Package evaluation to test MLJMultivariateStatsInterface on Julia 1.14.0-DEV.1475 (42ad41c179*) started at 2026-01-04T18:48:24.111 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 9.18s ################################################################################ # Installation # Installing MLJMultivariateStatsInterface... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [1b6a4a23] + MLJMultivariateStatsInterface v0.5.4 Updating `~/.julia/environments/v1.14/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [7d9fca2a] + Arpack v0.5.4 [324d7699] + CategoricalArrays v1.0.2 [af321ab8] + CategoricalDistributions v0.2.1 [3da002f7] + ColorTypes v0.12.1 [34da2185] + Compat v4.18.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.15.0 [53c48c17] + FixedPointNumbers v0.8.5 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e80e1ace] + MLJModelInterface v1.12.1 [1b6a4a23] + MLJMultivariateStatsInterface v0.5.4 [e1d29d7a] + Missings v1.2.0 [6f286f6a] + MultivariateStats v0.10.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [321657f4] + ScientificTypes v3.1.2 [30f210dd] + ScientificTypesBase v3.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.9 [4c63d2b9] + StatsFuns v1.5.2 [892a3eda] + StringManipulation v0.4.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 ⌅ [68821587] + Arpack_jll v3.5.2+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.1s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 Precompilation failed after 12.89s ################################################################################ # Testing # Testing MLJMultivariateStatsInterface Status `/tmp/jl_mjWVpM/Project.toml` [af321ab8] CategoricalDistributions v0.2.1 [b4f34e82] Distances v0.10.12 [a7f614a8] MLJBase v1.12.1 [e80e1ace] MLJModelInterface v1.12.1 [1b6a4a23] MLJMultivariateStatsInterface v0.5.4 [6f286f6a] MultivariateStats v0.10.3 [860ef19b] StableRNGs v1.0.4 [a19d573c] StatisticalMeasures v0.3.3 [2913bbd2] StatsBase v0.34.9 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_mjWVpM/Manifest.toml` [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [7d9fca2a] Arpack v0.5.4 [a9b6321e] Atomix v1.1.2 [198e06fe] BangBang v0.4.6 [9718e550] Baselet v0.1.1 [324d7699] CategoricalArrays v1.0.2 [af321ab8] CategoricalDistributions v0.2.1 [d360d2e6] ChainRulesCore v1.26.0 [3da002f7] ColorTypes v0.12.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [ed09eef8] ComputationalResources v0.3.2 [187b0558] ConstructionBase v1.6.0 [6add18c4] ContextVariablesX v0.1.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [1a297f60] FillArrays v1.15.0 [53c48c17] FixedPointNumbers v0.8.5 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [22cec73e] InitialValues v0.3.1 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [b14d175d] JuliaVariables v0.2.4 [63c18a36] KernelAbstractions v0.9.39 [b964fa9f] LaTeXStrings v1.4.0 [92ad9a40] LearnAPI v2.0.1 [2ab3a3ac] LogExpFunctions v0.3.29 [c2834f40] MLCore v1.0.0 [a7f614a8] MLJBase v1.12.1 [e80e1ace] MLJModelInterface v1.12.1 [1b6a4a23] MLJMultivariateStatsInterface v0.5.4 [d8e11817] MLStyle v0.4.17 [f1d291b0] MLUtils v0.4.8 [1914dd2f] MacroTools v0.5.16 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [6f286f6a] MultivariateStats v0.10.3 [872c559c] NNlib v0.9.32 [71a1bf82] NameResolution v0.1.5 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [d96e819e] Parameters v0.12.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [8162dcfd] PrettyPrint v0.2.0 [08abe8d2] PrettyTables v3.1.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [321657f4] ScientificTypes v3.1.2 [30f210dd] ScientificTypesBase v3.0.0 [7e506255] ScopedValues v1.5.0 [efcf1570] Setfield v1.1.2 [605ecd9f] ShowCases v0.1.0 [699a6c99] SimpleTraits v0.9.5 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [171d559e] SplittablesBase v0.1.15 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [a19d573c] StatisticalMeasures v0.3.3 [c062fc1d] StatisticalMeasuresBase v0.1.3 [64bff920] StatisticalTraits v3.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.9 [4c63d2b9] StatsFuns v1.5.2 [892a3eda] StringManipulation v0.4.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [28d57a85] Transducers v0.4.85 [3a884ed6] UnPack v1.0.2 [013be700] UnsafeAtomics v0.3.0 ⌅ [68821587] Arpack_jll v3.5.2+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... utils Test Summary: | Pass Total Time replace! | 4 4 6.2s Test Summary: | Pass Total Time softmax | 3 3 3.9s component_analysis PCA: Test Failed at /home/pkgeval/.julia/packages/MLJMultivariateStatsInterface/dIha1/test/testutils.jl:30 Expression: Xtr_mlj ≈ Xtr_ms Evaluated: [26.464574759710057 0.5765335310014036 … 0.028681173609029078 0.4965845183410571; 23.561736878931185 0.3364195784602067 … -0.022209418265385833 -0.01652072294357506; … ; -19.17495693421189 -1.3185318507543922 … -0.7364537209330524 0.4754525769256493; -24.741408267718224 -2.585783222426179 … 0.07468882669360875 0.11539441725819981] ≈ [26.464574759710057 0.5765335310013957 … -0.028681173609071773 0.49658451834105827; 23.56173687893119 0.33641957846020054 … 0.022209418265380265 -0.016520722943571795; … ; -19.17495693421189 -1.318531850754397 … 0.7364537209330226 0.4754525769257102; -24.741408267718224 -2.5857832224261736 … -0.07468882669361529 0.11539441725819592] Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] [2] test_decomposition_model(ms_model::MultivariateStats.PCA{Float64}, mlj_model::PCA, X::@NamedTuple{FL::Vector{Float64}, RW::Vector{Float64}, CL::Vector{Float64}, CW::Vector{Float64}, BD::Vector{Float64}}, X_array::Matrix{Float64}; test_inverse::Bool) @ Main ~/.julia/packages/MLJMultivariateStatsInterface/dIha1/test/testutils.jl:30 [3] test_decomposition_model(ms_model::MultivariateStats.PCA{Float64}, mlj_model::PCA, X::@NamedTuple{FL::Vector{Float64}, RW::Vector{Float64}, CL::Vector{Float64}, CW::Vector{Float64}, BD::Vector{Float64}}, X_array::Matrix{Float64}) @ Main ~/.julia/packages/MLJMultivariateStatsInterface/dIha1/test/testutils.jl:22 [4] top-level scope @ ~/.julia/packages/MLJMultivariateStatsInterface/dIha1/test/models/decomposition_models.jl:4 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [6] macro expansion @ ~/.julia/packages/MLJMultivariateStatsInterface/dIha1/test/models/decomposition_models.jl:14 [inlined] PCA: Test Failed at /home/pkgeval/.julia/packages/MLJMultivariateStatsInterface/dIha1/test/models/decomposition_models.jl:22 Expression: report.mean == MS.mean(pca_ms) Evaluated: [15.583, 12.738499999999997, 32.1055, 36.4145, 14.0305] == [15.582999999999997, 12.738499999999998, 32.1055, 36.414500000000004, 14.030499999999993] Stacktrace: [1] top-level scope @ ~/.julia/packages/MLJMultivariateStatsInterface/dIha1/test/models/decomposition_models.jl:4 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/MLJMultivariateStatsInterface/dIha1/test/models/decomposition_models.jl:22 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] PCA: Test Failed at /home/pkgeval/.julia/packages/MLJMultivariateStatsInterface/dIha1/test/models/decomposition_models.jl:23 Expression: report.principalvars == MS.principalvars(pca_ms) Evaluated: [140.70571875906828, 1.2968367554774174, 1.0002691285383998, 0.13529931878620077, 0.0779142290846141] == [140.70571875906828, 1.2968367554774107, 1.0002691285384189, 0.1352993187862019, 0.07791422908462331] Stacktrace: [1] top-level scope @ ~/.julia/packages/MLJMultivariateStatsInterface/dIha1/test/models/decomposition_models.jl:4 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/MLJMultivariateStatsInterface/dIha1/test/models/decomposition_models.jl:23 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] PCA: Test Failed at /home/pkgeval/.julia/packages/MLJMultivariateStatsInterface/dIha1/test/models/decomposition_models.jl:24 Expression: report.loadings == MS.loadings(pca_ms) Evaluated: [-3.427875969475136 -0.3681130581127157 … -0.27009455276541644 0.034858345646235266; -2.340152421001668 -0.9847275359478632 … 0.05455266164235382 -0.03931906605982404; … ; -7.848514385873149 0.32794682429551364 … -0.046209888735552714 0.13153226113631308; -3.365609685045601 -0.1820291334211271 … 0.2333390950867184 0.1224511794446198] == [-3.4278759694751355 -0.3681130581127184 … 0.2700945527654145 0.03485834564625251; -2.3401524210016684 -0.9847275359478577 … -0.05455266164235081 -0.039319066059829454; … ; -7.84851438587315 0.3279468242955179 … 0.046209888735541424 0.13153226113632174; -3.3656096850456017 -0.18202913342112848 … -0.23333909508673017 0.12245117944461675] Stacktrace: [1] top-level scope @ ~/.julia/packages/MLJMultivariateStatsInterface/dIha1/test/models/decomposition_models.jl:4 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined] [3] macro expansion @ ~/.julia/packages/MLJMultivariateStatsInterface/dIha1/test/models/decomposition_models.jl:24 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined] Test Summary: | Pass Fail Total Time PCA | 6 4 10 13.7s RNG of the outermost testset: Random.Xoshiro(0xaf72e6c09cc27be9, 0x574665f5b6d1b757, 0xfd93c1a407b8c8e8, 0x23a9f2566702452c, 0xa2ce8132b8e372aa) ERROR: LoadError: Some tests did not pass: 6 passed, 4 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MLJMultivariateStatsInterface/dIha1/test/models/decomposition_models.jl:3 in expression starting at /home/pkgeval/.julia/packages/MLJMultivariateStatsInterface/dIha1/test/runtests.jl:18 Testing failed after 157.3s ERROR: LoadError: Package MLJMultivariateStatsInterface errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3067 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2916 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval failed after 205.18s: package has test failures