates, reverse_multiscale_mapping, vars_need_init, outs, nsteps) Expected: "You requested outputs for organs Soil, Flowers, Leaf, but organs Flowers have no models." Message: "You requested outputs for organs Leaf, Flowers, Soil, but organs Flowers have no models." Stacktrace: [1] top-level scope @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale.jl:162 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale.jl:210 [inlined] Multiscale initialisations and outputs: Log Test Failed at /home/pkgeval/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale.jl:213 Expression: PlantSimEngine.pre_allocate_outputs(statuses, status_templates, reverse_multiscale_mapping, vars_need_init, outs, nsteps, check = false) Log Pattern: (:info, "You requested outputs for organs Soil, Flowers, Leaf, but organs Flowers have no models.") (:info, "You requested outputs for variable non_existing_variable in organ Leaf, but it has no model.") Captured Logs: LogRecord(Info, "You requested outputs for organs Leaf, Flowers, Soil, but organs Flowers have no models.", PlantSimEngine, :save_results, :PlantSimEngine_c48e0fd1, "/home/pkgeval/.julia/packages/PlantSimEngine/AQ037/src/mtg/save_results.jl", 161, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}()) LogRecord(Info, "You requested outputs for variable non_existing_variable in organ Leaf, but it has no model.", PlantSimEngine, :save_results, :PlantSimEngine_c48e0fd2, "/home/pkgeval/.julia/packages/PlantSimEngine/AQ037/src/mtg/save_results.jl", 184, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}()) Stacktrace: [1] record(ts::Test.DefaultTestSet, t::Test.LogTestFailure) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/logging.jl:166 [2] top-level scope @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale.jl:162 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [4] macro expansion @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale.jl:213 [inlined] ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::Dict{String, Tuple{ToySoilWaterModel{Vector{Float64}}}}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{String, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ Core ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/mapping/compute_mapping.jl:28 ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::Dict{String, Tuple{ToyCDemandModel{Float64}, Status{(:TT,), Tuple{Base.RefValue{Float64}}}}}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{String, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ Core ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/mapping/compute_mapping.jl:28 Issue in function #155 for node #3. Issue in function #155 for node #5. ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::Dict{String, Tuple{Process1Model, Process2Model, Process3Model, Status{(:var1, :var2), Tuple{Base.RefValue{Float64}, Base.RefValue{Float64}}}}}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{String, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ Core ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/mapping/compute_mapping.jl:28 ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::Dict{String, Tuple{Any, Any, Any, Vararg{Status{(:TT,), Tuple{Base.RefValue{Float64}}}}}}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{String, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ Core ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/mapping/compute_mapping.jl:28 ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::Dict{String, Tuple{Any, MultiScaleModel{T, Vector{Pair{Union{Symbol, PreviousTimeStep}, Union{Pair{String, Symbol}, Vector{Pair{String, Symbol}}}}}} where T<:AbstractModel, Any, Vararg{Status{(:TT,), Tuple{Base.RefValue{Float64}}}}}}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{String, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ Core ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/mapping/compute_mapping.jl:28 Cyclic dependency -> fixed with `PreviousTimeStep`: Test Failed at /source/usr/share/julia/stdlib/v1.14/Test/src/Test.jl:1108 Expression: contains_warn(read(fname, String), $(Expr(:escape, Test.var"#@test_nowarn##0#@test_nowarn##1"()))) Evaluated: contains_warn("┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead.\n│ caller = mapped_variables(mapping::Dict{String, Tuple{Any, MultiScaleModel{T, Vector{Pair{Union{Symbol, PreviousTimeStep}, Union{Pair{String, Symbol}, Vector{Pair{String, Symbol}}}}}} where T<:AbstractModel, Any, Vararg{Status{(:TT,), Tuple{Base.RefValue{Float64}}}}}}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{String, Any}, Any}; verbose::Bool) at compute_mapping.jl:28\n└ @ Core ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/mapping/compute_mapping.jl:28\n", Test.var"#@test_nowarn##0#@test_nowarn##1"()) Stacktrace: [1] top-level scope @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale-cyclic-dep.jl:60 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale-cyclic-dep.jl:96 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] Mutiscale simulation -> cyclic dependency: Test Failed at /home/pkgeval/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale-cyclic-dep.jl:239 Expression: sorted_reduced_ref_df_no_missing == sorted_out_df_dict_organ Evaluated: 2×5 DataFrame Row │ LAI TT_cu aPPFD node timestep │ Float64? Float64? Float64? Int64 Int64 ─────┼───────────────────────────────────────────────── 1 │ 0.002 10.0 1.64421 1 1 2 │ 0.00785089 25.0 10.7383 1 2 == 2×5 DataFrame Row │ LAI TT_cu aPPFD node timestep │ Float64 Float64 Float64 Int64 Int64 ─────┼─────────────────────────────────────────────── 1 │ 0.002 10.0 1.64421 1 1 2 │ 0.00685089 25.0 9.37329 1 2 Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] [2] macro expansion @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale-cyclic-dep.jl:239 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [4] top-level scope @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale-cyclic-dep.jl:119 Mutiscale simulation -> cyclic dependency: Test Failed at /home/pkgeval/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale-cyclic-dep.jl:239 Expression: sorted_reduced_ref_df_no_missing == sorted_out_df_dict_organ Evaluated: 5×6 DataFrame Row │ TT_cu_emergence carbon_allocation carbon_biomass carbon_demand node ⋯ │ Float64? Float64? Float64? Float64? Int6 ⋯ ─────┼────────────────────────────────────────────────────────────────────────── 1 │ 0.0 0.0411053 0.0373685 0.5 ⋯ 2 │ 0.0 0.0411053 0.0373685 0.5 3 │ 0.0 0.178952 0.200052 0.75 4 │ 0.0 0.178952 0.200052 0.75 5 │ 25.0 0.178952 0.162684 0.75 ⋯ 2 columns omitted == 5×6 DataFrame Row │ TT_cu_emergence carbon_allocation carbon_biomass carbon_demand node ⋯ │ Float64 Float64 Float64 Float64 Int6 ⋯ ─────┼────────────────────────────────────────────────────────────────────────── 1 │ 0.0 0.0411053 0.0373685 0.5 ⋯ 2 │ 0.0 0.0411053 0.0373685 0.5 3 │ 0.0 0.156203 0.179371 0.75 4 │ 0.0 0.156203 0.179371 0.75 5 │ 25.0 0.156203 0.142002 0.75 ⋯ 2 columns omitted Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] [2] macro expansion @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale-cyclic-dep.jl:239 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [4] top-level scope @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale-cyclic-dep.jl:119 Mutiscale simulation -> cyclic dependency: Test Failed at /home/pkgeval/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale-cyclic-dep.jl:239 Expression: sorted_reduced_ref_df_no_missing == sorted_out_df_dict_organ Evaluated: 5×5 DataFrame Row │ carbon_allocation carbon_biomass carbon_demand node timestep │ Float64? Float64? Float64? Int64 Int64 ─────┼─────────────────────────────────────────────────────────────────── 1 │ 0.0411053 0.0342544 0.5 5 1 2 │ 0.0411053 0.0342544 0.5 7 1 3 │ 0.178952 0.183381 0.75 5 2 4 │ 0.178952 0.183381 0.75 7 2 5 │ 0.178952 0.149127 0.75 9 2 == 5×5 DataFrame Row │ carbon_allocation carbon_biomass carbon_demand node timestep │ Float64 Float64 Float64 Int64 Int64 ─────┼─────────────────────────────────────────────────────────────────── 1 │ 0.0411053 0.0342544 0.5 5 1 2 │ 0.0411053 0.0342544 0.5 7 1 3 │ 0.156203 0.164423 0.75 5 2 4 │ 0.156203 0.164423 0.75 7 2 5 │ 0.156203 0.130169 0.75 9 2 Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] [2] macro expansion @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale-cyclic-dep.jl:239 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [4] top-level scope @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale-cyclic-dep.jl:119 Mutiscale simulation -> cyclic dependency: Test Failed at /home/pkgeval/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale-cyclic-dep.jl:239 Expression: sorted_reduced_ref_df_no_missing == sorted_out_df_dict_organ Evaluated: 2×7 DataFrame Row │ aPPFD carbon_assimilation node soil_water_content surface t ⋯ │ Float64? Float64? Int64 Float64? Float64? I ⋯ ─────┼────────────────────────────────────────────────────────────────────────── 1 │ 1.64421 0.164421 3 0.5 0.002 ⋯ 2 │ 10.7383 1.07383 3 0.5 0.00785089 2 columns omitted == 2×7 DataFrame Row │ aPPFD carbon_assimilation node soil_water_content surface ti ⋯ │ Float64 Float64 Int64 Float64 Float64 In ⋯ ─────┼────────────────────────────────────────────────────────────────────────── 1 │ 1.64421 0.164421 3 0.5 0.002 ⋯ 2 │ 9.37329 0.937329 3 0.5 0.00685089 2 columns omitted Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] [2] macro expansion @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale-cyclic-dep.jl:239 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [4] top-level scope @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-mtg-multiscale-cyclic-dep.jl:119 Multiscale nested hard dependencies: Error During Test at /home/pkgeval/.julia/packages/PlantSimEngine/AQ037/test/test-corner-cases.jl:231 Test threw exception Expression: ((model_ech1.hard_dependency[1]).children[1]).parent.parent == model_ech1 BoundsError: attempt to access 0-element Vector{PlantSimEngine.HardDependencyNode} at index [1] Stacktrace: [1] throw_boundserror(A::Vector{PlantSimEngine.HardDependencyNode}, I::Tuple{Int64}) @ Base ./essentials.jl:13 [2] checkbounds @ ./essentials.jl:385 [inlined] [3] getindex(A::Vector{PlantSimEngine.HardDependencyNode}, i::Int64) @ Base ./essentials.jl:964 [4] top-level scope @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-corner-cases.jl:175 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [6] macro expansion @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-corner-cases.jl:231 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:770 [inlined] ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::Dict{String, Tuple{AbstractModel, Any, Status{N, Tuple{Base.RefValue{Float64}}} where N}}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{String, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ Core ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/mapping/compute_mapping.jl:28 ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::Dict{String, Tuple{Any, Status{N, Tuple{Base.RefValue{Float64}, Base.RefValue{Float64}}} where N}}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{String, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ Core ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/mapping/compute_mapping.jl:28 test set: Test Failed at /home/pkgeval/.julia/packages/PlantSimEngine/AQ037/test/test-performance.jl:31 Expression: nthr > 1 Evaluated: 1 > 1 Stacktrace: [1] top-level scope @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-performance.jl:29 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-performance.jl:31 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] Single and multi-threaded output consistency: Test Failed at /home/pkgeval/.julia/packages/PlantSimEngine/AQ037/test/test-performance.jl:62 Expression: nthr > 1 Evaluated: 1 > 1 Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] [2] macro expansion @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-performance.jl:62 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [4] top-level scope @ ~/.julia/packages/PlantSimEngine/AQ037/test/test-performance.jl:61 ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter ~/.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl:680 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. ┌ Error: doctest failure in ../src/mtg/mapping/reverse_mapping.jl:62-68 │ │ ```jldoctest mylabel │ julia> PlantSimEngine.reverse_mapping(mapping) │ Dict{String, Dict{String, Dict{Symbol, Any}}} with 3 entries: │ "Soil" => Dict("Leaf"=>Dict(:soil_water_content=>:soil_water_content)) │ "Internode" => Dict("Plant"=>Dict(:carbon_allocation=>:carbon_allocation, :ca… │ "Leaf" => Dict("Plant"=>Dict(:carbon_allocation=>:carbon_allocation, :ca… │ ``` │ │ Subexpression: │ │ PlantSimEngine.reverse_mapping(mapping) │ │ Evaluated output: │ │ ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ │ caller = mapped_variables(mapping::Dict{String, Any}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{String, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 │ └ @ Core ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/mapping/compute_mapping.jl:28 │ Dict{String, Dict{String, Dict{Symbol, Any}}} with 3 entries: │ "Internode" => Dict("Plant"=>Dict(:carbon_allocation=>:carbon_allocation, :ca… │ "Leaf" => Dict("Plant"=>Dict(:carbon_allocation=>:carbon_allocation, :ca… │ "Soil" => Dict("Leaf"=>Dict(:soil_water_content=>:soil_water_content)) │ │ Expected output: │ │ Dict{String, Dict{String, Dict{Symbol, Any}}} with 3 entries: │ "Soil" => Dict("Leaf"=>Dict(:soil_water_content=>:soil_water_content)) │ "Internode" => Dict("Plant"=>Dict(:carbon_allocation=>:carbon_allocation, :ca… │ "Leaf" => Dict("Plant"=>Dict(:carbon_allocation=>:carbon_allocation, :ca… │ │ diff = │ Warning: Diff output requires color. │ ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ │ caller = mapped_variables(mapping::Dict{String, Any}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{String, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 │ └ @ Core ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/mapping/compute_mapping.jl:28 │ Dict{String, Dict{String, Dict{Symbol, Any}}} with 3 entries: │ "Soil" => Dict("Leaf"=>Dict(:soil_water_content=>:soil_water_content)) │ "Internode" => Dict("Plant"=>Dict(:carbon_allocation=>:carbon_allocation, :ca… │ "Leaf" => Dict("Plant"=>Dict(:carbon_allocation=>:carbon_allocation, :ca…:ca… │ "Soil" => Dict("Leaf"=>Dict(:soil_water_content=>:soil_water_content)) └ @ Documenter ~/.julia/packages/PlantSimEngine/AQ037/src/mtg/mapping/reverse_mapping.jl:62 ┌ Error: Doctesting failed │ exception = │ `makedocs` encountered a doctest error. Terminating build │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:44 │ [2] runner(::Type{Documenter.Builder.Doctest}, doc::Documenter.Document) │ @ Documenter ~/.julia/packages/Documenter/xvqbW/src/builder_pipeline.jl:213 │ [3] dispatch(::Type{Documenter.Builder.DocumentPipeline}, x::Documenter.Document) │ @ Documenter.Selectors ~/.julia/packages/Documenter/xvqbW/src/utilities/Selectors.jl:170 │ [4] #89 │ @ ~/.julia/packages/Documenter/xvqbW/src/makedocs.jl:283 [inlined] │ [5] withenv(::Documenter.var"#89#90"{Documenter.Document}, ::Pair{String, Nothing}, ::Vararg{Pair{String, Nothing}}) │ @ Base ./env.jl:265 │ [6] #87 │ @ ~/.julia/packages/Documenter/xvqbW/src/makedocs.jl:282 [inlined] │ [7] cd(f::Documenter.var"#87#88"{Documenter.Document}, dir::String) │ @ Base.Filesystem ./file.jl:112 │ [8] makedocs(; debug::Bool, format::Documenter.HTMLWriter.HTML, kwargs::@Kwargs{root::String, source::String, sitename::String, doctest::Symbol, modules::Vector{Module}, doctestfilters::Vector{Regex}, remotes::Nothing, plugins::Vector{Documenter.Plugin}}) │ @ Documenter ~/.julia/packages/Documenter/xvqbW/src/makedocs.jl:281 │ [9] kwcall(::@NamedTuple{root::String, source::String, sitename::String, doctest::Symbol, modules::Vector{Module}, doctestfilters::Vector{Regex}, remotes::Nothing, plugins::Vector{Documenter.Plugin}}, ::typeof(makedocs)) │ @ Documenter ~/.julia/packages/Documenter/xvqbW/src/makedocs.jl:274 │ [10] (::Documenter.var"#all_doctests#141"{Bool, Vector{Regex}, Vector{Documenter.Plugin}, Vector{Module}})() │ @ Documenter ~/.julia/packages/Documenter/xvqbW/src/doctest.jl:85 │ [11] macro expansion │ @ ~/.julia/packages/Documenter/xvqbW/src/doctest.jl:110 [inlined] │ [12] macro expansion │ @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:770 [inlined] │ [13] macro expansion │ @ ~/.julia/packages/Documenter/xvqbW/src/doctest.jl:110 [inlined] │ [14] macro expansion │ @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] │ [15] doctest(source::Nothing, modules::Vector{Module}; fix::Bool, testset::String, doctestfilters::Vector{Regex}, plugins::Vector{Documenter.Plugin}) │ @ Documenter ~/.julia/packages/Documenter/xvqbW/src/doctest.jl:110 │ [16] doctest │ @ ~/.julia/packages/Documenter/xvqbW/src/doctest.jl:69 [inlined] │ [17] doctest(package::Module; manual::Bool, testset::Nothing, kwargs::@Kwargs{}) │ @ Documenter ~/.julia/packages/Documenter/xvqbW/src/doctest.jl:37 │ [18] kwcall(::@NamedTuple{manual::Bool}, ::typeof(doctest), package::Module) │ @ Documenter ~/.julia/packages/Documenter/xvqbW/src/doctest.jl:20 │ [19] top-level scope │ @ ~/.julia/packages/PlantSimEngine/AQ037/test/runtests.jl:18 │ [20] macro expansion │ @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] │ [21] macro expansion │ @ ~/.julia/packages/PlantSimEngine/AQ037/test/runtests.jl:78 [inlined] │ [22] macro expansion │ @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] │ [23] macro expansion │ @ ~/.julia/packages/PlantSimEngine/AQ037/test/runtests.jl:81 [inlined] │ [24] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:310 │ [25] top-level scope │ @ none:6 │ [26] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [27] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:310 │ [28] _start() │ @ Base ./client.jl:585 └ @ Documenter ~/.julia/packages/Documenter/xvqbW/src/doctest.jl:99 Doctests: PlantSimEngine: Test Failed at /home/pkgeval/.julia/packages/Documenter/xvqbW/src/doctest.jl:110 Expression: all_doctests() Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] [2] macro expansion @ ~/.julia/packages/Documenter/xvqbW/src/doctest.jl:110 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [4] doctest(source::Nothing, modules::Vector{Module}; fix::Bool, testset::String, doctestfilters::Vector{Regex}, plugins::Vector{Documenter.Plugin}) @ Documenter ~/.julia/packages/Documenter/xvqbW/src/doctest.jl:110 Test Summary: | Pass Fail Error Total Time Testing PlantSimEngine | 1030 16 1 1047 23m07.2s Unbound type parameters | 1 1 0.1s Undefined exports | 1 1 0.0s Compare Project.toml and test/Project.toml | 1 1 0.4s Stale dependencies | 1 1 38.0s Compat bounds | 4 4 0.5s Piracy | 1 1 20.3s Persistent tasks | 1 1 1m09.6s ModelList | 341 341 6m50.1s ModelList | 17 17 1m41.2s MultiScaleModel | 25 25 2.1s Status | 32 32 3.0s TimeStepTable | 27 27 12.5s Dimensions | 6 6 0.8s Simulations | 235 235 3m25.4s Statistics | 4 4 1.8s Fitting | 1 1 7.9s Toy models | 25 25 39.3s MTG with multiscale mapping | 169 13 182 2m34.1s MTG initialisation | 4 4 6.8s Multiscale dependency graph | 10 10 1.1s inputs and outputs of a mapping | 9 3 12 8.0s Status initialisation | 17 1 18 2.7s Multiscale initialisations and outputs | 15 4 19 12.4s Mapping: missing initialisation | 8 8 5.8s Mapping: missing organ in mapping (Soil) | 1 1 0.6s Mapping: missing model at other scale (soil_water_content) + missing init + var1 from MTG | 1 1 2.0s Mapping: missing init + var1 from MTG | 4 4 1.0s run! on MTG: simple mapping | 12 12 12.6s run! on MTG with complete mapping (missing init) | 10 10 3.9s run! on MTG with complete mapping (with init) | 26 26 0.6s MTG initialisation | 5 5 6.1s MTG with complex mapping | 6 6 8.8s MTG with dynamic output variables | 21 21 2.4s MTG with dynamic growth | 8 8 0.6s Cyclic dependency -> error | 3 3 15.2s Cyclic dependency -> fixed with `PreviousTimeStep` | 5 1 6 16.5s Mutiscale simulation -> cyclic dependency | 4 4 8 42.6s Multiscale corner-cases | 17 1 18 1m33.5s Multiscale nested hard dependencies | 1 1 2 34.6s Soft dependency whose parent is a hard dependency of a parent at a different scale | 2 2 22.3s Process/model reuse at different scales | 7 7 28.3s Issue 105 : no outputs when simulating a mapping with one meteo timestep | 3 3 1.8s Issue 111 : Multiscale : outputs not saved when dependency graph only has one depth level | 2 2 0.0s Issue #86 : BoundsError with a single model and several Weather timesteps | 2 2 5.7s Multithreading | 120 2 122 2m03.5s test set | 3 1 4 55.2s Single and multi-threaded output consistency | 117 1 118 43.4s Doctests | 1 1 49.5s Doctests: PlantSimEngine | 1 1 46.8s RNG of the outermost testset: Random.Xoshiro(0xab2a947904fcf115, 0x913234fe9a6c4800, 0xc8f7f31f08b00781, 0xf4ba06c95f4686c4, 0xfcaf22919a9f9df6) ERROR: LoadError: Some tests did not pass: 1030 passed, 16 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PlantSimEngine/AQ037/test/runtests.jl:17 Testing failed after 2064.53s ERROR: LoadError: Package PlantSimEngine errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3067 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2916 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval failed after 2167.41s: package tests unexpectedly errored