Package evaluation to test CellularPotts on Julia 1.14.0-DEV.1475 (42ad41c179*) started at 2026-01-04T23:57:59.026 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 9.5s ################################################################################ # Installation # Installing CellularPotts... Resolving package versions... Installed Qt6Base_jll ────────────────── v6.8.2+2 Installed libass_jll ─────────────────── v0.17.4+0 Installed libaom_jll ─────────────────── v3.13.1+0 Installed Bzip2_jll ──────────────────── v1.0.9+0 Installed HarfBuzz_jll ───────────────── v8.5.1+0 Installed Libtiff_jll ────────────────── v4.7.2+0 Installed Cairo_jll ──────────────────── v1.18.5+0 Installed Libuuid_jll ────────────────── v2.41.2+0 Installed Xorg_libXinerama_jll ───────── v1.1.6+0 Installed Fontconfig_jll ─────────────── v2.17.1+0 Installed fzf_jll ────────────────────── v0.61.1+0 Installed PlotThemes ─────────────────── v3.3.0 Installed libinput_jll ───────────────── v1.28.1+0 Installed NaNMath ────────────────────── v1.1.3 Installed OrderedCollections ─────────── v1.8.1 Installed Graphite2_jll ──────────────── v1.3.15+0 Installed Opus_jll ───────────────────── v1.6.0+0 Installed Ogg_jll ────────────────────── v1.3.6+0 Installed Unzip ──────────────────────── v0.2.0 Installed Tables ─────────────────────── v1.12.1 Installed Reexport ───────────────────── v1.2.2 Installed Xorg_libxcb_jll ────────────── v1.17.1+0 Installed LZO_jll ────────────────────── v2.10.3+0 Installed Preferences ────────────────── v1.5.1 Installed Xorg_xcb_util_wm_jll ───────── v0.4.2+0 Installed FFMPEG ─────────────────────── v0.4.5 Installed LLVMOpenMP_jll ─────────────── v18.1.8+0 Installed RegistryInstances ──────────── v0.1.0 Installed Missings ───────────────────── v1.2.0 Installed TableTraits ────────────────── v1.0.1 Installed LERC_jll ───────────────────── v4.0.1+0 Installed LaTeXStrings ───────────────── v1.4.0 Installed Crayons ────────────────────── v4.1.1 Installed SortingAlgorithms ──────────── v1.2.2 Installed Xorg_libICE_jll ────────────── v1.1.2+0 Installed eudev_jll ──────────────────── v3.2.14+0 Installed Grisu ──────────────────────── v1.0.2 Installed EpollShim_jll ──────────────── v0.0.20230411+1 Installed Format ─────────────────────── v1.3.7 Installed Inflate ────────────────────── v0.1.5 Installed OpenSSH_jll ────────────────── v10.2.1+0 Installed MacroTools ─────────────────── v0.5.16 Installed AbstractTrees ──────────────── v0.4.5 Installed DelimitedFiles ─────────────── v1.9.1 Installed ArnoldiMethod ──────────────── v0.4.0 Installed URIs ───────────────────────── v1.6.1 Installed DataStructures ─────────────── v0.19.3 Installed Xorg_xcb_util_jll ──────────── v0.4.1+0 Installed UnicodeFun ─────────────────── v0.4.1 Installed Xorg_libXau_jll ────────────── v1.0.13+0 Installed Xorg_libXfixes_jll ─────────── v6.0.2+0 Installed mtdev_jll ──────────────────── v1.1.7+0 Installed CodecZlib ──────────────────── v0.7.8 Installed x264_jll ───────────────────── v10164.0.1+0 Installed StatsBase ──────────────────── v0.34.9 Installed DataValueInterfaces ────────── v1.0.0 Installed Qt6ShaderTools_jll ─────────── v6.8.2+1 Installed Libffi_jll ─────────────────── v3.4.7+0 Installed CEnum ──────────────────────── v0.5.0 Installed Pixman_jll ─────────────────── v0.44.2+0 Installed LoggingExtras ──────────────── v1.2.0 Installed StructUtils ────────────────── v2.6.0 Installed Expat_jll ──────────────────── v2.7.3+0 Installed libdecor_jll ───────────────── v0.2.2+0 Installed Xorg_libXcursor_jll ────────── v1.2.4+0 Installed IrrationalConstants ────────── v0.2.6 Installed libpng_jll ─────────────────── v1.6.53+0 Installed Contour ────────────────────── v0.6.3 Installed SimpleTraits ───────────────── v0.9.5 Installed StableRNGs ─────────────────── v1.0.4 Installed Xorg_xcb_util_keysyms_jll ──── v0.4.1+0 Installed ColorVectorSpace ───────────── v0.11.0 Installed HTTP ───────────────────────── v1.10.19 Installed BitFlags ───────────────────── v0.1.9 Installed libfdk_aac_jll ─────────────── v2.0.4+0 Installed FFMPEG_jll ─────────────────── v8.0.1+0 Installed IOCapture ──────────────────── v1.0.0 Installed Scratch ────────────────────── v1.3.0 Installed SimpleBufferStream ─────────── v1.2.0 Installed Qt6Declarative_jll ─────────── v6.8.2+1 Installed Ghostscript_jll ────────────── v9.55.1+0 Installed RelocatableFolders ─────────── v1.0.1 Installed DocStringExtensions ────────── v0.9.5 Installed AliasTables ────────────────── v1.1.3 Installed JLFzf ──────────────────────── v0.1.11 Installed ConcurrentUtilities ────────── v2.5.0 Installed IteratorInterfaceExtensions ── v1.0.0 Installed Plots ──────────────────────── v1.41.3 Installed Xorg_libXi_jll ─────────────── v1.8.3+0 Installed RecipesBase ────────────────── v1.3.4 Installed Git_LFS_jll ────────────────── v3.7.0+0 Installed DataAPI ────────────────────── v1.16.0 Installed libevdev_jll ───────────────── v1.13.4+0 Installed Wayland_jll ────────────────── v1.24.0+0 Installed Measures ───────────────────── v0.3.3 Installed StaticArraysCore ───────────── v1.4.4 Installed StaticArrays ───────────────── v1.9.16 Installed Xorg_libxkbfile_jll ────────── v1.1.3+0 Installed Colors ─────────────────────── v0.13.1 Installed Latexify ───────────────────── v0.16.10 Installed ColorTypes ─────────────────── v0.12.1 Installed Libglvnd_jll ───────────────── v1.7.1+1 Installed Xorg_xkbcomp_jll ───────────── v1.4.7+0 Installed StringManipulation ─────────── v0.4.2 Installed Requires ───────────────────── v1.3.1 Installed Documenter ─────────────────── v1.16.1 Installed Vulkan_Loader_jll ──────────── v1.3.243+0 Installed Glib_jll ───────────────────── v2.86.2+0 Installed LogExpFunctions ────────────── v0.3.29 Installed JSON ───────────────────────── v1.3.0 Installed Xorg_xcb_util_cursor_jll ───── v0.1.6+0 Installed PrettyTables ───────────────── v2.4.0 Installed Xorg_libXdmcp_jll ──────────── v1.1.6+0 Installed Xorg_xcb_util_renderutil_jll ─ v0.3.10+0 Installed Git_jll ────────────────────── v2.52.0+0 Installed Parsers ────────────────────── v2.8.3 Installed Xorg_libSM_jll ─────────────── v1.2.6+0 Installed Xorg_xkeyboard_config_jll ──── v2.44.0+0 Installed ColorSchemes ───────────────── v3.31.0 Installed XZ_jll ─────────────────────── v5.8.2+0 Installed JLLWrappers ────────────────── v1.7.1 Installed RecipesPipeline ────────────── v0.6.12 Installed Pango_jll ──────────────────── v1.57.0+0 Installed x265_jll ───────────────────── v4.1.0+0 Installed Graphs ─────────────────────── v1.13.3 Installed GR_jll ─────────────────────── v0.73.19+1 Installed Dbus_jll ───────────────────── v1.16.2+0 Installed JpegTurbo_jll ──────────────── v3.1.4+0 Installed Libmount_jll ───────────────── v2.41.2+0 Installed TranscodingStreams ─────────── v0.11.3 Installed Xorg_xtrans_jll ────────────── v1.6.0+0 Installed ExceptionUnwrapping ────────── v0.1.11 Installed PlotUtils ──────────────────── v1.4.4 Installed TensorCore ─────────────────── v0.1.1 Installed Literate ───────────────────── v2.21.0 Installed Statistics ─────────────────── v1.11.1 Installed Xorg_libX11_jll ────────────── v1.8.12+0 Installed StatsAPI ───────────────────── v1.8.0 Installed PrecompileTools ────────────── v1.3.3 Installed OffsetArrays ───────────────── v1.17.0 Installed MbedTLS ────────────────────── v1.1.9 Installed CellularPotts ──────────────── v0.3.6 Installed Xorg_xcb_util_image_jll ────── v0.4.1+0 Installed MarkdownAST ────────────────── v0.1.2 Installed OpenSSL ────────────────────── v1.6.1 Installed xkbcommon_jll ──────────────── v1.13.0+0 Installed GettextRuntime_jll ─────────── v0.22.4+0 Installed FriBidi_jll ────────────────── v1.0.17+0 Installed Metis ──────────────────────── v1.5.0 Installed GLFW_jll ───────────────────── v3.4.1+0 Installed libvorbis_jll ──────────────── v1.3.8+0 Installed LAME_jll ───────────────────── v3.100.3+0 Installed Xorg_libXrender_jll ────────── v0.9.12+0 Installed PtrArrays ──────────────────── v1.3.0 Installed LazilyInitializedFields ────── v1.3.0 Installed Git ────────────────────────── v1.5.0 Installed MbedTLS_jll ────────────────── v2.28.1010+0 Installed FixedPointNumbers ──────────── v0.8.5 Installed Libiconv_jll ───────────────── v1.18.0+0 Installed FreeType2_jll ──────────────── v2.13.4+0 Installed Xorg_libXrandr_jll ─────────── v1.5.5+0 Installed Showoff ────────────────────── v1.0.3 Installed Qt6Wayland_jll ─────────────── v6.8.2+2 Installed Xorg_libXext_jll ───────────── v1.3.7+0 Installed METIS_jll ──────────────────── v5.1.3+0 Installed ANSIColoredPrinters ────────── v0.0.1 Installed GR ─────────────────────────── v0.73.19 Installing 79 artifacts Installed artifact Xorg_xcb_util_renderutil 32.1 KiB Installed artifact Graphite2 120.2 KiB Installed artifact xkbcommon 298.7 KiB Installed artifact JpegTurbo 1.4 MiB Installed artifact libvorbis 271.0 KiB Installed artifact HarfBuzz 1.7 MiB Installed artifact Fontconfig 984.8 KiB Installed artifact Libiconv 1.9 MiB Installed artifact eudev 3.9 MiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact libpng 329.0 KiB Installed artifact Libglvnd 833.5 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Xorg_xcb_util_image 54.3 KiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact XZ 1.5 MiB Installed artifact GettextRuntime 543.0 KiB Installed artifact fzf 3.3 MiB Installed artifact x265 1.4 MiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact Xorg_libxkbfile 486.7 KiB Installed artifact GLFW 180.1 KiB Installed artifact Xorg_libXrandr 354.5 KiB Installed artifact METIS 1.1 MiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Pixman 372.2 KiB Installed artifact mtdev 79.6 KiB Installed artifact Dbus 489.8 KiB Installed artifact FreeType2 1.5 MiB Installed artifact libfdk_aac 2.8 MiB Installed artifact libass 427.8 KiB Installed artifact libinput 1.0 MiB Installed artifact FriBidi 78.9 KiB Installed artifact Ogg 250.3 KiB Installed artifact Vulkan_Loader 177.3 KiB Installed artifact libevdev 117.1 KiB Installed artifact Libmount 6.5 MiB Installed artifact Ghostscript 31.4 MiB Installed artifact Opus 960.8 KiB Installed artifact Libtiff 2.3 MiB Installed artifact Bzip2 503.5 KiB Installed artifact Glib 7.7 MiB Installed artifact Qt6Wayland 2.2 MiB Installed artifact LERC 272.9 KiB Installed artifact Xorg_xcb_util_wm 147.9 KiB Installed artifact Qt6ShaderTools 2.1 MiB Installed artifact GR 16.3 MiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Xorg_libICE 384.9 KiB Installed artifact LZO 208.9 KiB Installed artifact Xorg_xcb_util_cursor 27.6 KiB Installed artifact x264 2.1 MiB Installed artifact Xorg_libSM 164.1 KiB Installed artifact OpenSSH 4.3 MiB Installed artifact Libuuid 3.7 MiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact Expat 283.3 KiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact Xorg_xcb_util_keysyms 17.8 KiB Installed artifact LAME 292.5 KiB Installed artifact Xorg_libXfixes 59.0 KiB Installed artifact libdecor 44.1 KiB Installed artifact Wayland 390.6 KiB Installed artifact Pango 2.0 MiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact Libffi 44.2 KiB Installed artifact Xorg_xcb_util 39.5 KiB Installed artifact MbedTLS 2.2 MiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact Xorg_libXinerama 50.1 KiB Installed artifact Cairo 2.2 MiB Installed artifact Git_LFS 9.6 MiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact libaom 6.4 MiB Installed artifact FFMPEG 11.7 MiB Installed artifact Qt6Base 20.6 MiB Installed artifact Git 49.3 MiB Installed artifact Qt6Declarative 21.6 MiB Updating `~/.julia/environments/v1.14/Project.toml` [11b7dee7] + CellularPotts v0.3.6 Updating `~/.julia/environments/v1.14/Manifest.toml` [a4c015fc] + ANSIColoredPrinters v0.0.1 [1520ce14] + AbstractTrees v0.4.5 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [d1d4a3ce] + BitFlags v0.1.9 [fa961155] + CEnum v0.5.0 [11b7dee7] + CellularPotts v0.3.6 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [ffbed154] + DocStringExtensions v0.9.5 [e30172f5] + Documenter v1.16.1 [460bff9d] + ExceptionUnwrapping v0.1.11 [c87230d0] + FFMPEG v0.4.5 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [28b8d3ca] + GR v0.73.19 [d7ba0133] + Git v1.5.0 [86223c79] + Graphs v1.13.3 [42e2da0e] + Grisu v1.0.2 [cd3eb016] + HTTP v1.10.19 [b5f81e59] + IOCapture v1.0.0 [d25df0c9] + Inflate v0.1.5 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [1019f520] + JLFzf v0.1.11 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.3.0 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [0e77f7df] + LazilyInitializedFields v1.3.0 [98b081ad] + Literate v2.21.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [d0879d2d] + MarkdownAST v0.1.2 [739be429] + MbedTLS v1.1.9 [442fdcdd] + Measures v0.3.3 [2679e427] + Metis v1.5.0 [e1d29d7a] + Missings v1.2.0 [77ba4419] + NaNMath v1.1.3 [6fe1bfb0] + OffsetArrays v1.17.0 [4d8831e6] + OpenSSL v1.6.1 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [ccf2f8ad] + PlotThemes v3.3.0 [995b91a9] + PlotUtils v1.4.4 [91a5bcdd] + Plots v1.41.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 ⌅ [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [3cdcf5f2] + RecipesBase v1.3.4 [01d81517] + RecipesPipeline v0.6.12 [189a3867] + Reexport v1.2.2 [2792f1a3] + RegistryInstances v0.1.0 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [6c6a2e73] + Scratch v1.3.0 [992d4aef] + Showoff v1.0.3 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [860ef19b] + StableRNGs v1.0.4 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.9 [892a3eda] + StringManipulation v0.4.2 [ec057cc2] + StructUtils v2.6.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [1cfade01] + UnicodeFun v0.4.1 [41fe7b60] + Unzip v0.2.0 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.5+0 [ee1fde0b] + Dbus_jll v1.16.2+0 [2702e6a9] + EpollShim_jll v0.0.20230411+1 [2e619515] + Expat_jll v2.7.3+0 [b22a6f82] + FFMPEG_jll v8.0.1+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [0656b61e] + GLFW_jll v3.4.1+0 [d2c73de3] + GR_jll v0.73.19+1 [b0724c58] + GettextRuntime_jll v0.22.4+0 [61579ee1] + Ghostscript_jll v9.55.1+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.52.0+0 [7746bdde] + Glib_jll v2.86.2+0 [3b182d85] + Graphite2_jll v1.3.15+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [aacddb02] + JpegTurbo_jll v3.1.4+0 [c1c5ebd0] + LAME_jll v3.100.3+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 ⌅ [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.2+0 [89763e89] + Libtiff_jll v4.7.2+0 [38a345b3] + Libuuid_jll v2.41.2+0 [d00139f3] + METIS_jll v5.1.3+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [e7412a2a] + Ogg_jll v1.3.6+0 [9bd350c2] + OpenSSH_jll v10.2.1+0 [91d4177d] + Opus_jll v1.6.0+0 [36c8627f] + Pango_jll v1.57.0+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [c0090381] + Qt6Base_jll v6.8.2+2 [629bc702] + Qt6Declarative_jll v6.8.2+1 [ce943373] + Qt6ShaderTools_jll v6.8.2+1 [e99dba38] + Qt6Wayland_jll v6.8.2+2 [a44049a8] + Vulkan_Loader_jll v1.3.243+0 [a2964d1f] + Wayland_jll v1.24.0+0 [ffd25f8a] + XZ_jll v5.8.2+0 [f67eecfb] + Xorg_libICE_jll v1.1.2+0 [c834827a] + Xorg_libSM_jll v1.2.6+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [935fb764] + Xorg_libXcursor_jll v1.2.4+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] + Xorg_libXi_jll v1.8.3+0 [d1454406] + Xorg_libXinerama_jll v1.1.6+0 [ec84b674] + Xorg_libXrandr_jll v1.5.5+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [cc61e674] + Xorg_libxkbfile_jll v1.1.3+0 [e920d4aa] + Xorg_xcb_util_cursor_jll v0.1.6+0 [12413925] + Xorg_xcb_util_image_jll v0.4.1+0 [2def613f] + Xorg_xcb_util_jll v0.4.1+0 [975044d2] + Xorg_xcb_util_keysyms_jll v0.4.1+0 [0d47668e] + Xorg_xcb_util_renderutil_jll v0.3.10+0 [c22f9ab0] + Xorg_xcb_util_wm_jll v0.4.2+0 [35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [35ca27e7] + eudev_jll v3.2.14+0 [214eeab7] + fzf_jll v0.61.1+0 [a4ae2306] + libaom_jll v3.13.1+0 [0ac62f75] + libass_jll v0.17.4+0 [1183f4f0] + libdecor_jll v0.2.2+0 [2db6ffa8] + libevdev_jll v1.13.4+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [36db933b] + libinput_jll v1.28.1+0 [b53b4c65] + libpng_jll v1.6.53+0 [f27f6e37] + libvorbis_jll v1.3.8+0 [009596ad] + mtdev_jll v1.1.7+0 ⌅ [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [d8fb68d0] + xkbcommon_jll v1.13.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 33.05s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 Precompilation failed after 12.21s ################################################################################ # Testing # Testing CellularPotts Status `/tmp/jl_QbIK5i/Project.toml` [6e4b80f9] BenchmarkTools v1.6.3 [11b7dee7] CellularPotts v0.3.6 [35d6a980] ColorSchemes v3.31.0 [5ae59095] Colors v0.13.1 [0c46a032] DifferentialEquations v7.17.0 [e30172f5] Documenter v1.16.1 [86223c79] Graphs v1.13.3 [98b081ad] Literate v2.21.0 [2679e427] Metis v1.5.0 [6fe1bfb0] OffsetArrays v1.17.0 [91a5bcdd] Plots v1.41.3 ⌅ [08abe8d2] PrettyTables v2.4.0 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.9 [37e2e46d] LinearAlgebra v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_QbIK5i/Manifest.toml` [47edcb42] ADTypes v1.21.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [a95523ee] AlmostBlockDiagonals v0.1.10 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.22.0 [4c555306] ArrayLayouts v1.12.2 [aae01518] BandedMatrices v1.11.0 [6e4b80f9] BenchmarkTools v1.6.3 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [764a87c0] BoundaryValueDiffEq v5.18.0 [7227322d] BoundaryValueDiffEqAscher v1.8.0 [56b672f2] BoundaryValueDiffEqCore v1.11.1 [85d9eb09] BoundaryValueDiffEqFIRK v1.9.0 [1a22d4ce] BoundaryValueDiffEqMIRK v1.9.0 [9255f1d6] BoundaryValueDiffEqMIRKN v1.8.0 [ed55bfe0] BoundaryValueDiffEqShooting v1.9.0 [70df07ce] BracketingNonlinearSolve v1.6.2 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.7 [11b7dee7] CellularPotts v0.3.6 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [38540f10] CommonSolve v0.2.6 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [bcd4f6db] DelayDiffEq v5.64.0 [8bb1440f] DelimitedFiles v1.9.1 [2b5f629d] DiffEqBase v6.194.0 [459566f4] DiffEqCallbacks v4.11.0 [77a26b50] DiffEqNoiseProcess v5.24.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [0c46a032] DifferentialEquations v7.17.0 [a0c0ee7d] DifferentiationInterface v0.7.13 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.16.1 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.17 [460bff9d] ExceptionUnwrapping v0.1.11 [d4d017d3] ExponentialUtilities v1.29.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [c87230d0] FFMPEG v0.4.5 [9d29842c] FastAlmostBandedMatrices v0.1.5 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.1.0 [a4df4552] FastPower v1.3.0 [1a297f60] FillArrays v1.15.0 [6a86dc24] FiniteDiff v2.29.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.3.1 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [28b8d3ca] GR v0.73.19 [c145ed77] GenericSchur v0.5.6 [d7ba0133] Git v1.5.0 [86223c79] Graphs v1.13.3 [42e2da0e] Grisu v1.0.2 [cd3eb016] HTTP v1.10.19 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v1.0.0 [615f187c] IfElse v0.1.1 [d25df0c9] Inflate v0.1.5 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [1019f520] JLFzf v0.1.11 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.3.0 [ae98c720] Jieko v0.2.1 [ccbc3e58] JumpProcesses v9.19.3 [ba0b0d4f] Krylov v0.10.3 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.10 [10f19ff3] LayoutPointers v0.1.17 [0e77f7df] LazilyInitializedFields v1.3.0 [5078a376] LazyArrays v2.9.4 [2d8b4e74] LevyArea v1.0.0 [87fe0de2] LineSearch v0.1.5 [d3d80556] LineSearches v7.5.1 [7ed4a6bd] LinearSolve v3.55.0 [98b081ad] Literate v2.21.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [d0879d2d] MarkdownAST v0.1.2 [a3b82374] MatrixFactorizations v3.1.3 [bb5d69b7] MaybeInplace v0.1.4 [739be429] MbedTLS v1.1.9 [442fdcdd] Measures v0.3.3 [2679e427] Metis v1.5.0 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.7 [46d2c3a1] MuladdMacro v0.2.4 [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [8913a72c] NonlinearSolve v4.13.0 [be0214bd] NonlinearSolveBase v2.9.0 [5959db7a] NonlinearSolveFirstOrder v1.11.0 [9a2c21bd] NonlinearSolveQuasiNewton v1.12.0 [26075421] NonlinearSolveSpectralMethods v1.6.0 [6fe1bfb0] OffsetArrays v1.17.0 [4d8831e6] OpenSSL v1.6.1 [429524aa] Optim v1.13.3 [bac558e1] OrderedCollections v1.8.1 [1dea7af3] OrdinaryDiffEq v6.105.0 [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.8.0 [6ad6398a] OrdinaryDiffEqBDF v1.13.0 [bbf590c4] OrdinaryDiffEqCore v2.3.0 [50262376] OrdinaryDiffEqDefault v1.11.0 [4302a76b] OrdinaryDiffEqDifferentiation v1.21.0 [9286f039] OrdinaryDiffEqExplicitRK v1.7.0 [e0540318] OrdinaryDiffEqExponentialRK v1.11.0 [becaefa8] OrdinaryDiffEqExtrapolation v1.12.0 [5960d6e9] OrdinaryDiffEqFIRK v1.19.0 [101fe9f7] OrdinaryDiffEqFeagin v1.7.0 [d3585ca7] OrdinaryDiffEqFunctionMap v1.8.0 [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.8.0 [9f002381] OrdinaryDiffEqIMEXMultistep v1.10.0 [521117fe] OrdinaryDiffEqLinear v1.9.0 [1344f307] OrdinaryDiffEqLowOrderRK v1.9.0 [b0944070] OrdinaryDiffEqLowStorageRK v1.10.0 [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.18.0 [c9986a66] OrdinaryDiffEqNordsieck v1.7.0 [5dd0a6cf] OrdinaryDiffEqPDIRK v1.9.0 [5b33eab2] OrdinaryDiffEqPRK v1.7.0 [04162be5] OrdinaryDiffEqQPRK v1.7.0 [af6ede74] OrdinaryDiffEqRKN v1.8.0 [43230ef6] OrdinaryDiffEqRosenbrock v1.21.0 [2d112036] OrdinaryDiffEqSDIRK v1.10.0 [669c94d9] OrdinaryDiffEqSSPRK v1.10.0 [e3e12d00] OrdinaryDiffEqStabilizedIRK v1.9.0 [358294b1] OrdinaryDiffEqStabilizedRK v1.7.0 [fa646aed] OrdinaryDiffEqSymplecticRK v1.10.0 [b1df2697] OrdinaryDiffEqTsit5 v1.8.0 [79d7bb75] OrdinaryDiffEqVerner v1.9.0 [90014a1f] PDMats v0.11.37 [69de0a69] Parsers v2.8.3 [ccf2f8ad] PlotThemes v3.3.0 [995b91a9] PlotUtils v1.4.4 [91a5bcdd] Plots v1.41.3 [e409e4f3] PoissonRandom v0.4.7 [f517fe37] Polyester v0.7.18 [1d0040c9] PolyesterWeave v0.2.2 [85a6dd25] PositiveFactorizations v0.2.4 ⌅ [d236fae5] PreallocationTools v0.4.34 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 ⌅ [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [74087812] Random123 v1.7.1 [e6cf234a] RandomNumbers v1.6.0 [817f1d60] ReTestItems v1.35.0 [3cdcf5f2] RecipesBase v1.3.4 [01d81517] RecipesPipeline v0.6.12 [731186ca] RecursiveArrayTools v3.42.1 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [ae5879a3] ResettableStacks v1.2.0 [79098fc4] Rmath v0.9.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.16 [94e857df] SIMDTypes v0.1.0 [0bca4576] SciMLBase v2.131.0 [19f34311] SciMLJacobianOperators v0.1.12 [a6db7da4] SciMLLogging v1.8.0 [c0aeaf25] SciMLOperators v1.14.1 [431bcebd] SciMLPublic v1.0.1 [53ae85a6] SciMLStructures v1.9.0 [6c6a2e73] Scratch v1.3.0 [efcf1570] Setfield v1.1.2 [992d4aef] Showoff v1.0.3 [777ac1f9] SimpleBufferStream v1.2.0 [727e6d20] SimpleNonlinearSolve v2.10.0 [699a6c99] SimpleTraits v0.9.5 [a2af1166] SortingAlgorithms v1.2.2 [9f842d2f] SparseConnectivityTracer v1.1.3 [0a514795] SparseMatrixColorings v0.4.23 [276daf66] SpecialFunctions v2.6.1 [860ef19b] StableRNGs v1.0.4 [aedffcd0] Static v1.3.1 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.9 [4c63d2b9] StatsFuns v1.5.2 [9672c7b4] SteadyStateDiffEq v2.8.0 [789caeaf] StochasticDiffEq v6.87.0 [7792a7ef] StrideArraysCore v0.5.8 [892a3eda] StringManipulation v0.4.2 [ec057cc2] StructUtils v2.6.0 [c3572dad] Sundials v5.1.0 ⌃ [2efcf032] SymbolicIndexingInterface v0.3.44 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [1e6cf692] TestEnv v1.103.0 [8290d209] ThreadingUtilities v0.5.5 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [781d530d] TruncatedStacktraces v1.4.0 [5c2747f8] URIs v1.6.1 [1cfade01] UnicodeFun v0.4.1 [41fe7b60] Unzip v0.2.0 [6e34b625] Bzip2_jll v1.0.9+0 [83423d85] Cairo_jll v1.18.5+0 [ee1fde0b] Dbus_jll v1.16.2+0 [2702e6a9] EpollShim_jll v0.0.20230411+1 [2e619515] Expat_jll v2.7.3+0 [b22a6f82] FFMPEG_jll v8.0.1+0 [a3f928ae] Fontconfig_jll v2.17.1+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [0656b61e] GLFW_jll v3.4.1+0 [d2c73de3] GR_jll v0.73.19+1 [b0724c58] GettextRuntime_jll v0.22.4+0 [61579ee1] Ghostscript_jll v9.55.1+0 [020c3dae] Git_LFS_jll v3.7.0+0 [f8c6e375] Git_jll v2.52.0+0 [7746bdde] Glib_jll v2.86.2+0 [3b182d85] Graphite2_jll v1.3.15+0 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [aacddb02] JpegTurbo_jll v3.1.4+0 [c1c5ebd0] LAME_jll v3.100.3+0 [88015f11] LERC_jll v4.0.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 ⌅ [e9f186c6] Libffi_jll v3.4.7+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.2+0 [89763e89] Libtiff_jll v4.7.2+0 [38a345b3] Libuuid_jll v2.41.2+0 [d00139f3] METIS_jll v5.1.3+0 [856f044c] MKL_jll v2025.2.0+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [e7412a2a] Ogg_jll v1.3.6+0 [656ef2d0] OpenBLAS32_jll v0.3.29+0 [9bd350c2] OpenSSH_jll v10.2.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [91d4177d] Opus_jll v1.6.0+0 [36c8627f] Pango_jll v1.57.0+0 ⌅ [30392449] Pixman_jll v0.44.2+0 [c0090381] Qt6Base_jll v6.8.2+2 [629bc702] Qt6Declarative_jll v6.8.2+1 [ce943373] Qt6ShaderTools_jll v6.8.2+1 [e99dba38] Qt6Wayland_jll v6.8.2+2 [f50d1b31] Rmath_jll v0.5.1+0 [ca45d3f4] SuiteSparse32_jll v7.12.1+0 [fb77eaff] Sundials_jll v7.5.0+0 [a44049a8] Vulkan_Loader_jll v1.3.243+0 [a2964d1f] Wayland_jll v1.24.0+0 [ffd25f8a] XZ_jll v5.8.2+0 [f67eecfb] Xorg_libICE_jll v1.1.2+0 [c834827a] Xorg_libSM_jll v1.2.6+0 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [935fb764] Xorg_libXcursor_jll v1.2.4+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [d091e8ba] Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] Xorg_libXi_jll v1.8.3+0 [d1454406] Xorg_libXinerama_jll v1.1.6+0 [ec84b674] Xorg_libXrandr_jll v1.5.5+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [cc61e674] Xorg_libxkbfile_jll v1.1.3+0 [e920d4aa] Xorg_xcb_util_cursor_jll v0.1.6+0 [12413925] Xorg_xcb_util_image_jll v0.4.1+0 [2def613f] Xorg_xcb_util_jll v0.4.1+0 [975044d2] Xorg_xcb_util_keysyms_jll v0.4.1+0 [0d47668e] Xorg_xcb_util_renderutil_jll v0.3.10+0 [c22f9ab0] Xorg_xcb_util_wm_jll v0.4.2+0 [35661453] Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [35ca27e7] eudev_jll v3.2.14+0 [214eeab7] fzf_jll v0.61.1+0 [a4ae2306] libaom_jll v3.13.1+0 [0ac62f75] libass_jll v0.17.4+0 [1183f4f0] libdecor_jll v0.2.2+0 [2db6ffa8] libevdev_jll v1.13.4+0 [f638f0a6] libfdk_aac_jll v2.0.4+0 [36db933b] libinput_jll v1.28.1+0 [b53b4c65] libpng_jll v1.6.53+0 [f27f6e37] libvorbis_jll v1.3.8+0 [009596ad] mtdev_jll v1.1.7+0 [1317d2d5] oneTBB_jll v2022.0.0+1 ⌅ [1270edf5] x264_jll v10164.0.1+0 [dfaa095f] x265_jll v4.1.0+0 [d8fb68d0] xkbcommon_jll v1.13.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Spaces or graphs, who's to say? | 3 3 2.8s Test Summary: | Pass Total Time Periodic grids | 8 8 0.1s Test Summary: | Pass Total Time Neighborhoods | 2 2 0.0s Test Summary: | Pass Total Time Lonely cells | 2 2 5.1s Test Summary: | Pass Total Time Testing positions keyword | 2 2 1.1s Test Summary: | Pass Total Time Adding Cell Properties | 6 6 0.9s Test Summary: | Pass Total Time Add/Delete Cells | 2 2 0.3s Test Summary: | Pass Total Time Penalty tests | 1 1 0.9s Test Summary: | Pass Total Time General Fragment Test | 1 1 2.6s Test Summary: | Pass Total Time Euler Characteristic | 2 2 1.4s Test Summary: | Pass Total Time Show me the CPM | 1 1 0.4s Test Summary: | Pass Total Time Hello World | 1 1 2.4s Test Summary: | Pass Total Time Going 3D | 1 1 2.8s Test Summary: | Pass Total Time Lets Get Moving | 1 1 3.1s Test Summary: | Pass Total Time OnPatrol | 1 1 9.0s Test Summary: | Pass Total Time Over Here | 1 1 1.9s  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB 1 dependency had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ 168 Test Summary: | Pass Total Time Bringing ODEs To Life | 1 1 30m39.6s WARNING: Method definition cpmUpdate!(Any, Any) in module Main at /home/pkgeval/.julia/packages/CellularPotts/EuGHg/docs/src/ExampleGallery/BringingODEsToLife/BringingODEsToLife.jl:42 overwritten at /home/pkgeval/.julia/packages/CellularPotts/EuGHg/docs/src/ExampleGallery/DiffusionInsideCells/DiffusionInsideCells.jl:36. Test Summary: | Pass Total Time Diffusion Inside Cells | 1 1 25.2s WARNING: Method definition cpmUpdate!(Any, Any) in module Main at /home/pkgeval/.julia/packages/CellularPotts/EuGHg/docs/src/ExampleGallery/DiffusionInsideCells/DiffusionInsideCells.jl:36 overwritten at /home/pkgeval/.julia/packages/CellularPotts/EuGHg/docs/src/ExampleGallery/DiffusionOutsideCells/DiffusionOutsideCells.jl:30. WARNING: Method definition f(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/CellularPotts/EuGHg/docs/src/ExampleGallery/BringingODEsToLife/BringingODEsToLife.jl:55 overwritten at /home/pkgeval/.julia/packages/CellularPotts/EuGHg/docs/src/ExampleGallery/DiffusionOutsideCells/DiffusionOutsideCells.jl:50. Test Summary: | Pass Total Time Diffusion Outside Cells | 1 1 38.8s Test Summary: | Pass Total Time Tight Spaces | 1 1 1.9s Test Summary: | Pass Total Time Travel Time | 1 1 7.9s Test Summary: | Pass Total Time Allocations (no diagonal) | 1 1 15.8s ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 416 running 1 of 1 signal (10): User defined signal 1 getproperty at ./Base_compiler.jl:57 [inlined] iterate at ./iterators.jl:536 [inlined] _piterate at ./iterators.jl:1175 [inlined] _piterate at ./iterators.jl:1177 [inlined] iterate at ./iterators.jl:1185 [inlined] iterate at ./iterators.jl:536 isfragmented at /home/pkgeval/.julia/packages/CellularPotts/EuGHg/src/Fragmentation.jl:75 MHStep! at /home/pkgeval/.julia/packages/CellularPotts/EuGHg/src/MarkovStepper.jl:74 ModelStep! at /home/pkgeval/.julia/packages/CellularPotts/EuGHg/src/MarkovStepper.jl:108 unknown function (ip: 0x7e860cb41e52) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 ##core#159 at /home/pkgeval/.julia/packages/BenchmarkTools/2di2E/src/execution.jl:598 ##sample#160 at /home/pkgeval/.julia/packages/BenchmarkTools/2di2E/src/execution.jl:609 unknown function (ip: 0x7e860cb7baab) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 #_lineartrial#40 at /home/pkgeval/.julia/packages/BenchmarkTools/2di2E/src/execution.jl:192 _lineartrial at /home/pkgeval/.julia/packages/BenchmarkTools/2di2E/src/execution.jl:181 unknown function (ip: 0x7e860cb7b106) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2285 [inlined] jl_f_invokelatest at /source/src/builtins.c:889 #lineartrial#32 at /home/pkgeval/.julia/packages/BenchmarkTools/2di2E/src/execution.jl:51 [inlined] lineartrial at /home/pkgeval/.julia/packages/BenchmarkTools/2di2E/src/execution.jl:50 [inlined] #tune!#46 at /home/pkgeval/.julia/packages/BenchmarkTools/2di2E/src/execution.jl:299 tune! at /home/pkgeval/.julia/packages/BenchmarkTools/2di2E/src/execution.jl:288 [inlined] tune! at /home/pkgeval/.julia/packages/BenchmarkTools/2di2E/src/execution.jl:288 unknown function (ip: 0x7e860cb7b0a2) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:757 jl_eval_toplevel_stmts at /source/src/toplevel.c:600 jl_toplevel_eval_flex at /source/src/toplevel.c:698 ijl_toplevel_eval at /source/src/toplevel.c:769 ijl_toplevel_eval_in at /source/src/toplevel.c:814 eval at ./boot.jl:489 include_string at ./loading.jl:3151 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3211 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_73611.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:757 jl_eval_toplevel_stmts at /source/src/toplevel.c:600 jl_toplevel_eval_flex at /source/src/toplevel.c:698 ijl_toplevel_eval at /source/src/toplevel.c:769 ijl_toplevel_eval_in at /source/src/toplevel.c:814 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:585 jfptr__start_36920.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2285 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7e8622ad7249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== Test Summary: | Pass Total Time┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007e86085fc010 Total snapshots: 614. Utilization: 100% ╎614 @Base/client.jl:585 _start() ╎ 614 @Base/client.jl:310 exec_options(opts::Base.JLOptions) ╎ 614 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ 614 @Base/Base.jl:311 (::Base.IncludeInto)(fname::String) ╎ 614 @Base/Base.jl:310 include(mapexpr::Function, mod::Module, _path::S… ╎ 614 @Base/loading.jl:3211 _include(mapexpr::Function, mod::Module, _p… ╎ ╎ 614 @Base/loading.jl:3151 include_string(mapexpr::typeof(identity), … ╎ ╎ 614 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 614 @BenchmarkTools/….jl:288 tune!(b::BenchmarkTools.Benchmark) ╎ ╎ 614 @BenchmarkTools/….jl:288 tune! ╎ ╎ 614 @BenchmarkTools/…jl:299 tune!(b::BenchmarkTools.Benchmark, p… ╎ ╎ ╎ 614 @BenchmarkTools/…jl:50 lineartrial ╎ ╎ ╎ 614 @BenchmarkTools/…jl:51 #lineartrial#32 ╎ ╎ ╎ 614 @BenchmarkTools/…l:181 _lineartrial(b::BenchmarkTools.Ben… ╎ ╎ ╎ 614 @BenchmarkTools/…l:192 _lineartrial(b::BenchmarkTools.Be… ╎ ╎ ╎ 1 @BenchmarkTools/…:605 var"##sample#160"(::Tuple{}, __pa… 1╎ ╎ ╎ ╎ 1 @Base/timing.jl:77 gc_num ╎ ╎ ╎ 5 @BenchmarkTools/…:607 var"##sample#160"(::Tuple{}, __pa… ╎ ╎ ╎ ╎ 5 @BenchmarkTools/…:598 var"##core#159"() ╎ ╎ ╎ ╎ 5 @CellularPotts/…:108 ModelStep!(cpm::CellPotts{Int64,… ╎ ╎ ╎ ╎ 1 @CellularPotts/…:29 MHStep!(cpm::CellPotts{Int64, 4,… ╎ ╎ ╎ ╎ 1 @Random/…ndom.jl:267 rand ╎ ╎ ╎ ╎ 1 @Random/…dom.jl:262 rand ╎ ╎ ╎ ╎ ╎ 1 @Random/…ion.jl:379 rand ╎ ╎ ╎ ╎ ╎ 1 @Random/…om.jl:265 rand ╎ ╎ ╎ ╎ ╎ 1 @Random/…ro.jl:261 rand ╎ ╎ ╎ ╎ ╎ 1 @Random/…ro.jl:214 setstate! ╎ ╎ ╎ ╎ ╎ 1 @Base/task.jl:184 setproperty! 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ler.jl:61 setproperty! ╎ ╎ ╎ ╎ 2 @CellularPotts/…:43 MHStep!(cpm::CellPotts{Int64, 4,… 2╎ ╎ ╎ ╎ 2 @Base/…mpiler.jl:61 setproperty! ╎ ╎ ╎ ╎ 2 @CellularPotts/…:44 MHStep!(cpm::CellPotts{Int64, 4,… 2╎ ╎ ╎ ╎ 2 @Base/…mpiler.jl:61 setproperty! ╎ ╎ ╎ 608 @BenchmarkTools/…:609 var"##sample#160"(::Tuple{}, __pa… 1╎ ╎ ╎ ╎ 608 @BenchmarkTools/…:598 var"##core#159"() 2╎ ╎ ╎ ╎ 2 @CellularPotts/…:20 MHStep!(cpm::CellPotts{Int64, 4, … ╎ ╎ ╎ ╎ 599 @CellularPotts/…:108 ModelStep!(cpm::CellPotts{Int64,… 18╎ ╎ ╎ ╎ 18 @Base/…mpiler.jl:0 MHStep!(cpm::CellPotts{Int64, 4, … 3╎ ╎ ╎ ╎ 3 @CellularPotts/…:0 MHStep!(cpm::CellPotts{Int64, 4, … 14╎ ╎ ╎ ╎ 14 @CellularPotts/…:20 MHStep!(cpm::CellPotts{Int64, 4,… ╎ ╎ ╎ ╎ 1 @CellularPotts/…:23 MHStep!(cpm::CellPotts{Int64, 4,… 1╎ ╎ ╎ ╎ 1 @Base/…mpiler.jl:57 getproperty ╎ ╎ ╎ ╎ 28 @CellularPotts/…:29 MHStep!(cpm::CellPotts{Int64, 4,… 1╎ ╎ ╎ ╎ 1 @Base/…mpiler.jl:61 setproperty! ╎ ╎ ╎ ╎ 9 @Graphs/…aphs.jl:124 vertices ╎ ╎ ╎ ╎ 8 @Base/range.jl:490 OneTo ╎ ╎ ╎ ╎ ╎ 8 @Base/range.jl:475 OneTo ╎ ╎ ╎ ╎ ╎ 8 @Base/…tion.jl:648 max 8╎ ╎ ╎ ╎ ╎ 8 @Base/…ials.jl:844 ifelse ╎ ╎ ╎ ╎ 1 @Graphs/…phs.jl:123 nv ╎ ╎ ╎ ╎ ╎ 1 @CellularPotts/…:38 fadj 1╎ ╎ ╎ ╎ ╎ 1 @Base/…piler.jl:57 getproperty ╎ ╎ ╎ ╎ 18 @Random/…ndom.jl:267 rand ╎ ╎ ╎ ╎ 18 @Random/…dom.jl:262 rand ╎ ╎ ╎ ╎ ╎ 17 @Random/…ion.jl:379 rand ╎ ╎ ╎ ╎ ╎ 17 @Random/…om.jl:265 rand ╎ ╎ ╎ ╎ ╎ 1 @Random/…ro.jl:251 rand ╎ ╎ ╎ ╎ ╎ 1 @Random/…ro.jl:224 getstate 1╎ ╎ ╎ ╎ ╎ 1 @Base/task.jl:176 getproperty ╎ ╎ ╎ ╎ ╎ 7 @Random/…ro.jl:253 rand 7╎ ╎ ╎ ╎ ╎ 7 @Base/int.jl:418 | ╎ ╎ ╎ ╎ ╎ 1 @Random/…ro.jl:255 rand 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:419 xor ╎ ╎ ╎ ╎ ╎ 8 @Random/…ro.jl:261 rand ╎ ╎ ╎ ╎ ╎ 8 @Random/…ro.jl:214 setstate! ╎ ╎ ╎ ╎ ╎ 8 @Base/task.jl:184 setproperty! 8╎ ╎ ╎ ╎ ╎ ╎ 8 @Base/…ler.jl:61 setproperty! ╎ ╎ ╎ ╎ ╎ 1 @Random/…ion.jl:380 rand ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1058 * 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1043 * ╎ ╎ ╎ ╎ 22 @CellularPotts/…:31 MHStep!(cpm::CellPotts{Int64, 4,… 3╎ ╎ ╎ ╎ 3 @Base/…mpiler.jl:57 getproperty 17╎ ╎ ╎ ╎ 17 @Base/…mpiler.jl:61 setproperty! ╎ ╎ ╎ ╎ 2 @Base/…ntials.jl:964 getindex 1╎ ╎ ╎ ╎ 2 @Base/…tials.jl:385 checkbounds ╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:381 checkbounds ╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:11 length ╎ ╎ ╎ ╎ ╎ 1 @Base/tuple.jl:653 prod 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:88 * ╎ ╎ ╎ ╎ 13 @CellularPotts/…:32 MHStep!(cpm::CellPotts{Int64, 4,… 4╎ ╎ ╎ ╎ 4 @Base/…mpiler.jl:57 getproperty 9╎ ╎ ╎ ╎ 9 @Base/…mpiler.jl:61 setproperty! ╎ ╎ ╎ ╎ 141 @CellularPotts/…:35 MHStep!(cpm::CellPotts{Int64, 4,… 116╎ ╎ ╎ ╎ 116 @Base/…mpiler.jl:61 setproperty! ╎ ╎ ╎ ╎ 25 @Graphs/…core.jl:277 neighbors ╎ ╎ ╎ ╎ 25 @Graphs/…phs.jl:156 outneighbors ╎ ╎ ╎ ╎ ╎ 25 @CellularPotts/…:39 fadj 3╎ ╎ ╎ ╎ ╎ 3 @Base/…iler.jl:57 getproperty 22╎ ╎ ╎ ╎ ╎ 22 @Base/…ials.jl:965 getindex 1╎ ╎ ╎ ╎ 15 @CellularPotts/…:38 MHStep!(cpm::CellPotts{Int64, 4,… ╎ ╎ ╎ ╎ 14 @Base/…array.jl:1256 isempty 14╎ ╎ ╎ ╎ 14 @Base/…otion.jl:637 == ╎ ╎ ╎ ╎ 201 @CellularPotts/…:43 MHStep!(cpm::CellPotts{Int64, 4,… 186╎ ╎ ╎ ╎ 186 @Base/…mpiler.jl:61 setproperty! ╎ ╎ ╎ ╎ 15 @Random/…ndom.jl:267 rand ╎ ╎ ╎ ╎ 15 @Random/…dom.jl:262 rand ╎ ╎ ╎ ╎ ╎ 15 @Random/…ion.jl:460 rand ╎ ╎ ╎ ╎ ╎ 11 @Random/…on.jl:379 rand ╎ ╎ ╎ ╎ ╎ 11 @Random/…om.jl:265 rand ╎ ╎ ╎ ╎ ╎ 5 @Random/…ro.jl:251 rand ╎ ╎ ╎ ╎ ╎ 5 @Random/…o.jl:224 getstate 5╎ ╎ ╎ ╎ ╎ ╎ 5 @Base/task.jl:176 getproperty ╎ ╎ ╎ ╎ ╎ 4 @Random/…ro.jl:258 rand 4╎ ╎ ╎ ╎ ╎ 4 @Base/int.jl:419 xor ╎ ╎ ╎ ╎ ╎ 2 @Random/…ro.jl:261 rand ╎ ╎ ╎ ╎ ╎ 2 @Random/…o.jl:213 setstate! ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/task.jl:184 setproperty! 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ler.jl:61 setproperty! ╎ ╎ ╎ ╎ ╎ 4 @Random/…on.jl:381 rand 3╎ ╎ ╎ ╎ ╎ 3 @Base/int.jl:559 < ╎ ╎ ╎ ╎ 48 @CellularPotts/…:44 MHStep!(cpm::CellPotts{Int64, 4,… 2╎ ╎ ╎ ╎ 2 @Base/…mpiler.jl:57 getproperty 38╎ ╎ ╎ ╎ 38 @Base/…mpiler.jl:61 setproperty! ╎ ╎ ╎ ╎ 8 @Base/…ntials.jl:964 getindex 6╎ ╎ ╎ ╎ 8 @Base/…tials.jl:385 checkbounds ╎ ╎ ╎ ╎ ╎ 2 @Base/…tials.jl:381 checkbounds ╎ ╎ ╎ ╎ ╎ 2 @Base/…tials.jl:11 length 2╎ ╎ ╎ ╎ ╎ 2 @Base/…ials.jl:10 size ╎ ╎ ╎ ╎ 21 @CellularPotts/…:45 MHStep!(cpm::CellPotts{Int64, 4,… 20╎ ╎ ╎ ╎ 20 @Base/…mpiler.jl:61 setproperty! 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:965 getindex ╎ ╎ ╎ ╎ 1 @CellularPotts/…:50 MHStep!(cpm::CellPotts{Int64, 4,… 1╎ ╎ ╎ ╎ 1 @Base/…motion.jl:637 == ╎ ╎ ╎ ╎ 1 @CellularPotts/…:55 MHStep!(cpm::CellPotts{Int64, 4,… ╎ ╎ ╎ ╎ 1 @Base/anyall.jl:80 all ╎ ╎ ╎ ╎ 1 @Base/anyall.jl:202 all ╎ ╎ ╎ ╎ ╎ 1 @Base/anyall.jl:210 _all ╎ ╎ ╎ ╎ ╎ 1 @Base/…rator.jl:45 iterate ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:1245 iterate ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:1245 iterate ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:1252 _iterate_abstractarray ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:381 checkbounds ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:11 length 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:10 size ╎ ╎ ╎ ╎ 1 @CellularPotts/…:61 MHStep!(cpm::CellPotts{Int64, 4,… ╎ ╎ ╎ ╎ 1 @Graphs/…core.jl:277 neighbors ╎ ╎ ╎ ╎ 1 @Graphs/…phs.jl:156 outneighbors ╎ ╎ ╎ ╎ ╎ 1 @CellularPotts/…:39 fadj 1╎ ╎ ╎ ╎ ╎ 1 @Base/…piler.jl:57 getproperty ╎ ╎ ╎ ╎ 66 @CellularPotts/…:64 MHStep!(cpm::CellPotts{Int64, 4,… 3╎ ╎ ╎ ╎ 66 @CellularPotts/…:10 calculateΔH(cpm::CellPotts{Int6… ╎ ╎ ╎ ╎ 5 @CellularPotts/…:6 addPenalty! ╎ ╎ ╎ ╎ ╎ 2 @CellularPotts/…:13 addPenalty!(cpm::CellPotts{In… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…iler.jl:57 getproperty ╎ ╎ ╎ ╎ ╎ 1 @OffsetArrays/…:434 getindex ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:702 checkbounds ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:692 checkbounds ╎ ╎ ╎ ╎ ╎ 1 @OffsetArrays/…:281 checkindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:757 checkindex 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:559 < ╎ ╎ ╎ ╎ ╎ 2 @CellularPotts/…:20 addPenalty!(cpm::CellPotts{In… ╎ ╎ ╎ ╎ ╎ 2 @OffsetArrays/…:435 getindex 2╎ ╎ ╎ ╎ ╎ 2 @Base/…ials.jl:965 getindex ╎ ╎ ╎ ╎ ╎ 1 @CellularPotts/…:23 addPenalty!(cpm::CellPotts{In… ╎ ╎ ╎ ╎ ╎ 1 @OffsetArrays/…:419 getindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:702 checkbounds ╎ ╎ ╎ ╎ 7 @CellularPotts/…:45 addPenalty!(cpm::CellPotts{Int… ╎ ╎ ╎ ╎ ╎ 2 @CellularPotts/…:63 addPenalty! 2╎ ╎ ╎ ╎ ╎ 2 @OffsetArrays/…:434 getindex ╎ ╎ ╎ ╎ ╎ 2 @CellularPotts/…:64 addPenalty! 2╎ ╎ ╎ ╎ ╎ 2 @Base/…piler.jl:57 getproperty ╎ ╎ ╎ ╎ ╎ 3 @CellularPotts/…:66 addPenalty! 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:86 - 1╎ ╎ ╎ ╎ ╎ 1 @OffsetArrays/…:434 getindex ╎ ╎ ╎ ╎ ╎ 1 @OffsetArrays/…:435 getindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:965 getindex ╎ ╎ ╎ ╎ 4 @CellularPotts/…:51 addPenalty!(cpm::CellPotts{Int… ╎ ╎ ╎ ╎ ╎ 2 @CellularPotts/…:63 addPenalty! 2╎ ╎ ╎ ╎ ╎ 2 @Base/…piler.jl:57 getproperty ╎ ╎ ╎ ╎ ╎ 2 @CellularPotts/…:64 addPenalty! ╎ ╎ ╎ ╎ ╎ 2 @OffsetArrays/…:434 getindex ╎ ╎ ╎ ╎ ╎ 2 @Base/…rray.jl:702 checkbounds ╎ ╎ ╎ ╎ ╎ 2 @Base/…rray.jl:692 checkbounds ╎ ╎ ╎ ╎ ╎ 2 @OffsetArrays/…:281 checkindex ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ray.jl:757 checkindex 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/int.jl:86 - 2╎ ╎ ╎ ╎ 2 @CellularPotts/…:57 addPenalty!(cpm::CellPotts{Int… ╎ ╎ ╎ ╎ 7 @CellularPotts/…:78 addPenalty!(cpm::CellPotts{Int… ╎ ╎ ╎ ╎ ╎ 1 @CellularPotts/…:110 addPenalty! 1╎ ╎ ╎ ╎ ╎ 1 @Base/…piler.jl:57 getproperty ╎ ╎ ╎ ╎ ╎ 5 @CellularPotts/…:111 addPenalty! 4╎ ╎ ╎ ╎ ╎ 4 @Base/…iler.jl:57 getproperty 1╎ ╎ ╎ ╎ ╎ 1 @OffsetArrays/…:434 getindex ╎ ╎ ╎ ╎ ╎ 1 @CellularPotts/…:113 addPenalty! ╎ ╎ ╎ ╎ ╎ 1 @OffsetArrays/…:435 getindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:965 getindex ╎ ╎ ╎ ╎ 3 @CellularPotts/…:81 addPenalty!(cpm::CellPotts{Int… ╎ ╎ ╎ ╎ ╎ 2 @CellularPotts/…:126 perimeterLocal(space::CellSp… ╎ ╎ ╎ ╎ ╎ 2 @Base/…rray.jl:1245 iterate ╎ ╎ ╎ ╎ ╎ 2 @Base/…rray.jl:1245 iterate ╎ ╎ ╎ ╎ ╎ 2 @Base/…ray.jl:1252 _iterate_abstractarray 2╎ ╎ ╎ ╎ ╎ 2 @Base/…als.jl:381 checkbounds ╎ ╎ ╎ ╎ ╎ 1 @CellularPotts/…:128 perimeterLocal(space::CellSp… ╎ ╎ ╎ ╎ ╎ 1 @Base/…tors.jl:320 != 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tion.jl:637 == ╎ ╎ ╎ ╎ 8 @CellularPotts/…:82 addPenalty!(cpm::CellPotts{Int… ╎ ╎ ╎ ╎ ╎ 3 @CellularPotts/…:126 perimeterLocal(space::CellSp… ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:1245 iterate ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:1245 iterate ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:1252 _iterate_abstractarray 1╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:381 checkbounds ╎ ╎ ╎ ╎ ╎ 2 @Graphs/…re.jl:277 neighbors ╎ ╎ ╎ ╎ ╎ 2 @Graphs/…hs.jl:156 outneighbors ╎ ╎ ╎ ╎ ╎ 2 @CellularPotts/…:39 fadj 2╎ ╎ ╎ ╎ ╎ 2 @Base/…als.jl:965 getindex ╎ ╎ ╎ ╎ ╎ 5 @CellularPotts/…:128 perimeterLocal(space::CellSp… ╎ ╎ ╎ ╎ ╎ 4 @Base/…ials.jl:964 getindex 1╎ ╎ ╎ ╎ ╎ 4 @Base/…ials.jl:385 checkbounds 3╎ ╎ ╎ ╎ ╎ 3 @Base/…ials.jl:381 checkbounds ╎ ╎ ╎ ╎ ╎ 1 @Base/…tors.jl:320 != 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tion.jl:637 == ╎ ╎ ╎ ╎ 1 @CellularPotts/…:87 addPenalty!(cpm::CellPotts{Int… ╎ ╎ ╎ ╎ ╎ 1 @CellularPotts/…:122 perimeterLocal(space::CellSp… ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:1245 iterate ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:1245 iterate ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:1253 _iterate_abstractarray 1╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:965 getindex 1╎ ╎ ╎ ╎ 4 @CellularPotts/…:88 addPenalty!(cpm::CellPotts{Int… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…piler.jl:57 getproperty ╎ ╎ ╎ ╎ ╎ 1 @CellularPotts/…:122 perimeterLocal(space::CellSp… ╎ ╎ ╎ ╎ ╎ 1 @Graphs/…re.jl:277 neighbors ╎ ╎ ╎ ╎ ╎ 1 @Graphs/…hs.jl:156 outneighbors ╎ ╎ ╎ ╎ ╎ 1 @CellularPotts/…:39 fadj ╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:964 getindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:385 checkbounds 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:381 checkbounds ╎ ╎ ╎ ╎ ╎ 1 @CellularPotts/…:126 perimeterLocal(space::CellSp… ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:1245 iterate ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:1245 iterate ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:1252 _iterate_abstractarray 1╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:381 checkbounds ╎ ╎ ╎ ╎ 4 @CellularPotts/…:95 addPenalty!(cpm::CellPotts{Int… ╎ ╎ ╎ ╎ ╎ 1 @CellularPotts/…:109 addPenalty! 1╎ ╎ ╎ ╎ ╎ 1 @Base/…piler.jl:57 getproperty ╎ ╎ ╎ ╎ ╎ 3 @CellularPotts/…:111 addPenalty! 1╎ ╎ ╎ ╎ ╎ 1 @Base/…iler.jl:57 getproperty ╎ ╎ ╎ ╎ ╎ 1 @OffsetArrays/…:434 getindex ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:702 checkbounds ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:692 checkbounds ╎ ╎ ╎ ╎ ╎ 1 @OffsetArrays/…:281 checkindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:757 checkindex 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:86 - ╎ ╎ ╎ ╎ ╎ 1 @OffsetArrays/…:435 getindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:965 getindex ╎ ╎ ╎ ╎ 1 @CellularPotts/…:99 addPenalty!(cpm::CellPotts{Int… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…piler.jl:57 getproperty ╎ ╎ ╎ ╎ 2 @CellularPotts/…:102 addPenalty!(cpm::CellPotts{In… ╎ ╎ ╎ ╎ ╎ 2 @Base/array.jl:1020 setindex! ╎ ╎ ╎ ╎ ╎ 2 @Base/array.jl:1024 _setindex! ╎ ╎ ╎ ╎ ╎ 2 @Base/…ials.jl:381 checkbounds ╎ ╎ ╎ ╎ ╎ 2 @Base/…ials.jl:11 length ╎ ╎ ╎ ╎ ╎ 2 @Base/…ple.jl:653 prod 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/int.jl:88 * ╎ ╎ ╎ ╎ 15 @CellularPotts/…:183 addPenalty! 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:0 addPenalty!(cpm::CellPotts{Int6… 1╎ ╎ ╎ ╎ ╎ 1 @CellularPotts/…:0 addPenalty!(cpm::CellPotts{Int… 2╎ ╎ ╎ ╎ ╎ 2 @CellularPotts/…:187 addPenalty!(cpm::CellPotts{I… ╎ ╎ ╎ ╎ ╎ 4 @CellularPotts/…:190 addPenalty!(cpm::CellPotts{I… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…iler.jl:57 getproperty ╎ ╎ ╎ ╎ ╎ 3 @Base/…rray.jl:1360 getindex ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:1400 _getindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:702 checkbounds ╎ ╎ ╎ ╎ ╎ 2 @Base/…rray.jl:1401 _getindex ╎ ╎ ╎ ╎ ╎ 2 @SparseArrays/…:2748 getindex ╎ ╎ ╎ ╎ ╎ 2 @Base/sort.jl:310 searchsortedfirst ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/sort.jl:310 #searchsortedfirst#5 ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…rt.jl:308 searchsortedfirst 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…rt.jl:192 searchsortedfirst ╎ ╎ ╎ ╎ ╎ 4 @CellularPotts/…:194 addPenalty!(cpm::CellPotts{I… ╎ ╎ ╎ ╎ ╎ 4 @Base/…rray.jl:1360 getindex ╎ ╎ ╎ ╎ ╎ 4 @Base/…rray.jl:1401 _getindex ╎ ╎ ╎ ╎ ╎ 2 @SparseArrays/…:2745 getindex 2╎ ╎ ╎ ╎ ╎ 2 @Base/…als.jl:965 getindex ╎ ╎ ╎ ╎ ╎ 2 @SparseArrays/…:2748 getindex ╎ ╎ ╎ ╎ ╎ 2 @Base/sort.jl:310 searchsortedfirst ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/sort.jl:310 #searchsortedfirst#5 ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…rt.jl:308 searchsortedfirst ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…rt.jl:191 searchsortedfirst 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:87 + 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…rt.jl:192 searchsortedfirst ╎ ╎ ╎ ╎ ╎ 3 @CellularPotts/…:209 addPenalty!(cpm::CellPotts{I… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…iler.jl:57 getproperty 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:88 * ╎ ╎ ╎ ╎ ╎ 1 @OffsetArrays/…:434 getindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:702 checkbounds ╎ ╎ ╎ ╎ 1 @CellularPotts/…:68 MHStep!(cpm::CellPotts{Int64, 4,… ╎ ╎ ╎ ╎ 1 @Base/…al/exp.jl:329 exp(x::Float64) ╎ ╎ ╎ ╎ 1 @Base/…l/exp.jl:215 exp_impl ╎ ╎ ╎ ╎ ╎ 1 @Base/…l/exp.jl:181 table_unpack 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:393 & ╎ ╎ ╎ ╎ 1 @CellularPotts/…:71 MHStep!(cpm::CellPotts{Int64, 4,… ╎ ╎ ╎ ╎ 1 @Random/…ndom.jl:265 rand ╎ ╎ ╎ ╎ 1 @Random/…dom.jl:265 rand ╎ ╎ ╎ ╎ ╎ 1 @Random/…iro.jl:296 rand ╎ ╎ ╎ ╎ ╎ 1 @Random/…om.jl:265 rand ╎ ╎ ╎ ╎ ╎ 1 @Random/…ro.jl:251 rand ╎ ╎ ╎ ╎ ╎ 1 @Random/…ro.jl:224 getstate 1╎ ╎ ╎ ╎ ╎ 1 @Base/task.jl:176 getproperty ╎ ╎ ╎ ╎ 1 @CellularPotts/…:74 MHStep!(cpm::CellPotts{Int64, 4,… ╎ ╎ ╎ ╎ 1 @CellularPotts/…:72 isfragmented(cpm::CellPotts{Int… ╎ ╎ ╎ ╎ 1 @Graphs/…ore.jl:277 neighbors ╎ ╎ ╎ ╎ ╎ 1 @Graphs/…phs.jl:156 outneighbors ╎ ╎ ╎ ╎ ╎ 1 @CellularPotts/…:39 fadj 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:965 getindex ╎ ╎ ╎ ╎ 2 @CellularPotts/…:79 MHStep!(cpm::CellPotts{Int64, 4,… ╎ ╎ ╎ ╎ 2 @CellularPotts/…:11 updateHistory! ╎ ╎ ╎ ╎ 1 @CellularPotts/…:16 updateHistory!(cpm::CellPotts{… ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1345 push! ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1348 _push! ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1197 _growend! 1╎ ╎ ╎ ╎ ╎ 1 @Base/…iler.jl:57 getproperty ╎ ╎ ╎ ╎ 1 @CellularPotts/…:17 updateHistory!(cpm::CellPotts{… ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1345 push! ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1349 _push! 1╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1044 __safe_setindex! ╎ ╎ ╎ ╎ 6 @CellularPotts/…:109 ModelStep!(cpm::CellPotts{Int64,… ╎ ╎ ╎ ╎ 6 @Base/range.jl:925 iterate 6╎ ╎ ╎ ╎ 6 @Base/…motion.jl:637 == Allocations (diagonal) | 1 1 14.0s Testing CellularPotts tests passed Testing completed after 2542.07s PkgEval terminated after 2720.44s: test duration exceeded the time limit