Package evaluation to test NonNegLeastSquares on Julia 1.14.0-DEV.1475 (42ad41c179*) started at 2026-01-04T12:36:30.779 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 9.95s ################################################################################ # Installation # Installing NonNegLeastSquares... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [b7351bd1] + NonNegLeastSquares v0.4.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [b7351bd1] + NonNegLeastSquares v0.4.1 [56f22d72] + Artifacts v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 0.86s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 Precompilation failed after 12.95s ################################################################################ # Testing # Testing NonNegLeastSquares Status `/tmp/jl_RXQ58Q/Project.toml` [b7351bd1] NonNegLeastSquares v0.4.1 [438e738f] PyCall v1.96.4 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_RXQ58Q/Manifest.toml` [8f4d0f93] Conda v1.10.3 [682c06a0] JSON v1.3.0 [1914dd2f] MacroTools v0.5.16 [b7351bd1] NonNegLeastSquares v0.4.1 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [438e738f] PyCall v1.96.4 [ec057cc2] StructUtils v2.6.0 [81def892] VersionParsing v1.3.0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.4+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 Testing Running tests... ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for PyCall [438e738f-606a-5dbb-bf0a-cddfbfd45ab0] │ exception = Required dependency Base.PkgId(Base.UUID("81def892-9a0e-5fdd-b105-ffc91e053289"), "VersionParsing") failed to load from a cache file. └ @ Base loading.jl:2950 ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for Conda [8f4d0f93-b110-5947-807f-2305c1781a2d] │ exception = Required dependency Base.PkgId(Base.UUID("21216c6a-2e73-6563-6e65-726566657250"), "Preferences") failed to load from a cache file. └ @ Base loading.jl:2950 [ Info: Installing scipy.optimize via the Conda scipy package... [ Info: Running `conda install -q -y scipy` in root environment Channels: - conda-forge Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/pkgeval/.julia/conda/3/x86_64 added / updated specs: - scipy The following packages will be downloaded: package | build ---------------------------|----------------- scipy-1.16.3 | py312h54fa4ab_2 15.9 MB conda-forge ------------------------------------------------------------ Total: 15.9 MB The following NEW packages will be INSTALLED: scipy conda-forge/linux-64::scipy-1.16.3-py312h54fa4ab_2 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done use_parallel = false testing f = Main.nnls Unreachable reached at 0x7e99751f9841 [280] signal 4 (2): Illegal instruction in expression starting at /home/pkgeval/.julia/packages/NonNegLeastSquares/DRyA5/test/runtests.jl:83 copy at /home/pkgeval/.julia/packages/PyCall/1gn3u/src/pyarray.jl:150 [inlined] pyocopy at /home/pkgeval/.julia/packages/PyCall/1gn3u/src/pyarray.jl:252 unknown function (ip: 0x3) at (unknown file) unknown function (ip: 0x7e995d260bcf) at (unknown file) Allocations: 39343319 (Pool: 39343025; Big: 294); GC: 20 Testing failed after 183.11s ERROR: LoadError: Package NonNegLeastSquares errored during testing (received signal: 4) Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3067 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2916 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval crashed after 224.2s: an unreachable instruction was executed ################################################################################ # Bug reporting # The package crashed during testing (reason=unreachable), but PkgEval was unable to reproduce the crash under rr (status=fail, reason=test_errors). For debugging, here is the tail end of the rr log: > [4] runconda(args::Cmd, env::String) > @ Conda ~/.julia/packages/Conda/05AVg/src/Conda.jl:182 > [5] add(pkg::String, env::String; channel::String, satisfied_skip_solve::Bool, args::Cmd) > @ Conda ~/.julia/packages/Conda/05AVg/src/Conda.jl:343 > ┌ [6] add > │ @ ~/.julia/packages/Conda/05AVg/src/Conda.jl:326 [inlined] > ╰──── repeated 2 times > [8] pyimport_conda(modulename::String, condapkg::String, channel::String) > @ PyCall ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:721 > [9] pyimport_conda(modulename::String, condapkg::String) > @ PyCall ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:715 > [10] top-level scope > @ ~/.julia/packages/NonNegLeastSquares/DRyA5/test/runtests.jl:9 > [11] include(mapexpr::Function, mod::Module, _path::String) > @ Base ./Base.jl:310 > [12] top-level scope > @ none:6 > [13] eval(m::Module, e::Any) > @ Core ./boot.jl:489 > [14] exec_options(opts::Base.JLOptions) > @ Base ./client.jl:310 > [15] _start() > @ Base ./client.jl:585 > in expression starting at /home/pkgeval/.julia/packages/NonNegLeastSquares/DRyA5/test/runtests.jl:9 > > caused by: PyError (PyImport_ImportModule > > The Python package scipy.optimize could not be imported by pyimport. Usually this means > that you did not install scipy.optimize in the Python version being used by PyCall. > > PyCall is currently configured to use the Julia-specific Python distribution > installed by the Conda.jl package. To install the scipy.optimize module, you can > use `pyimport_conda("scipy.optimize", PKG)`, where PKG is the Anaconda > package that contains the module scipy.optimize, or alternatively you can use the > Conda package directly (via `using Conda` followed by `Conda.add` etcetera). > > Alternatively, if you want to use a different Python distribution on your > system, such as a system-wide Python (as opposed to the Julia-specific Python), > you can re-configure PyCall with that Python. As explained in the PyCall > documentation, set ENV["PYTHON"] to the path/name of the python executable > you want to use, run Pkg.build("PyCall"), and re-launch Julia. > > ) > ModuleNotFoundError("No module named 'scipy'") > > Stacktrace: > [1] pyimport(name::String) > @ PyCall ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:558 > [2] pyimport_conda(modulename::String, condapkg::String, channel::String) > @ PyCall ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:716 > [3] pyimport_conda(modulename::String, condapkg::String) > @ PyCall ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:715 > [4] top-level scope > @ ~/.julia/packages/NonNegLeastSquares/DRyA5/test/runtests.jl:9 > [5] include(mapexpr::Function, mod::Module, _path::String) > @ Base ./Base.jl:310 > [6] top-level scope > @ none:6 > [7] eval(m::Module, e::Any) > @ Core ./boot.jl:489 > [8] exec_options(opts::Base.JLOptions) > @ Base ./client.jl:310 > [9] _start() > @ Base ./client.jl:585 > > Testing failed after 313.98s > > ERROR: LoadError: Package NonNegLeastSquares errored during testing > Stacktrace: > [1] pkgerror(msg::String) > @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 > [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) > @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3067 > [3] test > @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2916 [inlined] > [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) > @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 > [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) > @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 > [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) > @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 > [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) > @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 > [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) > @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 > [9] test > @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] > [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) > @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 > [11] top-level scope > @ /PkgEval.jl/scripts/evaluate.jl:235 > [12] include(mod::Module, _path::String) > @ Base ./Base.jl:309 > [13] exec_options(opts::Base.JLOptions) > @ Base ./client.jl:344 > [14] _start() > @ Base ./client.jl:585 > in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 > > PkgEval failed after 362.88s: package tests unexpectedly errored