Package evaluation to test MicroscopyLabels on Julia 1.14.0-DEV.1455 (9d9110fde9*) started at 2026-01-01T19:23:57.932 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 10.0s ################################################################################ # Installation # Installing MicroscopyLabels... Resolving package versions... Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed PaddedViews ───────────────── v0.5.12 Installed MosaicViews ───────────────── v0.3.4 Installed StackViews ────────────────── v0.1.2 Installed ConstructionBase ──────────── v1.6.0 Installed MacroTools ────────────────── v0.5.16 Installed DataStructures ────────────── v0.18.22 Installed FreeType ──────────────────── v3.0.1 Installed EarCut_jll ────────────────── v2.2.4+0 Installed Compat ────────────────────── v4.18.1 Installed OrderedCollections ────────── v1.8.1 Installed DataAPI ───────────────────── v1.16.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Statistics ────────────────── v1.11.1 Installed StatsBase ─────────────────── v0.33.21 Installed TiledIteration ────────────── v0.3.1 Installed DataValueInterfaces ───────── v1.0.0 Installed StatsAPI ──────────────────── v1.8.0 Installed OffsetArrays ──────────────── v1.17.0 Installed CEnum ─────────────────────── v0.4.2 Installed Colors ────────────────────── v0.12.11 Installed PrecompileTools ───────────── v1.3.3 Installed StaticArrays ──────────────── v1.9.16 Installed StructArrays ──────────────── v0.6.21 Installed StaticArraysCore ──────────── v1.4.4 Installed NaNMath ───────────────────── v1.1.3 Installed ChainRulesCore ────────────── v1.26.0 Installed ColorTypes ────────────────── v0.10.12 Installed ImageAxes ─────────────────── v0.6.9 Installed IrrationalConstants ───────── v0.1.1 Installed AbstractFFTs ──────────────── v1.5.0 Installed Graphics ──────────────────── v1.1.3 Installed SimpleTraits ──────────────── v0.9.5 Installed ColorVectorSpace ──────────── v0.8.7 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed LogExpFunctions ───────────── v0.3.29 Installed Tables ────────────────────── v1.12.1 Installed Unitful ───────────────────── v1.27.0 Installed ImageMetadata ─────────────── v0.9.5 Installed IntervalSets ──────────────── v0.7.13 Installed Reexport ──────────────────── v1.2.2 Installed ImageMorphology ───────────── v0.2.11 Installed FixedPointNumbers ─────────── v0.8.5 Installed SpecialFunctions ──────────── v1.8.8 Installed Preferences ───────────────── v1.5.1 Installed FreeTypeAbstraction ───────── v0.8.4 Installed Missings ──────────────────── v1.2.0 Installed FreeType2_jll ─────────────── v2.13.4+0 Installed JLLWrappers ───────────────── v1.7.1 Installed TableTraits ───────────────── v1.0.1 Installed MappedArrays ──────────────── v0.4.3 Installed GeometryBasics ────────────── v0.3.13 Installed SortingAlgorithms ─────────── v1.2.2 Installed IterTools ─────────────────── v1.10.0 Installed AxisArrays ────────────────── v0.4.8 Installed ImageCore ─────────────────── v0.8.22 Installed RangeArrays ───────────────── v0.3.2 Installed DocStringExtensions ───────── v0.9.5 Installed IndirectArrays ────────────── v0.5.1 Installed MicroscopyLabels ──────────── v0.1.1 Installing 4 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact EarCut 80.5 KiB Installed artifact Bzip2 503.5 KiB Installed artifact FreeType2 1.5 MiB Updating `~/.julia/environments/v1.14/Project.toml` [85a02ca2] + MicroscopyLabels v0.1.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [39de3d68] + AxisArrays v0.4.8 ⌅ [fa961155] + CEnum v0.4.2 [d360d2e6] + ChainRulesCore v1.26.0 ⌅ [3da002f7] + ColorTypes v0.10.12 ⌅ [c3611d14] + ColorVectorSpace v0.8.7 ⌅ [5ae59095] + Colors v0.12.11 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [ffbed154] + DocStringExtensions v0.9.5 [53c48c17] + FixedPointNumbers v0.8.5 ⌅ [b38be410] + FreeType v3.0.1 ⌅ [663a7486] + FreeTypeAbstraction v0.8.4 ⌅ [5c1252a2] + GeometryBasics v0.3.13 [a2bd30eb] + Graphics v1.1.3 ⌃ [2803e5a7] + ImageAxes v0.6.9 ⌅ [a09fc81d] + ImageCore v0.8.22 ⌃ [bc367c6b] + ImageMetadata v0.9.5 ⌅ [787d08f9] + ImageMorphology v0.2.11 ⌅ [9b13fd28] + IndirectArrays v0.5.1 [8197267c] + IntervalSets v0.7.13 ⌅ [92d709cd] + IrrationalConstants v0.1.1 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [dbb5928d] + MappedArrays v0.4.3 [85a02ca2] + MicroscopyLabels v0.1.1 [e1d29d7a] + Missings v1.2.0 [e94cdb99] + MosaicViews v0.3.4 [77ba4419] + NaNMath v1.1.3 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [5432bcbf] + PaddedViews v0.5.12 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [b3c3ace0] + RangeArrays v0.3.2 [189a3867] + Reexport v1.2.2 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 ⌅ [276daf66] + SpecialFunctions v1.8.8 [cae243ae] + StackViews v0.1.2 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 ⌅ [2913bbd2] + StatsBase v0.33.21 ⌅ [09ab397b] + StructArrays v0.6.21 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 ⌅ [06e1c1a7] + TiledIteration v0.3.1 [1986cc42] + Unitful v1.27.0 [6e34b625] + Bzip2_jll v1.0.9+0 [5ae413db] + EarCut_jll v2.2.4+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 9.84s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 Precompilation failed after 13.37s ################################################################################ # Testing # Testing MicroscopyLabels Status `/tmp/jl_7DmSV5/Project.toml` [39de3d68] AxisArrays v0.4.8 [e30172f5] Documenter v1.16.1 ⌃ [bc367c6b] ImageMetadata v0.9.5 ⌅ [787d08f9] ImageMorphology v0.2.11 [85a02ca2] MicroscopyLabels v0.1.1 [1986cc42] Unitful v1.27.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_7DmSV5/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [39de3d68] AxisArrays v0.4.8 ⌅ [fa961155] CEnum v0.4.2 [d360d2e6] ChainRulesCore v1.26.0 [944b1d66] CodecZlib v0.7.8 ⌅ [3da002f7] ColorTypes v0.10.12 ⌅ [c3611d14] ColorVectorSpace v0.8.7 ⌅ [5ae59095] Colors v0.12.11 [34da2185] Compat v4.18.1 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.16.1 [53c48c17] FixedPointNumbers v0.8.5 ⌅ [b38be410] FreeType v3.0.1 ⌅ [663a7486] FreeTypeAbstraction v0.8.4 ⌅ [5c1252a2] GeometryBasics v0.3.13 [d7ba0133] Git v1.5.0 [a2bd30eb] Graphics v1.1.3 [b5f81e59] IOCapture v1.0.0 ⌃ [2803e5a7] ImageAxes v0.6.9 ⌅ [a09fc81d] ImageCore v0.8.22 ⌃ [bc367c6b] ImageMetadata v0.9.5 ⌅ [787d08f9] ImageMorphology v0.2.11 ⌅ [9b13fd28] IndirectArrays v0.5.1 [8197267c] IntervalSets v0.7.13 ⌅ [92d709cd] IrrationalConstants v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.3.0 [0e77f7df] LazilyInitializedFields v1.3.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [dbb5928d] MappedArrays v0.4.3 [d0879d2d] MarkdownAST v0.1.2 [85a02ca2] MicroscopyLabels v0.1.1 [e1d29d7a] Missings v1.2.0 [e94cdb99] MosaicViews v0.3.4 [77ba4419] NaNMath v1.1.3 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 [5432bcbf] PaddedViews v0.5.12 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [b3c3ace0] RangeArrays v0.3.2 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [699a6c99] SimpleTraits v0.9.5 [a2af1166] SortingAlgorithms v1.2.2 ⌅ [276daf66] SpecialFunctions v1.8.8 [cae243ae] StackViews v0.1.2 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 ⌅ [2913bbd2] StatsBase v0.33.21 ⌅ [09ab397b] StructArrays v0.6.21 [ec057cc2] StructUtils v2.6.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 ⌅ [06e1c1a7] TiledIteration v0.3.1 [3bb67fe8] TranscodingStreams v0.11.3 [1986cc42] Unitful v1.27.0 [6e34b625] Bzip2_jll v1.0.9+0 [5ae413db] EarCut_jll v2.2.4+0 [2e619515] Expat_jll v2.7.3+0 [d7e528f0] FreeType2_jll v2.13.4+0 [020c3dae] Git_LFS_jll v3.7.0+0 [f8c6e375] Git_jll v2.52.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [9bd350c2] OpenSSH_jll v10.2.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: method definition for centered at /home/pkgeval/.julia/packages/GeometryBasics/pjtu1/src/primitives/rectangles.jl:515 declares type variable N but does not use it. WARNING: method definition for volume at /home/pkgeval/.julia/packages/GeometryBasics/pjtu1/src/meshes.jl:209 declares type variable FT but does not use it. WARNING: method definition for volume at /home/pkgeval/.julia/packages/GeometryBasics/pjtu1/src/meshes.jl:209 declares type variable VT but does not use it. WARNING: method definition for volume at /home/pkgeval/.julia/packages/GeometryBasics/pjtu1/src/meshes.jl:221 declares type variable FT but does not use it. WARNING: method definition for volume at /home/pkgeval/.julia/packages/GeometryBasics/pjtu1/src/meshes.jl:221 declares type variable VT but does not use it. 2 dependencies had output during precompilation: ┌ GeometryBasics │ WARNING: method definition for centered at /home/pkgeval/.julia/packages/GeometryBasics/pjtu1/src/primitives/rectangles.jl:515 declares type variable N but does not use it. │ WARNING: method definition for volume at /home/pkgeval/.julia/packages/GeometryBasics/pjtu1/src/meshes.jl:209 declares type variable FT but does not use it. │ WARNING: method definition for volume at /home/pkgeval/.julia/packages/GeometryBasics/pjtu1/src/meshes.jl:209 declares type variable VT but does not use it. │ WARNING: method definition for volume at /home/pkgeval/.julia/packages/GeometryBasics/pjtu1/src/meshes.jl:221 declares type variable FT but does not use it. │ WARNING: method definition for volume at /home/pkgeval/.julia/packages/GeometryBasics/pjtu1/src/meshes.jl:221 declares type variable VT but does not use it. └ ┌ ImageCore │ WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). │ You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. │ To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. └ ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter ~/.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl:680 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Doctests: MicroscopyLabels | 1 1 48.2s Test Summary: | Pass Total Time timestamps | 2 2 3.3s Testing MicroscopyLabels tests passed Testing completed after 418.9s PkgEval succeeded after 480.19s