Package evaluation to test EffectSizes on Julia 1.14.0-DEV.1475 (42ad41c179*) started at 2026-01-04T15:55:03.425


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 10.02s


################################################################################
# Installation
#

Installing EffectSizes...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [e248de7e] + EffectSizes v1.0.1
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [66dad0bd] + AliasTables v1.1.3
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.19.3
  [31c24e10] + Distributions v0.25.122
  [ffbed154] + DocStringExtensions v0.9.5
  [e248de7e] + EffectSizes v1.0.1
  [1a297f60] + FillArrays v1.15.0
  [34004b35] + HypergeometricFunctions v0.3.28
  [92d709cd] + IrrationalConstants v0.2.6
  [692b3bcd] + JLLWrappers v1.7.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e1d29d7a] + Missings v1.2.0
  [bac558e1] + OrderedCollections v1.8.1
  [90014a1f] + PDMats v0.11.37
  [21216c6a] + Preferences v1.5.1
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [189a3867] + Reexport v1.2.2
  [79098fc4] + Rmath v0.9.0
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.6.1
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.8.0
  [2913bbd2] + StatsBase v0.34.9
  [4c63d2b9] + StatsFuns v1.5.2
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [56f22d72] + Artifacts v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [8e850b90] + libblastrampoline_jll v5.15.0+0

Installation completed after 5.17s


################################################################################
# Precompilation
#

ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:10
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:585
in expression starting at /PkgEval.jl/scripts/precompile.jl:6

caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:7
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:585

Precompilation failed after 13.97s



################################################################################
# Testing
#

     Testing EffectSizes
      Status `/tmp/jl_jeXNDi/Project.toml`
  [31c24e10] Distributions v0.25.122
  [e30172f5] Documenter v1.16.1
  [e248de7e] EffectSizes v1.0.1
  [276daf66] SpecialFunctions v2.6.1
  [10745b16] Statistics v1.11.1
  [2913bbd2] StatsBase v0.34.9
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_jeXNDi/Manifest.toml`
  [a4c015fc] ANSIColoredPrinters v0.0.1
  [1520ce14] AbstractTrees v0.4.5
  [66dad0bd] AliasTables v1.1.3
  [944b1d66] CodecZlib v0.7.8
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.19.3
  [31c24e10] Distributions v0.25.122
  [ffbed154] DocStringExtensions v0.9.5
  [e30172f5] Documenter v1.16.1
  [e248de7e] EffectSizes v1.0.1
  [1a297f60] FillArrays v1.15.0
  [d7ba0133] Git v1.5.0
  [34004b35] HypergeometricFunctions v0.3.28
  [b5f81e59] IOCapture v1.0.0
  [92d709cd] IrrationalConstants v0.2.6
  [692b3bcd] JLLWrappers v1.7.1
  [682c06a0] JSON v1.3.0
  [0e77f7df] LazilyInitializedFields v1.3.0
  [2ab3a3ac] LogExpFunctions v0.3.29
  [d0879d2d] MarkdownAST v0.1.2
  [e1d29d7a] Missings v1.2.0
  [bac558e1] OrderedCollections v1.8.1
  [90014a1f] PDMats v0.11.37
  [69de0a69] Parsers v2.8.3
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.1
  [43287f4e] PtrArrays v1.3.0
  [1fd47b50] QuadGK v2.11.2
  [189a3867] Reexport v1.2.2
  [2792f1a3] RegistryInstances v0.1.0
  [79098fc4] Rmath v0.9.0
  [a2af1166] SortingAlgorithms v1.2.2
  [276daf66] SpecialFunctions v2.6.1
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.8.0
  [2913bbd2] StatsBase v0.34.9
  [4c63d2b9] StatsFuns v1.5.2
  [ec057cc2] StructUtils v2.6.0
  [3bb67fe8] TranscodingStreams v0.11.3
  [2e619515] Expat_jll v2.7.3+0
  [020c3dae] Git_LFS_jll v3.7.0+0
  [f8c6e375] Git_jll v2.52.0+0
  [94ce4f54] Libiconv_jll v1.18.0+0
  [9bd350c2] OpenSSH_jll v10.2.1+0
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [b27032c2] LibCURL v1.0.0
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.14.0
  [de0858da] Printf v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.13.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.17.0+0
  [e37daf67] LibGit2_jll v1.9.2+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.12.2
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.7+0
  [458c3c95] OpenSSL_jll v3.5.4+0
  [efcefdf7] PCRE2_jll v10.47.0+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [83775a58] Zlib_jll v1.3.1+2
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850b90] libblastrampoline_jll v5.15.0+0
  [8e850ede] nghttp2_jll v1.68.0+1
  [3f19e933] p7zip_jll v17.7.0+0
     Testing Running tests...
┌ Warning: Replacing docs for `EffectSizes.EffectSizes :: Union{}` in module `EffectSizes`
└ @ Base.Docs docs/Docs.jl:253
┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master".
│ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error.
│ Unless this is due to a configuration error, the relevant variable should be set explicitly.
└ @ Documenter ~/.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl:680
[ Info: SetupBuildDirectory: setting up build directory.
[ Info: Doctest: running doctests.
┌ Error: doctest failure in ../src/EffectSizes.jl
│ 
│ ```jldoctest
│ julia> using Random, EffectSizes; Random.seed!(1);
│ 
│ julia> xs = randn(10^3);
│ 
│ julia> ys = randn(10^3) .+ 0.5;
│ 
│ julia> es = CohenD(xs, ys, quantile=0.95); # normal CI (idealised distribution)
│ 
│ julia> typeof(es)
│ CohenD{Float64, ConfidenceInterval{Float64}}
│ 
│ julia> effectsize(es)
│ -0.5035709742336323
│ 
│ julia> quantile(es)
│ 0.95
│ 
│ julia> ci = confint(es);
│ 
│ julia> typeof(ci)
│ ConfidenceInterval{Float64}
│ 
│ julia> confint(ci)
│ (-0.5926015897640895, -0.41454035870317507)
│ 
│ julia> es = CohenD(xs, ys, 10^4, quantile=0.95); # bootstrap CI (empirical distribution)
│ 
│ julia> effectsize(es) # effect size is the same
│ -0.5035709742336323
│ 
│ julia> typeof(es)
│ CohenD{Float64, BootstrapConfidenceInterval{Float64}}
│ 
│ julia> ci = confint(es); # confidence interval is different
│ 
│ julia> lower(ci)
│ -0.5919535584593746
│ 
│ julia> upper(ci)
│ -0.4155997394380884
│ ```
│ 
│ Subexpression:
│ 
│ effectsize(es)
│ 
│ Evaluated output:
│ 
│ -0.5035709742336318
│ 
│ Expected output:
│ 
│ -0.5035709742336323
│ 
│   diff =
│    Warning: Diff output requires color.
│    -0.5035709742336323-0.5035709742336318
└ @ Documenter ~/.julia/packages/EffectSizes/9JZmF/src/EffectSizes.jl
┌ Error: doctest failure in ../src/EffectSizes.jl
│ 
│ ```jldoctest
│ julia> using Random, EffectSizes; Random.seed!(1);
│ 
│ julia> xs = randn(10^3);
│ 
│ julia> ys = randn(10^3) .+ 0.5;
│ 
│ julia> es = CohenD(xs, ys, quantile=0.95); # normal CI (idealised distribution)
│ 
│ julia> typeof(es)
│ CohenD{Float64, ConfidenceInterval{Float64}}
│ 
│ julia> effectsize(es)
│ -0.5035709742336323
│ 
│ julia> quantile(es)
│ 0.95
│ 
│ julia> ci = confint(es);
│ 
│ julia> typeof(ci)
│ ConfidenceInterval{Float64}
│ 
│ julia> confint(ci)
│ (-0.5926015897640895, -0.41454035870317507)
│ 
│ julia> es = CohenD(xs, ys, 10^4, quantile=0.95); # bootstrap CI (empirical distribution)
│ 
│ julia> effectsize(es) # effect size is the same
│ -0.5035709742336323
│ 
│ julia> typeof(es)
│ CohenD{Float64, BootstrapConfidenceInterval{Float64}}
│ 
│ julia> ci = confint(es); # confidence interval is different
│ 
│ julia> lower(ci)
│ -0.5919535584593746
│ 
│ julia> upper(ci)
│ -0.4155997394380884
│ ```
│ 
│ Subexpression:
│ 
│ confint(ci)
│ 
│ Evaluated output:
│ 
│ (-0.592601589764089, -0.4145403587031746)
│ 
│ Expected output:
│ 
│ (-0.5926015897640895, -0.41454035870317507)
│ 
│   diff =
│    Warning: Diff output requires color.
│    (-0.5926015897640895, -0.41454035870317507)(-0.592601589764089, -0.4145403587031746)
└ @ Documenter ~/.julia/packages/EffectSizes/9JZmF/src/EffectSizes.jl
┌ Error: doctest failure in ../src/EffectSizes.jl
│ 
│ ```jldoctest
│ julia> using Random, EffectSizes; Random.seed!(1);
│ 
│ julia> xs = randn(10^3);
│ 
│ julia> ys = randn(10^3) .+ 0.5;
│ 
│ julia> es = CohenD(xs, ys, quantile=0.95); # normal CI (idealised distribution)
│ 
│ julia> typeof(es)
│ CohenD{Float64, ConfidenceInterval{Float64}}
│ 
│ julia> effectsize(es)
│ -0.5035709742336323
│ 
│ julia> quantile(es)
│ 0.95
│ 
│ julia> ci = confint(es);
│ 
│ julia> typeof(ci)
│ ConfidenceInterval{Float64}
│ 
│ julia> confint(ci)
│ (-0.5926015897640895, -0.41454035870317507)
│ 
│ julia> es = CohenD(xs, ys, 10^4, quantile=0.95); # bootstrap CI (empirical distribution)
│ 
│ julia> effectsize(es) # effect size is the same
│ -0.5035709742336323
│ 
│ julia> typeof(es)
│ CohenD{Float64, BootstrapConfidenceInterval{Float64}}
│ 
│ julia> ci = confint(es); # confidence interval is different
│ 
│ julia> lower(ci)
│ -0.5919535584593746
│ 
│ julia> upper(ci)
│ -0.4155997394380884
│ ```
│ 
│ Subexpression:
│ 
│ effectsize(es) # effect size is the same
│ 
│ Evaluated output:
│ 
│ -0.5035709742336318
│ 
│ Expected output:
│ 
│ -0.5035709742336323
│ 
│   diff =
│    Warning: Diff output requires color.
│    -0.5035709742336323-0.5035709742336318
└ @ Documenter ~/.julia/packages/EffectSizes/9JZmF/src/EffectSizes.jl
┌ Error: Doctesting failed
│   exception =
│    `makedocs` encountered a doctest error. Terminating build
│    Stacktrace:
│      [1] error(s::String)
│        @ Base ./error.jl:44
│      [2] runner(::Type{Documenter.Builder.Doctest}, doc::Documenter.Document)
│        @ Documenter ~/.julia/packages/Documenter/xvqbW/src/builder_pipeline.jl:213
│      [3] dispatch(::Type{Documenter.Builder.DocumentPipeline}, x::Documenter.Document)
│        @ Documenter.Selectors ~/.julia/packages/Documenter/xvqbW/src/utilities/Selectors.jl:170
│      [4] #89
│        @ ~/.julia/packages/Documenter/xvqbW/src/makedocs.jl:283 [inlined]
│      [5] withenv(::Documenter.var"#89#90"{Documenter.Document}, ::Pair{String, Nothing}, ::Vararg{Pair{String, Nothing}})
│        @ Base ./env.jl:265
│      [6] #87
│        @ ~/.julia/packages/Documenter/xvqbW/src/makedocs.jl:282 [inlined]
│      [7] cd(f::Documenter.var"#87#88"{Documenter.Document}, dir::String)
│        @ Base.Filesystem ./file.jl:112
│      [8] makedocs(; debug::Bool, format::Documenter.HTMLWriter.HTML, kwargs::@Kwargs{root::String, source::String, sitename::String, doctest::Symbol, modules::Vector{Module}, doctestfilters::Vector{Regex}, remotes::Nothing, plugins::Vector{Documenter.Plugin}})
│        @ Documenter ~/.julia/packages/Documenter/xvqbW/src/makedocs.jl:281
│      [9] kwcall(::@NamedTuple{root::String, source::String, sitename::String, doctest::Symbol, modules::Vector{Module}, doctestfilters::Vector{Regex}, remotes::Nothing, plugins::Vector{Documenter.Plugin}}, ::typeof(makedocs))
│        @ Documenter ~/.julia/packages/Documenter/xvqbW/src/makedocs.jl:274
│     [10] (::Documenter.var"#all_doctests#141"{Bool, Vector{Regex}, Vector{Documenter.Plugin}, Vector{Module}})()
│        @ Documenter ~/.julia/packages/Documenter/xvqbW/src/doctest.jl:85
│     [11] macro expansion
│        @ ~/.julia/packages/Documenter/xvqbW/src/doctest.jl:110 [inlined]
│     [12] macro expansion
│        @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:770 [inlined]
│     [13] macro expansion
│        @ ~/.julia/packages/Documenter/xvqbW/src/doctest.jl:110 [inlined]
│     [14] macro expansion
│        @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined]
│     [15] doctest(source::String, modules::Vector{Module}; fix::Bool, testset::String, doctestfilters::Vector{Regex}, plugins::Vector{Documenter.Plugin})
│        @ Documenter ~/.julia/packages/Documenter/xvqbW/src/doctest.jl:110
│     [16] doctest
│        @ ~/.julia/packages/Documenter/xvqbW/src/doctest.jl:69 [inlined]
│     [17] doctest(package::Module; manual::Bool, testset::Nothing, kwargs::@Kwargs{})
│        @ Documenter ~/.julia/packages/Documenter/xvqbW/src/doctest.jl:37
│     [18] doctest(package::Module)
│        @ Documenter ~/.julia/packages/Documenter/xvqbW/src/doctest.jl:20
│     [19] top-level scope
│        @ ~/.julia/packages/EffectSizes/9JZmF/test/runtests.jl:15
│     [20] include(mapexpr::Function, mod::Module, _path::String)
│        @ Base ./Base.jl:310
│     [21] top-level scope
│        @ none:6
│     [22] eval(m::Module, e::Any)
│        @ Core ./boot.jl:489
│     [23] exec_options(opts::Base.JLOptions)
│        @ Base ./client.jl:310
│     [24] _start()
│        @ Base ./client.jl:585
└ @ Documenter ~/.julia/packages/Documenter/xvqbW/src/doctest.jl:99

Doctests: EffectSizes: Test Failed at /home/pkgeval/.julia/packages/Documenter/xvqbW/src/doctest.jl:110
  Expression: all_doctests()
  Stacktrace:
   [1] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:773 [inlined]
   [2] macro expansion
     @ ~/.julia/packages/Documenter/xvqbW/src/doctest.jl:110 [inlined]
   [3] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1995 [inlined]
   [4] doctest(source::String, modules::Vector{Module}; fix::Bool, testset::String, doctestfilters::Vector{Regex}, plugins::Vector{Documenter.Plugin})
     @ Documenter ~/.julia/packages/Documenter/xvqbW/src/doctest.jl:110
Test Summary:         | Fail  Total   Time
Doctests: EffectSizes |    1      1  25.0s
RNG of the outermost testset: Random.Xoshiro(0x475e2e66d1bc06f9, 0xa367102acace9874, 0xc07d5c8617add12e, 0x8d5ab008de3adb8d, 0xd180fdc3bc28e716)
ERROR: LoadError: Some tests did not pass: 0 passed, 1 failed, 0 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/EffectSizes/9JZmF/test/runtests.jl:13

Testing failed after 87.73s

ERROR: LoadError: Package EffectSizes errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3067
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2916 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:237
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [14] _start()
    @ Base ./client.jl:585
in expression starting at /PkgEval.jl/scripts/evaluate.jl:228

PkgEval failed after 135.07s: package has test failures