Package evaluation to test GraphNeuralNetworks on Julia 1.14.0-DEV.1475 (42ad41c179*) started at 2026-01-04T20:38:25.045


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 9.13s


################################################################################
# Installation
#

Installing GraphNeuralNetworks...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [cffab07f] + GraphNeuralNetworks v1.1.0
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [621f4979] + AbstractFFTs v1.5.0
  [1520ce14] + AbstractTrees v0.4.5
  [7d9f7c33] + Accessors v0.1.43
  [79e6a3ab] + Adapt v4.4.0
  [66dad0bd] + AliasTables v1.1.3
  [dce04be8] + ArgCheck v2.5.0
  [ec485272] + ArnoldiMethod v0.4.0
  [a9b6321e] + Atomix v1.1.2
  [198e06fe] + BangBang v0.4.6
  [9718e550] + Baselet v0.1.1
  [082447d4] + ChainRules v1.72.6
  [d360d2e6] + ChainRulesCore v1.26.0
  [bbf7d656] + CommonSubexpressions v0.3.1
  [34da2185] + Compat v4.18.1
  [a33af91c] + CompositionsBase v0.1.2
  [2569d6c7] + ConcreteStructs v0.2.3
  [187b0558] + ConstructionBase v1.6.0
  [6add18c4] + ContextVariablesX v0.1.3
  [9a962f9c] + DataAPI v1.16.0
⌅ [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [244e2a9f] + DefineSingletons v0.1.2
  [8bb1440f] + DelimitedFiles v1.9.1
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [b4f34e82] + Distances v0.10.12
  [ffbed154] + DocStringExtensions v0.9.5
  [f151be2c] + EnzymeCore v0.8.17
  [cc61a311] + FLoops v0.2.2
  [b9860ae5] + FLoopsBase v0.1.1
  [1a297f60] + FillArrays v1.15.0
  [587475ba] + Flux v0.16.7
  [f6369f11] + ForwardDiff v1.3.1
  [d9f16b24] + Functors v0.5.2
  [aed8fd31] + GNNGraphs v1.5.0
  [a6a84749] + GNNlib v1.1.0
  [46192b85] + GPUArraysCore v0.2.0
  [cffab07f] + GraphNeuralNetworks v1.1.0
⌃ [86223c79] + Graphs v1.13.1
  [076d061b] + HashArrayMappedTries v0.2.0
  [7869d1d1] + IRTools v0.4.15
  [d25df0c9] + Inflate v0.1.5
  [22cec73e] + InitialValues v0.3.1
  [3587e190] + InverseFunctions v0.1.17
  [92d709cd] + IrrationalConstants v0.2.6
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.1
  [b14d175d] + JuliaVariables v0.2.4
  [63c18a36] + KernelAbstractions v0.9.39
⌅ [0b1a1467] + KrylovKit v0.9.5
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [c2834f40] + MLCore v1.0.0
  [7e8f7934] + MLDataDevices v1.16.0
  [d8e11817] + MLStyle v0.4.17
  [f1d291b0] + MLUtils v0.4.8
  [1914dd2f] + MacroTools v0.5.16
  [128add7d] + MicroCollections v0.2.0
  [e1d29d7a] + Missings v1.2.0
  [872c559c] + NNlib v0.9.32
  [77ba4419] + NaNMath v1.1.3
  [71a1bf82] + NameResolution v0.1.5
  [b8a86587] + NearestNeighbors v0.4.26
  [0b1bfda6] + OneHotArrays v0.2.10
  [3bd65402] + Optimisers v0.4.7
  [bac558e1] + OrderedCollections v1.8.1
  [65ce6f38] + PackageExtensionCompat v1.0.2
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.1
  [8162dcfd] + PrettyPrint v0.2.0
  [33c8b6b6] + ProgressLogging v0.1.6
  [43287f4e] + PtrArrays v1.3.0
  [c1ae055f] + RealDot v0.1.0
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [431bcebd] + SciMLPublic v1.0.1
  [7e506255] + ScopedValues v1.5.0
  [efcf1570] + Setfield v1.1.2
  [605ecd9f] + ShowCases v0.1.0
  [699a6c99] + SimpleTraits v0.9.5
  [a2af1166] + SortingAlgorithms v1.2.2
  [dc90abb0] + SparseInverseSubset v0.1.2
  [276daf66] + SpecialFunctions v2.6.1
  [171d559e] + SplittablesBase v0.1.15
  [90137ffa] + StaticArrays v1.9.16
  [1e83bf80] + StaticArraysCore v1.4.4
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.8.0
  [2913bbd2] + StatsBase v0.34.9
  [09ab397b] + StructArrays v0.7.2
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [28d57a85] + Transducers v0.4.85
  [013be700] + UnsafeAtomics v0.3.0
  [409d34a3] + VectorInterface v0.5.0
  [e88e6eb3] + Zygote v0.7.10
  [700de1a5] + ZygoteRules v0.2.7
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.13.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [8e850b90] + libblastrampoline_jll v5.15.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 5.36s


################################################################################
# Precompilation
#

ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:10
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:585
in expression starting at /PkgEval.jl/scripts/precompile.jl:6

caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:7
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:585

Precompilation failed after 12.08s



################################################################################
# Testing
#

     Testing GraphNeuralNetworks

Testing failed after 3.8s

ERROR: LoadError: expected package `GNNlib [a6a84749]` to exist at path `/home/pkgeval/.julia/packages/GraphNeuralNetworks/GNNlib`

This package is referenced in the manifest file: /tmp/jl_Z7Az4M/Manifest.toml
It is required by: GraphNeuralNetworks
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] collect_fixed!(env::Pkg.Types.EnvCache, pkgs::Vector{PackageSpec}, names::Dict{UUID, String}, julia_version::VersionNumber)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:678
  [3] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{PackageSpec}, julia_version::VersionNumber, installed_only::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:787
  [4] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}, level::UpgradeLevel; skip_writing_project::Bool, preserve::Nothing)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2491
  [5] up
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2465 [inlined]
  [6] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; level::UpgradeLevel, mode::PackageMode, preserve::Nothing, update_registry::Bool, skip_writing_project::Bool, kwargs::@Kwargs{io::Base.DevNull})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:465
  [7] up
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:433 [inlined]
  [8] up
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:177 [inlined]
  [9] #resolve#170
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:471 [inlined]
 [10] resolve
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:470 [inlined]
 [11] (::Pkg.Operations.var"#216#217"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#231#232"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec})()
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2815
 [12] with_temp_env(fn::Pkg.Operations.var"#216#217"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#231#232"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec}, temp_env::String)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2685
 [13] (::Pkg.Operations.var"#212#213"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#231#232"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec, String, String})(tmp::String)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2799
 [14] mktempdir(fn::Pkg.Operations.var"#212#213"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#231#232"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec, String, String}, parent::String; prefix::String)
    @ Base.Filesystem ./file.jl:936
 [15] mktempdir(fn::Function, parent::String)
    @ Base.Filesystem ./file.jl:932
 [16] sandbox(fn::Function, ctx::Pkg.Types.Context, target::PackageSpec, sandbox_path::String, sandbox_project_override::Nothing; preferences::Dict{String, Any}, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2746
 [17] kwcall(::@NamedTuple{preferences::Dict{String, Any}, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool}, ::typeof(Pkg.Operations.sandbox), fn::Function, ctx::Pkg.Types.Context, target::PackageSpec, sandbox_path::String, sandbox_project_override::Nothing)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2736
 [18] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3010
 [19] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2916 [inlined]
 [20] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572
 [21] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548
 [22] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
 [23] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161
 [24] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
 [25] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined]
 [26] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159
 [27] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:237
 [28] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [29] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [30] _start()
    @ Base ./client.jl:585
in expression starting at /PkgEval.jl/scripts/evaluate.jl:228

PkgEval failed after 126.99s: there were unidentified errors