Package evaluation to test DCEMRI on Julia 1.14.0-DEV.1475 (42ad41c179*) started at 2026-01-04T21:08:02.676 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 10.5s ################################################################################ # Installation # Installing DCEMRI... Resolving package versions... Installed Rmath_jll ──────────────── v0.5.1+0 Installed Adapt ──────────────────── v4.4.0 Installed DiffResults ────────────── v1.1.0 Installed MacroTools ─────────────── v0.5.16 Installed VersionParsing ─────────── v1.3.0 Installed ForwardDiff ────────────── v0.10.39 Installed FillArrays ─────────────── v1.15.0 Installed DataStructures ─────────── v0.18.22 Installed Calculus ───────────────── v0.5.2 Installed libaec_jll ─────────────── v1.1.4+0 Installed MPICH_jll ──────────────── v4.3.2+0 Installed ConstructionBase ───────── v1.6.0 Installed HypergeometricFunctions ── v0.3.28 Installed CodecZlib ──────────────── v0.7.8 Installed AliasTables ────────────── v1.1.3 Installed StatsBase ──────────────── v0.33.21 Installed TranscodingStreams ─────── v0.11.3 Installed ArrayInterface ─────────── v7.22.0 Installed MicrosoftMPI_jll ───────── v10.1.4+3 Installed OrderedCollections ─────── v1.8.1 Installed Compat ─────────────────── v4.18.1 Installed DataAPI ────────────────── v1.16.0 Installed Statistics ─────────────── v1.11.1 Installed Xorg_libpciaccess_jll ──── v0.18.1+0 Installed StatsAPI ───────────────── v1.8.0 Installed PrecompileTools ────────── v1.3.3 Installed Conda ──────────────────── v1.10.3 Installed CommonSubexpressions ───── v0.3.1 Installed TextWrap ───────────────── v1.0.2 Installed Colors ─────────────────── v0.13.1 Installed StaticArraysCore ───────── v1.4.4 Installed LsqFit ─────────────────── v0.12.1 Installed PyPlot ─────────────────── v2.11.6 Installed StructUtils ────────────── v2.6.0 Installed IrrationalConstants ────── v0.2.6 Installed OpenSpecFun_jll ────────── v0.5.6+0 Installed QuadGK ─────────────────── v2.11.2 Installed NaNMath ────────────────── v1.1.3 Installed ColorTypes ─────────────── v0.12.1 Installed Requires ───────────────── v1.3.1 Installed ArgParse ───────────────── v1.2.0 Installed PyCall ─────────────────── v1.96.4 Installed HDF5_jll ───────────────── v1.14.6+0 Installed OpenMPI_jll ────────────── v5.0.9+0 Installed DiffRules ──────────────── v1.15.1 Installed BufferedStreams ────────── v1.2.2 Installed LogExpFunctions ────────── v0.3.29 Installed JSON ───────────────────── v1.3.0 Installed Hwloc_jll ──────────────── v2.12.2+0 Installed Parsers ────────────────── v2.8.3 Installed FiniteDiff ─────────────── v2.29.0 Installed Rmath ──────────────────── v0.9.0 Installed StatsFuns ──────────────── v1.5.2 Installed PtrArrays ──────────────── v1.3.0 Installed Distributions ──────────── v0.25.122 Installed XML2_jll ───────────────── v2.13.9+0 Installed NLSolversBase ──────────── v7.10.0 Installed Setfield ───────────────── v1.1.2 Installed Reexport ───────────────── v1.2.2 Installed SpecialFunctions ───────── v2.6.1 Installed FixedPointNumbers ──────── v0.8.5 Installed Missings ───────────────── v1.2.0 Installed Preferences ────────────── v1.5.1 Installed MPIPreferences ─────────── v0.1.11 Installed JLLWrappers ────────────── v1.7.1 Installed Libiconv_jll ───────────── v1.18.0+0 Installed LaTeXStrings ───────────── v1.4.0 Installed OptimBase ──────────────── v2.0.2 Installed PDMats ─────────────────── v0.11.35 Installed SortingAlgorithms ──────── v1.2.2 Installed MAT ────────────────────── v0.10.7 Installed HDF5 ───────────────────── v0.17.2 Installed MPItrampoline_jll ──────── v5.5.4+0 Installed ADTypes ────────────────── v1.21.0 Installed DocStringExtensions ────── v0.9.5 Installed DifferentiationInterface ─ v0.7.13 Installed DCEMRI ─────────────────── v0.2.4 Installing 9 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Xorg_libpciaccess 24.8 KiB Installed artifact libaec 49.6 KiB Installed artifact Rmath 121.9 KiB Installed artifact Libiconv 1.9 MiB Installed artifact XML2 2.5 MiB Installed artifact Hwloc 3.5 MiB Installed artifact MPICH 3.3 MiB Installed artifact HDF5 5.7 MiB Updating `~/.julia/environments/v1.14/Project.toml` [2b3899e7] + DCEMRI v0.2.4 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [c7e460c6] + ArgParse v1.2.0 [4fba245c] + ArrayInterface v7.22.0 [e1450e63] + BufferedStreams v1.2.2 [49dc2e85] + Calculus v0.5.2 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [8f4d0f93] + Conda v1.10.3 [187b0558] + ConstructionBase v1.6.0 [2b3899e7] + DCEMRI v0.2.4 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.13 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.15.0 [6a86dc24] + FiniteDiff v2.29.0 [53c48c17] + FixedPointNumbers v0.8.5 ⌅ [f6369f11] + ForwardDiff v0.10.39 [f67ccb44] + HDF5 v0.17.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.3.0 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 ⌅ [2fda8390] + LsqFit v0.12.1 ⌅ [23992714] + MAT v0.10.7 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [87e2bd06] + OptimBase v2.0.2 [bac558e1] + OrderedCollections v1.8.1 ⌃ [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [43287f4e] + PtrArrays v1.3.0 [438e738f] + PyCall v1.96.4 [d330b81b] + PyPlot v2.11.6 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.2 [ec057cc2] + StructUtils v2.6.0 [b718987f] + TextWrap v1.0.2 [3bb67fe8] + TranscodingStreams v0.11.3 [81def892] + VersionParsing v1.3.0 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] + libaec_jll v1.1.4+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log` Building PyCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log` Installation completed after 130.81s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 Precompilation failed after 14.02s ################################################################################ # Testing # Testing DCEMRI Status `/tmp/jl_HzTAdh/Project.toml` [c7e460c6] ArgParse v1.2.0 [49dc2e85] Calculus v0.5.2 [2b3899e7] DCEMRI v0.2.4 ⌅ [2fda8390] LsqFit v0.12.1 ⌅ [23992714] MAT v0.10.7 [d330b81b] PyPlot v2.11.6 [10745b16] Statistics v1.11.1 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_HzTAdh/Manifest.toml` [47edcb42] ADTypes v1.21.0 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [c7e460c6] ArgParse v1.2.0 [4fba245c] ArrayInterface v7.22.0 [e1450e63] BufferedStreams v1.2.2 [49dc2e85] Calculus v0.5.2 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [8f4d0f93] Conda v1.10.3 [187b0558] ConstructionBase v1.6.0 [2b3899e7] DCEMRI v0.2.4 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.13 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [1a297f60] FillArrays v1.15.0 [6a86dc24] FiniteDiff v2.29.0 [53c48c17] FixedPointNumbers v0.8.5 ⌅ [f6369f11] ForwardDiff v0.10.39 [f67ccb44] HDF5 v0.17.2 [34004b35] HypergeometricFunctions v0.3.28 [92d709cd] IrrationalConstants v0.2.6 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.3.0 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 ⌅ [2fda8390] LsqFit v0.12.1 ⌅ [23992714] MAT v0.10.7 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [87e2bd06] OptimBase v2.0.2 [bac558e1] OrderedCollections v1.8.1 ⌃ [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [43287f4e] PtrArrays v1.3.0 [438e738f] PyCall v1.96.4 [d330b81b] PyPlot v2.11.6 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [efcf1570] Setfield v1.1.2 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.5.2 [ec057cc2] StructUtils v2.6.0 [b718987f] TextWrap v1.0.2 [3bb67fe8] TranscodingStreams v0.11.3 [81def892] VersionParsing v1.3.0 ⌅ [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.2+0 [94ce4f54] Libiconv_jll v1.18.0+0 [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.9+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] libaec_jll v1.1.4+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for DCEMRI [2b3899e7-9068-5c5c-a4f4-f7d195ee295c] │ exception = Required dependency Base.PkgId(Base.UUID("21216c6a-2e73-6563-6e65-726566657250"), "Preferences") failed to load from a cache file. └ @ Base loading.jl:2950 ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for MAT [23992714-dd62-5051-b70f-ba57cb901cac] │ exception = Required dependency Base.PkgId(Base.UUID("21216c6a-2e73-6563-6e65-726566657250"), "Preferences") failed to load from a cache file. └ @ Base loading.jl:2950 ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for HDF5 [f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f] │ exception = Required dependency Base.PkgId(Base.UUID("21216c6a-2e73-6563-6e65-726566657250"), "Preferences") failed to load from a cache file. └ @ Base loading.jl:2950 ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for PyPlot [d330b81b-6aea-500a-939a-2ce795aea3ee] │ exception = Required dependency Base.PkgId(Base.UUID("81def892-9a0e-5fdd-b105-ffc91e053289"), "VersionParsing") failed to load from a cache file. └ @ Base loading.jl:2950 ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for PyCall [438e738f-606a-5dbb-bf0a-cddfbfd45ab0] │ exception = Required dependency Base.PkgId(Base.UUID("81def892-9a0e-5fdd-b105-ffc91e053289"), "VersionParsing") failed to load from a cache file. └ @ Base loading.jl:2950 ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for Conda [8f4d0f93-b110-5947-807f-2305c1781a2d] │ exception = Required dependency Base.PkgId(Base.UUID("ec057cc2-7a8d-4b58-b3b3-92acb9f63b42"), "StructUtils") failed to load from a cache file. └ @ Base loading.jl:2950 ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for JSON [682c06a0-de6a-54ab-a142-c8b1cf79cde6] │ exception = Required dependency Base.PkgId(Base.UUID("ec057cc2-7a8d-4b58-b3b3-92acb9f63b42"), "StructUtils") failed to load from a cache file. └ @ Base loading.jl:2950 [ Info: Installing matplotlib via the Conda matplotlib package... [ Info: Running `conda install -q -y matplotlib` in root environment Channels: - conda-forge Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/pkgeval/.julia/conda/3/x86_64 added / updated specs: - matplotlib The following packages will be downloaded: package | build ---------------------------|----------------- alsa-lib-1.2.15.1 | hb03c661_0 572 KB conda-forge brotli-1.2.0 | hed03a55_1 20 KB conda-forge brotli-bin-1.2.0 | hb03c661_1 21 KB conda-forge cairo-1.18.4 | he90730b_1 966 KB conda-forge contourpy-1.3.3 | py312hd9148b4_3 288 KB conda-forge cycler-0.12.1 | pyhcf101f3_2 14 KB conda-forge cyrus-sasl-2.1.28 | hd9c7081_0 205 KB conda-forge dbus-1.16.2 | h24cb091_1 437 KB conda-forge double-conversion-3.4.0 | hecca717_0 70 KB conda-forge font-ttf-dejavu-sans-mono-2.37| hab24e00_0 388 KB conda-forge font-ttf-inconsolata-3.000 | h77eed37_0 94 KB conda-forge font-ttf-source-code-pro-2.038| h77eed37_0 684 KB conda-forge font-ttf-ubuntu-0.83 | h77eed37_3 1.5 MB conda-forge fontconfig-2.15.0 | h7e30c49_1 259 KB conda-forge fonts-conda-ecosystem-1 | 0 4 KB conda-forge fonts-conda-forge-1 | hc364b38_1 4 KB conda-forge fonttools-4.61.1 | py312h8a5da7c_0 2.8 MB conda-forge freetype-2.14.1 | ha770c72_0 169 KB conda-forge graphite2-1.3.14 | hecca717_2 97 KB conda-forge harfbuzz-12.3.0 | h6083320_0 2.0 MB conda-forge icu-78.1 | h33c6efd_0 12.1 MB conda-forge kiwisolver-1.4.9 | py312h0a2e395_2 76 KB conda-forge lcms2-2.17 | h717163a_0 242 KB conda-forge lerc-4.0.0 | h0aef613_1 258 KB conda-forge libbrotlicommon-1.2.0 | hb03c661_1 78 KB conda-forge libbrotlidec-1.2.0 | hb03c661_1 34 KB conda-forge libbrotlienc-1.2.0 | hb03c661_1 291 KB conda-forge libclang-cpp21.1-21.1.7 |default_h99862b1_3 20.1 MB conda-forge libclang13-21.1.7 |default_h746c552_3 11.8 MB conda-forge libcups-2.3.3 | hb8b1518_5 4.3 MB conda-forge libdeflate-1.25 | h17f619e_0 72 KB conda-forge libdrm-2.4.125 | hb03c661_1 304 KB conda-forge libegl-1.7.0 | ha4b6fd6_2 44 KB conda-forge libfreetype-2.14.1 | ha770c72_0 7 KB conda-forge libfreetype6-2.14.1 | h73754d4_0 378 KB conda-forge libgl-1.7.0 | ha4b6fd6_2 132 KB conda-forge libglib-2.86.3 | h6548e54_0 3.8 MB conda-forge libglvnd-1.7.0 | ha4b6fd6_2 129 KB conda-forge libglx-1.7.0 | ha4b6fd6_2 74 KB conda-forge libjpeg-turbo-3.1.2 | hb03c661_0 619 KB conda-forge libllvm21-21.1.8 | hf7376ad_0 42.3 MB conda-forge libntlm-1.8 | hb9d3cd8_0 33 KB conda-forge libopengl-1.7.0 | ha4b6fd6_2 50 KB conda-forge libpciaccess-0.18 | hb9d3cd8_0 28 KB conda-forge libpng-1.6.53 | h421ea60_0 310 KB conda-forge libpq-18.1 | hb80d175_3 2.6 MB conda-forge libtiff-4.7.1 | h9d88235_1 425 KB conda-forge libvulkan-loader-1.4.328.1 | h5279c79_0 193 KB conda-forge libwebp-base-1.6.0 | hd42ef1d_0 419 KB conda-forge libxcb-1.17.0 | h8a09558_0 387 KB conda-forge libxkbcommon-1.13.1 | hca5e8e5_0 818 KB conda-forge libxml2-2.15.1 | he237659_1 44 KB conda-forge libxml2-16-2.15.1 | hca6bf5a_1 543 KB conda-forge libxslt-1.1.43 | h711ed8c_1 240 KB conda-forge matplotlib-3.10.8 | py312h7900ff3_0 17 KB conda-forge matplotlib-base-3.10.8 | py312he3d6523_0 8.1 MB conda-forge munkres-1.1.4 | pyhd8ed1ab_1 15 KB conda-forge openjpeg-2.5.4 | h55fea9a_0 347 KB conda-forge openldap-2.6.10 | he970967_0 762 KB conda-forge pcre2-10.47 | haa7fec5_0 1.2 MB conda-forge pillow-12.1.0 | py312h50c33e8_0 1005 KB conda-forge pixman-0.46.4 | h54a6638_1 440 KB conda-forge pthread-stubs-0.4 | hb9d3cd8_1002 8 KB conda-forge pyparsing-3.3.1 | pyhcf101f3_0 108 KB conda-forge pyside6-6.10.1 | py312h9da60e5_0 11.1 MB conda-forge python-dateutil-2.9.0.post0| pyhe01879c_2 228 KB conda-forge qhull-2020.2 | h434a139_5 540 KB conda-forge qt6-main-6.10.1 | hb82b983_4 54.6 MB conda-forge six-1.17.0 | pyhe01879c_1 18 KB conda-forge tornado-6.5.4 | py312h961da02_0 831 KB conda-forge unicodedata2-17.0.0 | py312h4c3975b_1 399 KB conda-forge wayland-1.24.0 | hd6090a7_1 322 KB conda-forge xcb-util-0.4.1 | h4f16b4b_2 20 KB conda-forge xcb-util-cursor-0.1.6 | hb03c661_0 20 KB conda-forge xcb-util-image-0.4.0 | hb711507_2 24 KB conda-forge xcb-util-keysyms-0.4.1 | hb711507_0 14 KB conda-forge xcb-util-renderutil-0.3.10 | hb711507_0 17 KB conda-forge xcb-util-wm-0.4.2 | hb711507_0 50 KB conda-forge xkeyboard-config-2.46 | hb03c661_0 388 KB conda-forge xorg-libice-1.1.2 | hb9d3cd8_0 57 KB conda-forge xorg-libsm-1.2.6 | he73a12e_0 27 KB conda-forge xorg-libx11-1.8.12 | h4f16b4b_0 816 KB conda-forge xorg-libxau-1.0.12 | hb03c661_1 15 KB conda-forge xorg-libxcomposite-0.4.6 | hb9d3cd8_2 13 KB conda-forge xorg-libxcursor-1.2.3 | hb9d3cd8_0 32 KB conda-forge xorg-libxdamage-1.1.6 | hb9d3cd8_0 13 KB conda-forge xorg-libxdmcp-1.1.5 | hb03c661_1 20 KB conda-forge xorg-libxext-1.3.6 | hb9d3cd8_0 49 KB conda-forge xorg-libxfixes-6.0.2 | hb03c661_0 20 KB conda-forge xorg-libxi-1.8.2 | hb9d3cd8_0 46 KB conda-forge xorg-libxrandr-1.5.4 | hb9d3cd8_0 29 KB conda-forge xorg-libxrender-0.9.12 | hb9d3cd8_0 32 KB conda-forge xorg-libxtst-1.2.5 | hb9d3cd8_3 32 KB conda-forge xorg-libxxf86vm-1.1.6 | hb9d3cd8_0 17 KB conda-forge zlib-ng-2.3.2 | hceb46e0_1 119 KB conda-forge ------------------------------------------------------------ Total: 195.2 MB The following NEW packages will be INSTALLED: alsa-lib conda-forge/linux-64::alsa-lib-1.2.15.1-hb03c661_0 brotli conda-forge/linux-64::brotli-1.2.0-hed03a55_1 brotli-bin conda-forge/linux-64::brotli-bin-1.2.0-hb03c661_1 cairo conda-forge/linux-64::cairo-1.18.4-he90730b_1 contourpy conda-forge/linux-64::contourpy-1.3.3-py312hd9148b4_3 cycler conda-forge/noarch::cycler-0.12.1-pyhcf101f3_2 cyrus-sasl conda-forge/linux-64::cyrus-sasl-2.1.28-hd9c7081_0 dbus conda-forge/linux-64::dbus-1.16.2-h24cb091_1 double-conversion conda-forge/linux-64::double-conversion-3.4.0-hecca717_0 font-ttf-dejavu-s~ conda-forge/noarch::font-ttf-dejavu-sans-mono-2.37-hab24e00_0 font-ttf-inconsol~ conda-forge/noarch::font-ttf-inconsolata-3.000-h77eed37_0 font-ttf-source-c~ conda-forge/noarch::font-ttf-source-code-pro-2.038-h77eed37_0 font-ttf-ubuntu conda-forge/noarch::font-ttf-ubuntu-0.83-h77eed37_3 fontconfig conda-forge/linux-64::fontconfig-2.15.0-h7e30c49_1 fonts-conda-ecosy~ conda-forge/noarch::fonts-conda-ecosystem-1-0 fonts-conda-forge conda-forge/noarch::fonts-conda-forge-1-hc364b38_1 fonttools conda-forge/linux-64::fonttools-4.61.1-py312h8a5da7c_0 freetype conda-forge/linux-64::freetype-2.14.1-ha770c72_0 graphite2 conda-forge/linux-64::graphite2-1.3.14-hecca717_2 harfbuzz conda-forge/linux-64::harfbuzz-12.3.0-h6083320_0 icu conda-forge/linux-64::icu-78.1-h33c6efd_0 kiwisolver conda-forge/linux-64::kiwisolver-1.4.9-py312h0a2e395_2 lcms2 conda-forge/linux-64::lcms2-2.17-h717163a_0 lerc conda-forge/linux-64::lerc-4.0.0-h0aef613_1 libbrotlicommon conda-forge/linux-64::libbrotlicommon-1.2.0-hb03c661_1 libbrotlidec conda-forge/linux-64::libbrotlidec-1.2.0-hb03c661_1 libbrotlienc conda-forge/linux-64::libbrotlienc-1.2.0-hb03c661_1 libclang-cpp21.1 conda-forge/linux-64::libclang-cpp21.1-21.1.7-default_h99862b1_3 libclang13 conda-forge/linux-64::libclang13-21.1.7-default_h746c552_3 libcups conda-forge/linux-64::libcups-2.3.3-hb8b1518_5 libdeflate conda-forge/linux-64::libdeflate-1.25-h17f619e_0 libdrm conda-forge/linux-64::libdrm-2.4.125-hb03c661_1 libegl conda-forge/linux-64::libegl-1.7.0-ha4b6fd6_2 libfreetype conda-forge/linux-64::libfreetype-2.14.1-ha770c72_0 libfreetype6 conda-forge/linux-64::libfreetype6-2.14.1-h73754d4_0 libgl conda-forge/linux-64::libgl-1.7.0-ha4b6fd6_2 libglib conda-forge/linux-64::libglib-2.86.3-h6548e54_0 libglvnd conda-forge/linux-64::libglvnd-1.7.0-ha4b6fd6_2 libglx conda-forge/linux-64::libglx-1.7.0-ha4b6fd6_2 libjpeg-turbo conda-forge/linux-64::libjpeg-turbo-3.1.2-hb03c661_0 libllvm21 conda-forge/linux-64::libllvm21-21.1.8-hf7376ad_0 libntlm conda-forge/linux-64::libntlm-1.8-hb9d3cd8_0 libopengl conda-forge/linux-64::libopengl-1.7.0-ha4b6fd6_2 libpciaccess conda-forge/linux-64::libpciaccess-0.18-hb9d3cd8_0 libpng conda-forge/linux-64::libpng-1.6.53-h421ea60_0 libpq conda-forge/linux-64::libpq-18.1-hb80d175_3 libtiff conda-forge/linux-64::libtiff-4.7.1-h9d88235_1 libvulkan-loader conda-forge/linux-64::libvulkan-loader-1.4.328.1-h5279c79_0 libwebp-base conda-forge/linux-64::libwebp-base-1.6.0-hd42ef1d_0 libxcb conda-forge/linux-64::libxcb-1.17.0-h8a09558_0 libxkbcommon conda-forge/linux-64::libxkbcommon-1.13.1-hca5e8e5_0 libxslt conda-forge/linux-64::libxslt-1.1.43-h711ed8c_1 matplotlib conda-forge/linux-64::matplotlib-3.10.8-py312h7900ff3_0 matplotlib-base conda-forge/linux-64::matplotlib-base-3.10.8-py312he3d6523_0 munkres conda-forge/noarch::munkres-1.1.4-pyhd8ed1ab_1 openjpeg conda-forge/linux-64::openjpeg-2.5.4-h55fea9a_0 openldap conda-forge/linux-64::openldap-2.6.10-he970967_0 pcre2 conda-forge/linux-64::pcre2-10.47-haa7fec5_0 pillow conda-forge/linux-64::pillow-12.1.0-py312h50c33e8_0 pixman conda-forge/linux-64::pixman-0.46.4-h54a6638_1 pthread-stubs conda-forge/linux-64::pthread-stubs-0.4-hb9d3cd8_1002 pyparsing conda-forge/noarch::pyparsing-3.3.1-pyhcf101f3_0 pyside6 conda-forge/linux-64::pyside6-6.10.1-py312h9da60e5_0 python-dateutil conda-forge/noarch::python-dateutil-2.9.0.post0-pyhe01879c_2 qhull conda-forge/linux-64::qhull-2020.2-h434a139_5 qt6-main conda-forge/linux-64::qt6-main-6.10.1-hb82b983_4 six conda-forge/noarch::six-1.17.0-pyhe01879c_1 tornado conda-forge/linux-64::tornado-6.5.4-py312h961da02_0 unicodedata2 conda-forge/linux-64::unicodedata2-17.0.0-py312h4c3975b_1 wayland conda-forge/linux-64::wayland-1.24.0-hd6090a7_1 xcb-util conda-forge/linux-64::xcb-util-0.4.1-h4f16b4b_2 xcb-util-cursor conda-forge/linux-64::xcb-util-cursor-0.1.6-hb03c661_0 xcb-util-image conda-forge/linux-64::xcb-util-image-0.4.0-hb711507_2 xcb-util-keysyms conda-forge/linux-64::xcb-util-keysyms-0.4.1-hb711507_0 xcb-util-renderut~ conda-forge/linux-64::xcb-util-renderutil-0.3.10-hb711507_0 xcb-util-wm conda-forge/linux-64::xcb-util-wm-0.4.2-hb711507_0 xkeyboard-config conda-forge/linux-64::xkeyboard-config-2.46-hb03c661_0 xorg-libice conda-forge/linux-64::xorg-libice-1.1.2-hb9d3cd8_0 xorg-libsm conda-forge/linux-64::xorg-libsm-1.2.6-he73a12e_0 xorg-libx11 conda-forge/linux-64::xorg-libx11-1.8.12-h4f16b4b_0 xorg-libxau conda-forge/linux-64::xorg-libxau-1.0.12-hb03c661_1 xorg-libxcomposite conda-forge/linux-64::xorg-libxcomposite-0.4.6-hb9d3cd8_2 xorg-libxcursor conda-forge/linux-64::xorg-libxcursor-1.2.3-hb9d3cd8_0 xorg-libxdamage conda-forge/linux-64::xorg-libxdamage-1.1.6-hb9d3cd8_0 xorg-libxdmcp conda-forge/linux-64::xorg-libxdmcp-1.1.5-hb03c661_1 xorg-libxext conda-forge/linux-64::xorg-libxext-1.3.6-hb9d3cd8_0 xorg-libxfixes conda-forge/linux-64::xorg-libxfixes-6.0.2-hb03c661_0 xorg-libxi conda-forge/linux-64::xorg-libxi-1.8.2-hb9d3cd8_0 xorg-libxrandr conda-forge/linux-64::xorg-libxrandr-1.5.4-hb9d3cd8_0 xorg-libxrender conda-forge/linux-64::xorg-libxrender-0.9.12-hb9d3cd8_0 xorg-libxtst conda-forge/linux-64::xorg-libxtst-1.2.5-hb9d3cd8_3 xorg-libxxf86vm conda-forge/linux-64::xorg-libxxf86vm-1.1.6-hb9d3cd8_0 zlib-ng conda-forge/linux-64::zlib-ng-2.3.2-hceb46e0_1 The following packages will be UPDATED: libxml2 2.15.1-h031cc0b_0 --> 2.15.1-he237659_1 libxml2-16 2.15.1-hf2a90c1_0 --> 2.15.1-hca6bf5a_1 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Running analysis of noise-free QIBA v4 data ... running models found multi-flip data fitting R1 relaxation rate to multi-flip data running 6 x 90 points on one CPU core processed 90 voxels in 6.3 s (14.3 vox/s) computing signal enhancement ratios converting DCE signal to effective R1 converting effective R1 to tracer tissue concentration Ct fitting DCE data attempting Extended Tofts-Kety model running 661 x 90 points on one CPU core processed 90 voxels in 1.0 s (88.9 vox/s) Kt RMSE: 7.213202765278294 % errmax: 23.495319754055185 CCC: 0.9998008500579437 ve RMSE: 19.12662154994366 % errmax: 99.99999999999996 CCC: 0.890428265253703 vp RMSE: 24.19610138617728 % errmax: 92.52778323207913 % CCC: 0.9999199032931331 Plotting results ... Running analysis of noisy QIBA v4 data ... running models found multi-flip data fitting R1 relaxation rate to multi-flip data running 6 x 9000 points on one CPU core processed 9000 voxels in 1.5 s (6203.0 vox/s) computing signal enhancement ratios converting DCE signal to effective R1 converting effective R1 to tracer tissue concentration Ct fitting DCE data attempting Extended Tofts-Kety model running 661 x 9000 points on one CPU core processed 9000 voxels in 17.4 s (517.8 vox/s) Kt RMSE: 36.4719221514154 % errmax: 100.0 CCC: 0.9742143068615023 ve RMSE: 40.582847284371674 % errmax: 100.0 CCC: 0.702587185289456 vp RMSE: 49.41983594613706 % errmax: 100.0 % CCC: 0.9717258865917059 Plotting results ... Validation complete. If saved, results can be found in /home/pkgeval/.julia/packages/DCEMRI/2wZOe/src/../test/q4. Test Summary: | Pass Total Time QIBA v4 Extended Tofts Phantom | 6 6 0.8s Running analysis of noise-free QIBA v6 data ... running models found existing R1 map computing signal enhancement ratios converting DCE signal to effective R1 converting effective R1 to tracer tissue concentration Ct fitting DCE data attempting Standard Tofts-Kety model running 1321 x 30 points on one CPU core processed 30 voxels in 0.6 s (53.3 vox/s) Kt RMSE: 0.06905822161593521 % errmax: 0.12117793868526842 CCC: 0.9999992183733076 ve RMSE: 0.08534910726914759 % errmax: 0.23374109636895882 CCC: 0.9999993737019189 Plotting results ... sys:1: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`). Consider using `matplotlib.pyplot.close()`. Running analysis of noisy QIBA v6 data ... running models found existing R1 map computing signal enhancement ratios converting DCE signal to effective R1 converting effective R1 to tracer tissue concentration Ct fitting DCE data attempting Standard Tofts-Kety model running 1321 x 3000 points on one CPU core processed 3000 voxels in 13.1 s (228.2 vox/s) Kt RMSE: 43.20644072466731 % errmax: 100.0 CCC: 0.8536826742097104 ve RMSE: 51.77753159236741 % errmax: 100.0 CCC: 0.8712016262785637 Plotting results ... Validation complete. If saved, results can be found in /home/pkgeval/.julia/packages/DCEMRI/2wZOe/src/../test/q6. Test Summary: | Pass Total Time QIBA v6 Standard Tofts Phantom | 4 4 0.0s Processing in vivo data ... running models found multi-flip data fitting R1 relaxation rate to multi-flip data running 10 x 18326 points on one CPU core processed 18326 voxels in 1.6 s (11757.4 vox/s) computing signal enhancement ratios converting DCE signal to effective R1 converting effective R1 to tracer tissue concentration Ct fitting DCE data attempting Standard Tofts-Kety model running 25 x 6774 points on one CPU core processed 6774 voxels in 2.9 s (2372.1 vox/s) saving results to /home/pkgeval/.julia/packages/DCEMRI/2wZOe/demo/results/results.mat Plotting results ... Results can be found in /home/pkgeval/.julia/packages/DCEMRI/2wZOe/demo/results Demo run complete. Test Summary: | Total Time In-vivo demo | 0 20.0s Testing DCEMRI tests passed Testing completed after 787.86s PkgEval succeeded after 994.78s