Package evaluation to test Margins on Julia 1.14.0-DEV.1475 (42ad41c179*) started at 2026-01-04T22:09:55.146 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 8.82s ################################################################################ # Installation # Installing Margins... Resolving package versions... Installed CommonWorldInvalidations ──── v1.0.0 Installed Indexing ──────────────────── v1.1.1 Installed DiffResults ───────────────── v1.1.0 Installed MacroTools ────────────────── v0.5.16 Installed CodecLz4 ──────────────────── v0.4.6 Installed DataStructures ────────────── v0.19.3 Installed ForwardDiff ───────────────── v1.3.1 Installed MixedModels ───────────────── v4.38.1 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed ArrowTypes ────────────────── v2.3.0 Installed InlineStrings ─────────────── v1.4.5 Installed GLM ───────────────────────── v1.9.1 Installed FillArrays ────────────────── v1.15.0 Installed StatsModels ───────────────── v0.7.7 Installed Lz4_jll ───────────────────── v1.10.1+0 Installed CodecZstd ─────────────────── v0.8.7 Installed HypergeometricFunctions ───── v0.3.28 Installed Adapt ─────────────────────── v4.4.0 Installed AliasTables ───────────────── v1.1.3 Installed ConcurrentUtilities ───────── v2.5.0 Installed ExprTools ─────────────────── v0.1.10 Installed StringViews ───────────────── v1.3.6 Installed SplitApplyCombine ─────────── v1.2.3 Installed StatsBase ─────────────────── v0.34.9 Installed Compat ────────────────────── v4.18.1 Installed ShiftedArrays ─────────────── v2.0.0 Installed Combinatorics ─────────────── v1.1.0 Installed OrderedCollections ────────── v1.8.1 Installed MixedModelsDatasets ───────── v0.1.2 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed TranscodingStreams ────────── v0.11.3 Installed TimeZones ─────────────────── v1.22.2 Installed DataAPI ───────────────────── v1.16.0 Installed InvertedIndices ───────────── v1.3.1 Installed DataValueInterfaces ───────── v1.0.0 Installed CEnum ─────────────────────── v0.5.0 Installed StatsAPI ──────────────────── v1.8.0 Installed Statistics ────────────────── v1.11.1 Installed CommonSubexpressions ──────── v0.3.1 Installed PrecompileTools ───────────── v1.3.3 Installed ProgressMeter ─────────────── v1.11.0 Installed SentinelArrays ────────────── v1.4.9 Installed IrrationalConstants ───────── v0.2.6 Installed StaticArraysCore ──────────── v1.4.4 Installed FastGaussQuadrature ───────── v1.1.0 Installed QuadGK ────────────────────── v2.11.2 Installed StringManipulation ────────── v0.4.2 Installed StaticArrays ──────────────── v1.9.16 Installed NaNMath ───────────────────── v1.1.3 Installed SciMLPublic ───────────────── v1.0.1 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed JSON3 ─────────────────────── v1.14.3 Installed Requires ──────────────────── v1.3.1 Installed ArrayLayouts ──────────────── v1.12.2 Installed GroupedArrays ─────────────── v0.3.4 Installed StandardizedPredictors ────── v1.0.1 Installed BitIntegers ───────────────── v0.3.6 Installed DiffRules ─────────────────── v1.15.1 Installed LogExpFunctions ───────────── v0.3.29 Installed Rmath ─────────────────────── v0.9.0 Installed Parsers ───────────────────── v2.8.3 Installed IfElse ────────────────────── v0.1.1 Installed TypedTables ───────────────── v1.4.6 Installed PrettyTables ──────────────── v3.1.2 Installed Distributions ─────────────── v0.25.122 Installed StatsFuns ─────────────────── v1.5.2 Installed Tables ────────────────────── v1.12.1 Installed EnumX ─────────────────────── v1.0.5 Installed PtrArrays ─────────────────── v1.3.0 Installed Scratch ───────────────────── v1.3.0 Installed CovarianceMatrices ────────── v0.22.0 Installed DataFrames ────────────────── v1.8.1 Installed Reexport ──────────────────── v1.2.2 Installed SpecialFunctions ──────────── v2.6.1 Installed BandedMatrices ────────────── v1.11.0 Installed Static ────────────────────── v1.3.1 Installed Preferences ───────────────── v1.5.1 Installed Missings ──────────────────── v1.2.0 Installed PooledArrays ──────────────── v1.4.3 Installed FormulaCompiler ───────────── v1.1.3 Installed JLLWrappers ───────────────── v1.7.1 Installed TableTraits ───────────────── v1.0.1 Installed TZJData ───────────────────── v1.5.0+2025b Installed LaTeXStrings ──────────────── v1.4.0 Installed Crayons ───────────────────── v4.1.1 Installed PDMats ────────────────────── v0.11.37 Installed StructTypes ───────────────── v1.11.0 Installed NLopt ─────────────────────── v1.2.1 Installed SortingAlgorithms ─────────── v1.2.2 Installed CategoricalArrays ─────────── v0.10.8 Installed Dictionaries ──────────────── v0.4.6 Installed Mocking ───────────────────── v0.8.1 Installed NLopt_jll ─────────────────── v2.10.0+0 Installed DocStringExtensions ───────── v0.9.5 Installed BSplineKit ────────────────── v0.19.1 Installed Arrow ─────────────────────── v2.8.0 Installed Margins ───────────────────── v2.0.3 Installing 5 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Lz4 239.7 KiB Installed artifact NLopt 322.7 KiB Installed artifact tzjdata 112.5 KiB Updating `~/.julia/environments/v1.14/Project.toml` [883ce5cb] + Margins v2.0.3 Updating `~/.julia/environments/v1.14/Manifest.toml` [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.12.2 [69666777] + Arrow v2.8.0 [31f734f8] + ArrowTypes v2.3.0 [093aae92] + BSplineKit v0.19.1 [aae01518] + BandedMatrices v1.11.0 [c3b6d118] + BitIntegers v0.3.6 [fa961155] + CEnum v0.5.0 ⌅ [324d7699] + CategoricalArrays v0.10.8 [5ba52731] + CodecLz4 v0.4.6 [6b39b394] + CodecZstd v0.8.7 [861a8166] + Combinatorics v1.1.0 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 ⌅ [60f91f6f] + CovarianceMatrices v0.22.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [85a47980] + Dictionaries v0.4.6 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [e2ba6199] + ExprTools v0.1.10 [442a2c76] + FastGaussQuadrature v1.1.0 [1a297f60] + FillArrays v1.15.0 [72341345] + FormulaCompiler v1.1.3 [f6369f11] + ForwardDiff v1.3.1 [38e38edf] + GLM v1.9.1 [6407cd72] + GroupedArrays v0.3.4 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [313cdc1a] + Indexing v1.1.1 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [883ce5cb] + Margins v2.0.3 [e1d29d7a] + Missings v1.2.0 ⌅ [ff71e718] + MixedModels v4.38.1 [7e9fb7ac] + MixedModelsDatasets v0.1.2 [78c3b35d] + Mocking v0.8.1 [76087f3c] + NLopt v1.2.1 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [431bcebd] + SciMLPublic v1.0.1 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [03a91e81] + SplitApplyCombine v1.2.3 [5064a6a7] + StandardizedPredictors v1.0.1 [aedffcd0] + Static v1.3.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.9 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.7 [892a3eda] + StringManipulation v0.4.2 [354b36f9] + StringViews v1.3.6 [856f2bd8] + StructTypes v1.11.0 [dc5dba14] + TZJData v1.5.0+2025b [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [f269a46b] + TimeZones v1.22.2 [3bb67fe8] + TranscodingStreams v0.11.3 [9d95f2ec] + TypedTables v1.4.6 [5ced341a] + Lz4_jll v1.10.1+0 [079eb43e] + NLopt_jll v2.10.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 10.52s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 Precompilation failed after 12.16s ################################################################################ # Testing # Testing Margins Status `/tmp/jl_bOaROJ/Project.toml` [6e4b80f9] BenchmarkTools v1.6.3 [336ed68f] CSV v0.10.15 ⌅ [324d7699] CategoricalArrays v0.10.8 ⌅ [60f91f6f] CovarianceMatrices v0.22.0 [a93c6f00] DataFrames v1.8.1 [31c24e10] Distributions v0.25.122 [72341345] FormulaCompiler v1.1.3 [38e38edf] GLM v1.9.1 [883ce5cb] Margins v2.0.3 ⌅ [ff71e718] MixedModels v4.38.1 [ce6b1742] RDatasets v0.8.1 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.9 [3eaba693] StatsModels v0.7.7 [bd369af6] Tables v1.12.1 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_bOaROJ/Manifest.toml` [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.12.2 [69666777] Arrow v2.8.0 [31f734f8] ArrowTypes v2.3.0 [093aae92] BSplineKit v0.19.1 [aae01518] BandedMatrices v1.11.0 [6e4b80f9] BenchmarkTools v1.6.3 [c3b6d118] BitIntegers v0.3.6 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.15 ⌅ [324d7699] CategoricalArrays v0.10.8 [5ba52731] CodecLz4 v0.4.6 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.7 [861a8166] Combinatorics v1.1.0 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 ⌅ [60f91f6f] CovarianceMatrices v0.22.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [85a47980] Dictionaries v0.4.6 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [e2ba6199] ExprTools v0.1.10 [442a2c76] FastGaussQuadrature v1.1.0 [5789e2e9] FileIO v1.17.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [72341345] FormulaCompiler v1.1.3 [f6369f11] ForwardDiff v1.3.1 [38e38edf] GLM v1.9.1 [6407cd72] GroupedArrays v0.3.4 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [313cdc1a] Indexing v1.1.1 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌃ [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [883ce5cb] Margins v2.0.3 [e1d29d7a] Missings v1.2.0 ⌅ [ff71e718] MixedModels v4.38.1 [7e9fb7ac] MixedModelsDatasets v0.1.2 [78c3b35d] Mocking v0.8.1 [76087f3c] NLopt v1.2.1 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [df47a6cb] RData v1.1.0 [ce6b1742] RDatasets v0.8.1 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [431bcebd] SciMLPublic v1.0.1 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.9 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [03a91e81] SplitApplyCombine v1.2.3 [5064a6a7] StandardizedPredictors v1.0.1 [aedffcd0] Static v1.3.1 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.9 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.7 [892a3eda] StringManipulation v0.4.2 [354b36f9] StringViews v1.3.6 [856f2bd8] StructTypes v1.11.0 [dc5dba14] TZJData v1.5.0+2025b [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [f269a46b] TimeZones v1.22.2 [3bb67fe8] TranscodingStreams v0.11.3 [9d95f2ec] TypedTables v1.4.6 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [5ced341a] Lz4_jll v1.10.1+0 [079eb43e] NLopt_jll v2.10.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... WARNING: Constructor for type "Type" was extended in `Flatbuf` without explicit qualification or import.  NOTE: Assumed "Type" refers to `Base.Type`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Type end`.  Hint: To silence the warning, qualify `Type` as `Base.Type` in the method signature or explicitly `import Base: Type`.  Downloading artifact: TestData ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ caller = glm(::Matrix{Float64}, ::Vector{Float64}, ::Distributions.Bernoulli{Float64}, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Any, Nothing, @NamedTuple{wts::Vector{Float64}, dofit::Bool, offset::Vector{Float64}}}) at glmfit.jl:618 └ @ Core ~/.julia/packages/GLM/1vKhA/src/glmfit.jl:618 2 dependencies had output during precompilation: ┌ MixedModels │ Downloading artifact: TestData │ ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ │ caller = glm(::Matrix{Float64}, ::Vector{Float64}, ::Distributions.Bernoulli{Float64}, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Any, Nothing, @NamedTuple{wts::Vector{Float64}, dofit::Bool, offset::Vector{Float64}}}) at glmfit.jl:618 │ └ @ Core ~/.julia/packages/GLM/1vKhA/src/glmfit.jl:618 └ ┌ Arrow │ WARNING: Constructor for type "Type" was extended in `Flatbuf` without explicit qualification or import. │ NOTE: Assumed "Type" refers to `Base.Type`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Type end`. │ Hint: To silence the warning, qualify `Type` as `Base.Type` in the method signature or explicitly `import Base: Type`. └ [ Info: Skipping contrasts for variable z: specified as mixture in reference grid (use discrete levels if contrasts desired) Minimizing 2 Time: 0:00:00 ( 0.25 s/it) objective: 1798.0391401915217   Minimizing 14 Time: 0:00:00 (46.34 ms/it) ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ caller = glm(::Matrix{Float64}, ::Vector{Float64}, ::Binomial{Float64}, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Any, Nothing, @NamedTuple{wts::Vector{Float64}, dofit::Bool, offset::Vector{Float64}}}) at glmfit.jl:618 └ @ Core ~/.julia/packages/GLM/1vKhA/src/glmfit.jl:618 Minimizing 2 Time: 0:00:00 ( 0.32 s/it) objective: 126.3474937319155   Minimizing 73 Time: 0:00:00 ( 8.94 ms/it) ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ caller = glm(::Matrix{Float64}, ::Vector{Float64}, ::Bernoulli{Float64}, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Any, Nothing, @NamedTuple{wts::Vector{Float64}, dofit::Bool, offset::Vector{Float64}}}) at glmfit.jl:618 └ @ Core ~/.julia/packages/GLM/1vKhA/src/glmfit.jl:618 Minimizing 2 Time: 0:00:00 ( 0.13 s/it) objective: 524.2283322643004   Minimizing 87 Time: 0:00:00 ( 3.26 ms/it) Test Summary: | Pass Total Time Core Functionality | 316 316 9m49.7s [ Info: Skipping contrasts for variable education: specified as mixture in reference grid (use discrete levels if contrasts desired) ┌ Warning: Empty dataset provided to hierarchical_grid(). Representative values may be undefined (NaN/missing). └ @ Margins ~/.julia/packages/Margins/Q2cRr/src/profile/reference_grids.jl:904 ┌ Warning: Categorical combination Dict(:education => "Graduate", :country => "USA", :region => "South", :city => "CityB") matches no observations in data └ @ Margins ~/.julia/packages/Margins/Q2cRr/src/profile/reference_grids.jl:1048 ┌ Warning: Categorical combination Dict(:education => "HS", :country => "USA", :region => "South", :city => "CityA") matches no observations in data └ @ Margins ~/.julia/packages/Margins/Q2cRr/src/profile/reference_grids.jl:1048 ┌ Warning: Categorical combination Dict(:education => "HS", :country => "USA", :region => "East", :city => "CityB") matches no observations in data └ @ Margins ~/.julia/packages/Margins/Q2cRr/src/profile/reference_grids.jl:1048 ┌ Warning: 16 out of 24 categorical combinations (66.7%) match no data. Consider reviewing specification. └ @ Margins ~/.julia/packages/Margins/Q2cRr/src/profile/reference_grids.jl:1057 [ Info: Medium grid estimated: 15000 combinations. [ Info: Skipping contrasts for variable bool_implicit: specified as mixture in reference grid (use discrete levels if contrasts desired) Bool variable filled by grid completion: Test Failed at /home/pkgeval/.julia/packages/Margins/Q2cRr/test/regression/test_bool_mixture_skip.jl:40 Expression: all(result_df.contrast .== "derivative") Evaluated: all(Bool[0, 0]) Stacktrace: [1] top-level scope @ ~/.julia/packages/Margins/Q2cRr/test/regression/test_bool_mixture_skip.jl:11 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/Margins/Q2cRr/test/regression/test_bool_mixture_skip.jl:15 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [5] macro expansion @ ~/.julia/packages/Margins/Q2cRr/test/regression/test_bool_mixture_skip.jl:40 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] [ Info: Skipping contrasts for variable other_bool: specified as mixture in reference grid (use discrete levels if contrasts desired) [ Info: Skipping contrasts for variable bool_var: specified as mixture in reference grid (use discrete levels if contrasts desired) ✓ All second differences tests passed ✓ All second_differences_at() tests passed Test Summary: | Pass Fail Total Time Advanced Features | 759 1 760 8m19.6s Elasticity Features | 32 32 19.4s CategoricalMixture Construction and Validation | 29 29 1.9s Mixture Validation Against Data | 8 8 0.7s Mixture to Scenario Value Conversion | 7 7 1.6s Integration with Margins Workflow | 32 32 43.6s Bool Column Profile Handling | 31 31 21.2s Table-based Profile Margins | 39 39 28.6s Prediction Scale Computation (:link vs :response) | 32 32 17.6s Prediction Standard Errors by Scale | 7 7 2.9s Profile Prediction Grids with Scales | 13 13 5.1s Edge Cases and Error Handling | 9 9 5.5s Hierarchical Reference Grid Grammar | 80 80 21.3s Deep Hierarchical Nesting (3+ Levels) | 148 148 6.1s Integration with profile_margins() Workflow | 16 16 3.7s Grammar Parsing Infrastructure | 12 12 1.4s String-to-Categorical Conversion | 33 33 18.7s CategoricalArrays Integration | 4 4 0.1s Bool Mixture Skip for Profile Margins | 10 1 11 47.3s Bool variable filled by grid completion | 2 1 3 16.8s Multiple Bool variables with grid completion | 4 4 13.4s Explicit Bool values in reference grid (not mixture) | 2 2 14.5s Bool variable with 0.0 and 1.0 Float values (edge case) | 2 2 2.6s Second Differences - Basic Functionality | 35 35 31.8s Second Differences - Edge Cases | 3 3 6.6s Second Differences - Statistical Properties | 5 5 13.8s Second Differences - Continuous Scaling | 11 11 11.1s Second Differences - Categorical × Categorical | 6 6 36.6s Second Differences - Unified Wrapper | 32 32 30.0s second_differences_at() - Local Derivatives | 125 125 1m56.2s RNG of the outermost testset: Xoshiro(0xdca2f9f657ce1616, 0x77185a4868bc8270, 0x0dcc8b1e05e4f959, 0xabb1b083af27dbe9, 0x38c693ff79937f82) ERROR: LoadError: Some tests did not pass: 759 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/Margins/Q2cRr/test/runtests.jl:37 Testing failed after 1951.86s ERROR: LoadError: Package Margins errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3067 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2916 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval failed after 2031.3s: package has test failures