Package evaluation to test MendelImpute on Julia 1.14.0-DEV.1455 (9d9110fde9*) started at 2026-01-02T00:34:35.515


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# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 9.41s


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# Installation
#

Installing MendelImpute...
   Resolving package versions...
   Installed libaom_jll ─────────────────────── v3.13.1+0
   Installed Qt6Base_jll ────────────────────── v6.8.2+2
   Installed Libuuid_jll ────────────────────── v2.41.2+0
   Installed HarfBuzz_jll ───────────────────── v8.5.1+0
   Installed libass_jll ─────────────────────── v0.17.4+0
   Installed CommonWorldInvalidations ───────── v1.0.0
   Installed Glob ───────────────────────────── v1.4.0
   Installed MultivariateStats ──────────────── v0.10.3
   Installed MKL_jll ────────────────────────── v2025.2.0+0
   Installed Cairo_jll ──────────────────────── v1.18.5+0
   Installed Bzip2_jll ──────────────────────── v1.0.9+0
   Installed Libtiff_jll ────────────────────── v4.7.2+0
   Installed PlotThemes ─────────────────────── v3.3.0
   Installed SIMDTypes ──────────────────────── v0.1.0
   Installed InlineStrings ──────────────────── v1.4.5
   Installed Xorg_libXinerama_jll ───────────── v1.1.6+0
   Installed Graphite2_jll ──────────────────── v1.3.15+0
   Installed libinput_jll ───────────────────── v1.28.1+0
   Installed OrderedCollections ─────────────── v1.8.1
   Installed CpuId ──────────────────────────── v0.3.1
   Installed NearestNeighbors ───────────────── v0.4.26
   Installed HypothesisTests ────────────────── v0.11.6
   Installed Fontconfig_jll ─────────────────── v2.17.1+0
   Installed SentinelArrays ─────────────────── v1.4.9
   Installed fzf_jll ────────────────────────── v0.61.1+0
   Installed Distances ──────────────────────── v0.10.12
   Installed FileIO ─────────────────────────── v1.17.1
   Installed BSON ───────────────────────────── v0.3.9
   Installed StaticArrayInterface ───────────── v1.8.0
   Installed GroupSlices ────────────────────── v0.0.3
   Installed NaNMath ────────────────────────── v1.1.3
   Installed Widgets ────────────────────────── v0.6.7
   Installed QuadGK ─────────────────────────── v2.11.2
   Installed OpenSpecFun_jll ────────────────── v0.5.6+0
   Installed Opus_jll ───────────────────────── v1.5.2+0
   Installed WoodburyMatrices ───────────────── v1.0.0
   Installed Tables ─────────────────────────── v1.12.1
   Installed Xorg_libxcb_jll ────────────────── v1.17.1+0
   Installed Arpack ─────────────────────────── v0.5.4
   Installed Ogg_jll ────────────────────────── v1.3.6+0
   Installed Unzip ──────────────────────────── v0.2.0
   Installed InverseFunctions ───────────────── v0.1.17
   Installed Reexport ───────────────────────── v1.2.2
   Installed LZO_jll ────────────────────────── v2.10.3+0
   Installed DBInterface ────────────────────── v2.6.1
   Installed Xorg_xcb_util_wm_jll ───────────── v0.4.2+0
   Installed FFMPEG ─────────────────────────── v0.4.5
   Installed Preferences ────────────────────── v1.5.1
   Installed Missings ───────────────────────── v1.2.0
   Installed Static ─────────────────────────── v1.3.1
   Installed LERC_jll ───────────────────────── v4.0.1+0
   Installed TableTraits ────────────────────── v1.0.1
   Installed LLVMOpenMP_jll ─────────────────── v18.1.8+0
   Installed LaTeXStrings ───────────────────── v1.4.0
   Installed Crayons ────────────────────────── v4.1.1
   Installed Xorg_libICE_jll ────────────────── v1.1.2+0
   Installed eudev_jll ──────────────────────── v3.2.14+0
   Installed SortingAlgorithms ──────────────── v1.2.2
   Installed Grisu ──────────────────────────── v1.0.2
   Installed Format ─────────────────────────── v1.3.7
   Installed EpollShim_jll ──────────────────── v0.0.20230411+1
   Installed UnPack ─────────────────────────── v1.0.2
   Installed MacroTools ─────────────────────── v0.5.16
   Installed URIs ───────────────────────────── v1.6.1
   Installed CodecZstd ──────────────────────── v0.8.7
   Installed DataStructures ─────────────────── v0.19.3
   Installed ManualMemory ───────────────────── v0.1.8
   Installed FillArrays ─────────────────────── v1.15.0
   Installed AbstractTrees ──────────────────── v0.4.5
   Installed VCFTools ───────────────────────── v0.2.10
   Installed oneTBB_jll ─────────────────────── v2022.0.0+1
   Installed DelimitedFiles ─────────────────── v1.9.1
   Installed VectorizationBase ──────────────── v0.21.72
   Installed Xorg_xcb_util_jll ──────────────── v0.4.1+0
   Installed x264_jll ───────────────────────── v10164.0.1+0
   Installed UnicodeFun ─────────────────────── v0.4.1
   Installed Observables ────────────────────── v0.5.5
   Installed CodecZlib ──────────────────────── v0.7.8
   Installed StatsBase ──────────────────────── v0.34.9
   Installed Xorg_libXau_jll ────────────────── v1.0.13+0
   Installed ArrayInterface ─────────────────── v7.22.0
   Installed Memento ────────────────────────── v1.4.1
   Installed HostCPUFeatures ────────────────── v0.1.18
   Installed Xorg_libXfixes_jll ─────────────── v6.0.2+0
   Installed mtdev_jll ──────────────────────── v1.1.7+0
   Installed IntelOpenMP_jll ────────────────── v2025.2.0+0
   Installed Qt6ShaderTools_jll ─────────────── v6.8.2+1
   Installed DataValueInterfaces ────────────── v1.0.0
   Installed Pixman_jll ─────────────────────── v0.44.2+0
   Installed Libffi_jll ─────────────────────── v3.4.7+0
   Installed LayoutPointers ─────────────────── v0.1.17
   Installed LoggingExtras ──────────────────── v1.2.0
   Installed StructUtils ────────────────────── v2.6.0
   Installed Clustering ─────────────────────── v0.15.8
   Installed JLSO ───────────────────────────── v2.7.0
   Installed Expat_jll ──────────────────────── v2.7.3+0
   Installed IrrationalConstants ────────────── v0.2.6
   Installed Xorg_libXcursor_jll ────────────── v1.2.4+0
   Installed libdecor_jll ───────────────────── v0.2.2+0
   Installed libpng_jll ─────────────────────── v1.6.53+0
   Installed Contour ────────────────────────── v0.6.3
   Installed HTTP ───────────────────────────── v1.10.19
   Installed ColorVectorSpace ───────────────── v0.11.0
   Installed StableRNGs ─────────────────────── v1.0.4
   Installed ArrayLayouts ───────────────────── v1.12.2
   Installed Xorg_xcb_util_keysyms_jll ──────── v0.4.1+0
   Installed Roots ──────────────────────────── v2.2.10
   Installed BitFlags ───────────────────────── v0.1.9
   Installed BufferedStreams ────────────────── v1.2.2
   Installed libfdk_aac_jll ─────────────────── v2.0.4+0
   Installed Interpolations ─────────────────── v0.16.2
   Installed Scratch ────────────────────────── v1.3.0
   Installed FFMPEG_jll ─────────────────────── v8.0.1+0
   Installed SimpleBufferStream ─────────────── v1.2.0
   Installed PooledArrays ───────────────────── v1.4.3
   Installed PDMats ─────────────────────────── v0.11.37
   Installed Qt6Declarative_jll ─────────────── v6.8.2+1
   Installed WorkerUtilities ────────────────── v1.6.1
   Installed DocStringExtensions ────────────── v0.9.5
   Installed CodecXz ────────────────────────── v0.7.4
   Installed TableOperations ────────────────── v1.2.0
   Installed SQLite ─────────────────────────── v1.6.1
   Installed CompositionsBase ───────────────── v0.1.2
   Installed Rmath_jll ──────────────────────── v0.5.1+0
   Installed RelocatableFolders ─────────────── v1.0.1
   Installed CommonSolve ────────────────────── v0.2.6
   Installed Ghostscript_jll ────────────────── v9.55.1+0
   Installed Plots ──────────────────────────── v1.41.3
   Installed KernelDensity ──────────────────── v0.6.10
   Installed JLFzf ──────────────────────────── v0.1.11
   Installed BitTwiddlingConvenienceFunctions ─ v0.1.6
   Installed AliasTables ────────────────────── v1.1.3
   Installed SLEEFPirates ───────────────────── v0.6.43
   Installed ConcurrentUtilities ────────────── v2.5.0
   Installed SIMD ───────────────────────────── v3.7.2
   Installed IteratorInterfaceExtensions ────── v1.0.0
   Installed Combinatorics ──────────────────── v1.1.0
   Installed RecipesBase ────────────────────── v1.3.4
   Installed DataAPI ────────────────────────── v1.16.0
   Installed Xorg_libXi_jll ─────────────────── v1.8.3+0
   Installed libevdev_jll ───────────────────── v1.13.4+0
   Installed InvertedIndices ────────────────── v1.3.1
   Installed Wayland_jll ────────────────────── v1.24.0+0
   Installed StaticArraysCore ───────────────── v1.4.4
   Installed Measures ───────────────────────── v0.3.3
   Installed Colors ─────────────────────────── v0.13.1
   Installed StaticArrays ───────────────────── v1.9.16
   Installed Xorg_libxkbfile_jll ────────────── v1.1.3+0
   Installed ColorSchemes ───────────────────── v3.31.0
   Installed AbstractFFTs ───────────────────── v1.5.0
   Installed Libglvnd_jll ───────────────────── v1.7.1+1
   Installed Latexify ───────────────────────── v0.16.10
   Installed AxisAlgorithms ─────────────────── v1.1.0
   Installed ColorTypes ─────────────────────── v0.12.1
   Installed Xorg_xkbcomp_jll ───────────────── v1.4.7+0
   Installed StringManipulation ─────────────── v0.4.2
   Installed SciMLPublic ────────────────────── v1.0.1
   Installed Requires ───────────────────────── v1.3.1
   Installed Glib_jll ───────────────────────── v2.86.2+0
   Installed Vulkan_Loader_jll ──────────────── v1.3.243+0
   Installed LogExpFunctions ────────────────── v0.3.29
   Installed Xorg_xcb_util_cursor_jll ───────── v0.1.6+0
   Installed JSON ───────────────────────────── v1.3.0
   Installed Rmath ──────────────────────────── v0.9.0
   Installed PrettyTables ───────────────────── v3.1.2
   Installed Parsers ────────────────────────── v2.8.3
   Installed Arpack_jll ─────────────────────── v3.5.2+0
   Installed StatsPlots ─────────────────────── v0.15.8
   Installed Distributions ──────────────────── v0.25.122
   Installed Xorg_xcb_util_renderutil_jll ───── v0.3.10+0
   Installed BioGenerics ────────────────────── v0.1.5
   Installed CloseOpenIntervals ─────────────── v0.1.13
   Installed StatsFuns ──────────────────────── v1.5.2
   Installed CSV ────────────────────────────── v0.10.15
   Installed Xorg_libXdmcp_jll ──────────────── v1.1.6+0
   Installed Xorg_xkeyboard_config_jll ──────── v2.44.0+0
   Installed Xorg_libSM_jll ─────────────────── v1.2.6+0
   Installed XZ_jll ─────────────────────────── v5.8.2+0
   Installed WeakRefStrings ─────────────────── v1.4.2
   Installed JLLWrappers ────────────────────── v1.7.1
   Installed x265_jll ───────────────────────── v4.1.0+0
   Installed Pango_jll ──────────────────────── v1.57.0+0
   Installed DataFrames ─────────────────────── v1.8.1
   Installed RecipesPipeline ────────────────── v0.6.12
   Installed ThreadingUtilities ─────────────── v0.5.5
   Installed BGZFStreams ────────────────────── v0.3.2
   Installed Xorg_xtrans_jll ────────────────── v1.6.0+0
   Installed Accessors ──────────────────────── v0.1.43
   Installed VariantCallFormat ──────────────── v0.5.9
   Installed GR_jll ─────────────────────────── v0.73.19+1
   Installed Dbus_jll ───────────────────────── v1.16.2+0
   Installed FilePathsBase ──────────────────── v0.9.24
   Installed JpegTurbo_jll ──────────────────── v3.1.4+0
   Installed Adapt ──────────────────────────── v4.4.0
   Installed ConstructionBase ───────────────── v1.6.0
   Installed JLD2 ───────────────────────────── v0.4.55
   Installed HypergeometricFunctions ────────── v0.3.28
   Installed Libmount_jll ───────────────────── v2.41.2+0
   Installed ExceptionUnwrapping ────────────── v0.1.11
   Installed Xorg_libX11_jll ────────────────── v1.8.12+0
   Installed PlotUtils ──────────────────────── v1.4.4
   Installed Compat ─────────────────────────── v4.18.1
   Installed TranscodingStreams ─────────────── v0.9.13
   Installed TensorCore ─────────────────────── v0.1.1
   Installed LoopVectorization ──────────────── v0.12.173
   Installed Statistics ─────────────────────── v1.11.1
   Installed StatsAPI ───────────────────────── v1.8.0
   Installed LazyArrays ─────────────────────── v1.10.0
   Installed PrecompileTools ────────────────── v1.3.3
   Installed OffsetArrays ───────────────────── v1.17.0
   Installed ProgressMeter ──────────────────── v1.11.0
   Installed Xorg_xcb_util_image_jll ────────── v0.4.1+0
   Installed MbedTLS ────────────────────────── v1.1.9
   Installed OpenSSL ────────────────────────── v1.6.1
   Installed xkbcommon_jll ──────────────────── v1.13.0+0
   Installed CodecBzip2 ─────────────────────── v0.8.5
   Installed GettextRuntime_jll ─────────────── v0.22.4+0
   Installed Ratios ─────────────────────────── v0.4.5
   Installed MendelImpute ───────────────────── v1.2.6
   Installed ChainRulesCore ─────────────────── v1.26.0
   Installed FriBidi_jll ────────────────────── v1.0.17+0
   Installed GLFW_jll ───────────────────────── v3.4.1+0
   Installed LAME_jll ───────────────────────── v3.100.3+0
   Installed MatrixFactorizations ───────────── v2.2.0
   Installed Xorg_libXrender_jll ────────────── v0.9.12+0
   Installed libvorbis_jll ──────────────────── v1.3.8+0
   Installed CPUSummary ─────────────────────── v0.2.7
   Installed IfElse ─────────────────────────── v0.1.1
   Installed PtrArrays ──────────────────────── v1.3.0
   Installed FreeType2_jll ──────────────────── v2.13.4+0
   Installed FixedPointNumbers ──────────────── v0.8.5
   Installed Showoff ────────────────────────── v1.0.3
   Installed SpecialFunctions ───────────────── v2.6.1
   Installed FFTW ───────────────────────────── v1.10.0
   Installed FFTW_jll ───────────────────────── v3.3.11+0
   Installed Libiconv_jll ───────────────────── v1.18.0+0
   Installed MbedTLS_jll ────────────────────── v2.28.1010+0
   Installed Xorg_libXext_jll ───────────────── v1.3.7+0
   Installed SQLite_jll ─────────────────────── v3.48.0+0
   Installed Xorg_libXrandr_jll ─────────────── v1.5.5+0
   Installed Automa ─────────────────────────── v1.1.0
   Installed Qt6Wayland_jll ─────────────────── v6.8.2+2
   Installed PolyesterWeave ─────────────────── v0.2.2
   Installed GR ─────────────────────────────── v0.73.19
   Installed SnpArrays ──────────────────────── v0.3.22
   Installed BGEN ───────────────────────────── v0.1.17
  Installing 80 artifacts
   Installed artifact Xorg_xcb_util_renderutil 32.1 KiB
   Installed artifact Xorg_libXau              36.6 KiB
   Installed artifact LZO                      208.9 KiB
   Installed artifact Opus                     925.5 KiB
   Installed artifact FFTW                     2.2 MiB
   Installed artifact GettextRuntime           543.0 KiB
   Installed artifact fzf                      3.3 MiB
   Installed artifact Pango                    2.0 MiB
   Installed artifact Xorg_libICE              384.9 KiB
   Installed artifact libdecor                 44.1 KiB
   Installed artifact LLVMOpenMP               661.6 KiB
   Installed artifact Libiconv                 1.9 MiB
   Installed artifact Ogg                      250.3 KiB
   Installed artifact Dbus                     489.8 KiB
   Installed artifact libinput                 1.0 MiB
   Installed artifact Vulkan_Loader            177.3 KiB
   Installed artifact libfdk_aac               2.8 MiB
   Installed artifact SQLite                   5.0 MiB
   Installed artifact Xorg_xtrans              48.2 KiB
   Installed artifact LERC                     272.9 KiB
   Installed artifact Xorg_xkeyboard_config    537.5 KiB
   Installed artifact Wayland                  390.6 KiB
   Installed artifact libvorbis                271.0 KiB
   Installed artifact MbedTLS                  2.2 MiB
   Installed artifact Libmount                 6.5 MiB
   Installed artifact libevdev                 117.1 KiB
   Installed artifact Xorg_xcb_util            39.5 KiB
   Installed artifact Libglvnd                 833.5 KiB
   Installed artifact Xorg_libxcb              2.1 MiB
   Installed artifact x265                     1.4 MiB
   Installed artifact Qt6ShaderTools           2.1 MiB
   Installed artifact libass                   427.8 KiB
   Installed artifact Xorg_libXcursor          227.1 KiB
   Installed artifact Xorg_libXdmcp            67.7 KiB
   Installed artifact Expat                    283.3 KiB
   Installed artifact libpng                   329.0 KiB
   Installed artifact Pixman                   372.2 KiB
   Installed artifact Libuuid                  3.7 MiB
   Installed artifact Libffi                   44.2 KiB
   Installed artifact Xorg_libXfixes           59.0 KiB
   Installed artifact Xorg_xcb_util_keysyms    17.8 KiB
   Installed artifact XZ                       1.5 MiB
   Installed artifact Cairo                    2.2 MiB
   Installed artifact Xorg_libXinerama         50.1 KiB
   Installed artifact Xorg_xcb_util_wm         147.9 KiB
   Installed artifact x264                     2.1 MiB
   Installed artifact Qt6Wayland               2.2 MiB
   Installed artifact Xorg_libXrender          435.9 KiB
   Installed artifact Ghostscript              31.4 MiB
   Installed artifact Rmath                    121.9 KiB
   Installed artifact Xorg_libXrandr           354.5 KiB
   Installed artifact Arpack                   138.3 KiB
   Installed artifact Glib                     7.7 MiB
   Installed artifact HarfBuzz                 1.7 MiB
   Installed artifact Xorg_libSM               164.1 KiB
   Installed artifact mtdev                    79.6 KiB
   Installed artifact LAME                     292.5 KiB
   Installed artifact FriBidi                  78.9 KiB
   Installed artifact Libtiff                  2.3 MiB
   Installed artifact Bzip2                    503.5 KiB
   Installed artifact xkbcommon                298.7 KiB
   Installed artifact OpenSpecFun              194.9 KiB
   Installed artifact JpegTurbo                1.4 MiB
   Installed artifact Xorg_libxkbfile          486.7 KiB
   Installed artifact FFMPEG                   11.7 MiB
   Installed artifact libaom                   6.4 MiB
   Installed artifact eudev                    3.9 MiB
   Installed artifact Xorg_xcb_util_cursor     27.6 KiB
   Installed artifact Qt6Declarative           21.6 MiB
   Installed artifact Fontconfig               984.8 KiB
   Installed artifact GLFW                     180.1 KiB
   Installed artifact Xorg_xkbcomp             274.8 KiB
   Installed artifact Xorg_xcb_util_image      54.3 KiB
   Installed artifact Graphite2                120.2 KiB
   Installed artifact Xorg_libXext             699.9 KiB
   Installed artifact FreeType2                1.5 MiB
   Installed artifact Xorg_libXi               1.6 MiB
   Installed artifact Qt6Base                  20.6 MiB
   Installed artifact Xorg_libX11              13.9 MiB
   Installed artifact GR                       16.3 MiB
    Updating `~/.julia/environments/v1.14/Project.toml`
  [e47305d1] + MendelImpute v1.2.6
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [621f4979] + AbstractFFTs v1.5.0
  [1520ce14] + AbstractTrees v0.4.5
  [7d9f7c33] + Accessors v0.1.43
  [79e6a3ab] + Adapt v4.4.0
  [66dad0bd] + AliasTables v1.1.3
  [7d9fca2a] + Arpack v0.5.4
  [4fba245c] + ArrayInterface v7.22.0
  [4c555306] + ArrayLayouts v1.12.2
  [67c07d97] + Automa v1.1.0
  [13072b0f] + AxisAlgorithms v1.1.0
⌅ [6db4b851] + BGEN v0.1.17
  [28d598bf] + BGZFStreams v0.3.2
  [fbb218c0] + BSON v0.3.9
  [47718e42] + BioGenerics v0.1.5
  [d1d4a3ce] + BitFlags v0.1.9
  [62783981] + BitTwiddlingConvenienceFunctions v0.1.6
  [e1450e63] + BufferedStreams v1.2.2
  [2a0fbf3d] + CPUSummary v0.2.7
  [336ed68f] + CSV v0.10.15
  [d360d2e6] + ChainRulesCore v1.26.0
  [fb6a15b2] + CloseOpenIntervals v0.1.13
  [aaaa29a8] + Clustering v0.15.8
  [523fee87] + CodecBzip2 v0.8.5
  [ba30903b] + CodecXz v0.7.4
  [944b1d66] + CodecZlib v0.7.8
  [6b39b394] + CodecZstd v0.8.7
  [35d6a980] + ColorSchemes v3.31.0
  [3da002f7] + ColorTypes v0.12.1
  [c3611d14] + ColorVectorSpace v0.11.0
  [5ae59095] + Colors v0.13.1
  [861a8166] + Combinatorics v1.1.0
  [38540f10] + CommonSolve v0.2.6
  [f70d9fcc] + CommonWorldInvalidations v1.0.0
  [34da2185] + Compat v4.18.1
  [a33af91c] + CompositionsBase v0.1.2
  [f0e56b4a] + ConcurrentUtilities v2.5.0
  [187b0558] + ConstructionBase v1.6.0
  [d38c429a] + Contour v0.6.3
  [adafc99b] + CpuId v0.3.1
  [a8cc5b0e] + Crayons v4.1.1
  [a10d1c49] + DBInterface v2.6.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.8.1
  [864edb3b] + DataStructures v0.19.3
  [e2d170a0] + DataValueInterfaces v1.0.0
  [8bb1440f] + DelimitedFiles v1.9.1
  [b4f34e82] + Distances v0.10.12
  [31c24e10] + Distributions v0.25.122
  [ffbed154] + DocStringExtensions v0.9.5
  [460bff9d] + ExceptionUnwrapping v0.1.11
  [c87230d0] + FFMPEG v0.4.5
  [7a1cc6ca] + FFTW v1.10.0
  [5789e2e9] + FileIO v1.17.1
  [48062228] + FilePathsBase v0.9.24
  [1a297f60] + FillArrays v1.15.0
  [53c48c17] + FixedPointNumbers v0.8.5
  [1fa38f19] + Format v1.3.7
  [28b8d3ca] + GR v0.73.19
  [c27321d9] + Glob v1.4.0
  [42e2da0e] + Grisu v1.0.2
  [d853e229] + GroupSlices v0.0.3
  [cd3eb016] + HTTP v1.10.19
  [3e5b6fbb] + HostCPUFeatures v0.1.18
  [34004b35] + HypergeometricFunctions v0.3.28
  [09f84164] + HypothesisTests v0.11.6
  [615f187c] + IfElse v0.1.1
  [842dd82b] + InlineStrings v1.4.5
  [a98d9a8b] + Interpolations v0.16.2
  [3587e190] + InverseFunctions v0.1.17
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.6
  [82899510] + IteratorInterfaceExtensions v1.0.0
⌅ [033835bb] + JLD2 v0.4.55
  [1019f520] + JLFzf v0.1.11
  [692b3bcd] + JLLWrappers v1.7.1
  [9da8a3cd] + JLSO v2.7.0
  [682c06a0] + JSON v1.3.0
  [5ab0869b] + KernelDensity v0.6.10
  [b964fa9f] + LaTeXStrings v1.4.0
  [23fbe1c1] + Latexify v0.16.10
  [10f19ff3] + LayoutPointers v0.1.17
⌅ [5078a376] + LazyArrays v1.10.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e6f89c97] + LoggingExtras v1.2.0
  [bdcacae8] + LoopVectorization v0.12.173
  [1914dd2f] + MacroTools v0.5.16
  [d125e4d3] + ManualMemory v0.1.8
⌅ [a3b82374] + MatrixFactorizations v2.2.0
  [739be429] + MbedTLS v1.1.9
  [442fdcdd] + Measures v0.3.3
  [f28f55f0] + Memento v1.4.1
  [e47305d1] + MendelImpute v1.2.6
  [e1d29d7a] + Missings v1.2.0
  [6f286f6a] + MultivariateStats v0.10.3
  [77ba4419] + NaNMath v1.1.3
  [b8a86587] + NearestNeighbors v0.4.26
  [510215fc] + Observables v0.5.5
  [6fe1bfb0] + OffsetArrays v1.17.0
  [4d8831e6] + OpenSSL v1.6.1
  [bac558e1] + OrderedCollections v1.8.1
  [90014a1f] + PDMats v0.11.37
  [69de0a69] + Parsers v2.8.3
  [ccf2f8ad] + PlotThemes v3.3.0
  [995b91a9] + PlotUtils v1.4.4
  [91a5bcdd] + Plots v1.41.3
  [1d0040c9] + PolyesterWeave v0.2.2
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.1
  [08abe8d2] + PrettyTables v3.1.2
  [92933f4c] + ProgressMeter v1.11.0
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [c84ed2f1] + Ratios v0.4.5
  [3cdcf5f2] + RecipesBase v1.3.4
  [01d81517] + RecipesPipeline v0.6.12
  [189a3867] + Reexport v1.2.2
  [05181044] + RelocatableFolders v1.0.1
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.9.0
  [f2b01f46] + Roots v2.2.10
  [fdea26ae] + SIMD v3.7.2
  [94e857df] + SIMDTypes v0.1.0
  [476501e8] + SLEEFPirates v0.6.43
  [0aa819cd] + SQLite v1.6.1
  [431bcebd] + SciMLPublic v1.0.1
  [6c6a2e73] + Scratch v1.3.0
  [91c51154] + SentinelArrays v1.4.9
  [992d4aef] + Showoff v1.0.3
  [777ac1f9] + SimpleBufferStream v1.2.0
  [4e780e97] + SnpArrays v0.3.22
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.6.1
  [860ef19b] + StableRNGs v1.0.4
  [aedffcd0] + Static v1.3.1
  [0d7ed370] + StaticArrayInterface v1.8.0
  [90137ffa] + StaticArrays v1.9.16
  [1e83bf80] + StaticArraysCore v1.4.4
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.8.0
  [2913bbd2] + StatsBase v0.34.9
  [4c63d2b9] + StatsFuns v1.5.2
  [f3b207a7] + StatsPlots v0.15.8
  [892a3eda] + StringManipulation v0.4.2
  [ec057cc2] + StructUtils v2.6.0
  [ab02a1b2] + TableOperations v1.2.0
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [62fd8b95] + TensorCore v0.1.1
  [8290d209] + ThreadingUtilities v0.5.5
⌅ [3bb67fe8] + TranscodingStreams v0.9.13
  [5c2747f8] + URIs v1.6.1
  [3a884ed6] + UnPack v1.0.2
  [1cfade01] + UnicodeFun v0.4.1
  [41fe7b60] + Unzip v0.2.0
  [a620830f] + VCFTools v0.2.10
  [28eba6e3] + VariantCallFormat v0.5.9
  [3d5dd08c] + VectorizationBase v0.21.72
  [ea10d353] + WeakRefStrings v1.4.2
  [cc8bc4a8] + Widgets v0.6.7
  [efce3f68] + WoodburyMatrices v1.0.0
  [76eceee3] + WorkerUtilities v1.6.1
⌅ [68821587] + Arpack_jll v3.5.2+0
  [6e34b625] + Bzip2_jll v1.0.9+0
  [83423d85] + Cairo_jll v1.18.5+0
  [ee1fde0b] + Dbus_jll v1.16.2+0
  [2702e6a9] + EpollShim_jll v0.0.20230411+1
  [2e619515] + Expat_jll v2.7.3+0
  [b22a6f82] + FFMPEG_jll v8.0.1+0
  [f5851436] + FFTW_jll v3.3.11+0
  [a3f928ae] + Fontconfig_jll v2.17.1+0
  [d7e528f0] + FreeType2_jll v2.13.4+0
  [559328eb] + FriBidi_jll v1.0.17+0
  [0656b61e] + GLFW_jll v3.4.1+0
  [d2c73de3] + GR_jll v0.73.19+1
  [b0724c58] + GettextRuntime_jll v0.22.4+0
  [61579ee1] + Ghostscript_jll v9.55.1+0
  [7746bdde] + Glib_jll v2.86.2+0
  [3b182d85] + Graphite2_jll v1.3.15+0
  [2e76f6c2] + HarfBuzz_jll v8.5.1+0
  [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0
  [aacddb02] + JpegTurbo_jll v3.1.4+0
  [c1c5ebd0] + LAME_jll v3.100.3+0
  [88015f11] + LERC_jll v4.0.1+0
  [1d63c593] + LLVMOpenMP_jll v18.1.8+0
  [dd4b983a] + LZO_jll v2.10.3+0
⌅ [e9f186c6] + Libffi_jll v3.4.7+0
  [7e76a0d4] + Libglvnd_jll v1.7.1+1
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [4b2f31a3] + Libmount_jll v2.41.2+0
  [89763e89] + Libtiff_jll v4.7.2+0
  [38a345b3] + Libuuid_jll v2.41.2+0
  [856f044c] + MKL_jll v2025.2.0+0
  [c8ffd9c3] + MbedTLS_jll v2.28.1010+0
  [e7412a2a] + Ogg_jll v1.3.6+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [91d4177d] + Opus_jll v1.5.2+0
  [36c8627f] + Pango_jll v1.57.0+0
⌅ [30392449] + Pixman_jll v0.44.2+0
  [c0090381] + Qt6Base_jll v6.8.2+2
  [629bc702] + Qt6Declarative_jll v6.8.2+1
  [ce943373] + Qt6ShaderTools_jll v6.8.2+1
  [e99dba38] + Qt6Wayland_jll v6.8.2+2
  [f50d1b31] + Rmath_jll v0.5.1+0
  [76ed43ae] + SQLite_jll v3.48.0+0
  [a44049a8] + Vulkan_Loader_jll v1.3.243+0
  [a2964d1f] + Wayland_jll v1.24.0+0
  [ffd25f8a] + XZ_jll v5.8.2+0
  [f67eecfb] + Xorg_libICE_jll v1.1.2+0
  [c834827a] + Xorg_libSM_jll v1.2.6+0
  [4f6342f7] + Xorg_libX11_jll v1.8.12+0
  [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0
  [935fb764] + Xorg_libXcursor_jll v1.2.4+0
  [a3789734] + Xorg_libXdmcp_jll v1.1.6+0
  [1082639a] + Xorg_libXext_jll v1.3.7+0
  [d091e8ba] + Xorg_libXfixes_jll v6.0.2+0
  [a51aa0fd] + Xorg_libXi_jll v1.8.3+0
  [d1454406] + Xorg_libXinerama_jll v1.1.6+0
  [ec84b674] + Xorg_libXrandr_jll v1.5.5+0
  [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0
  [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0
  [cc61e674] + Xorg_libxkbfile_jll v1.1.3+0
  [e920d4aa] + Xorg_xcb_util_cursor_jll v0.1.6+0
  [12413925] + Xorg_xcb_util_image_jll v0.4.1+0
  [2def613f] + Xorg_xcb_util_jll v0.4.1+0
  [975044d2] + Xorg_xcb_util_keysyms_jll v0.4.1+0
  [0d47668e] + Xorg_xcb_util_renderutil_jll v0.3.10+0
  [c22f9ab0] + Xorg_xcb_util_wm_jll v0.4.2+0
  [35661453] + Xorg_xkbcomp_jll v1.4.7+0
  [33bec58e] + Xorg_xkeyboard_config_jll v2.44.0+0
  [c5fb5394] + Xorg_xtrans_jll v1.6.0+0
  [35ca27e7] + eudev_jll v3.2.14+0
  [214eeab7] + fzf_jll v0.61.1+0
  [a4ae2306] + libaom_jll v3.13.1+0
  [0ac62f75] + libass_jll v0.17.4+0
  [1183f4f0] + libdecor_jll v0.2.2+0
  [2db6ffa8] + libevdev_jll v1.13.4+0
  [f638f0a6] + libfdk_aac_jll v2.0.4+0
  [36db933b] + libinput_jll v1.28.1+0
  [b53b4c65] + libpng_jll v1.6.53+0
  [f27f6e37] + libvorbis_jll v1.3.8+0
  [009596ad] + mtdev_jll v1.1.7+0
  [1317d2d5] + oneTBB_jll v2022.0.0+1
⌅ [1270edf5] + x264_jll v10164.0.1+0
  [dfaa095f] + x265_jll v4.1.0+0
  [d8fb68d0] + xkbcommon_jll v1.13.0+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v1.0.0
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.14.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.13.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
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  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.17.0+0
  [e37daf67] + LibGit2_jll v1.9.2+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.12.2
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [efcefdf7] + PCRE2_jll v10.47.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.68.0+1
  [3f19e933] + p7zip_jll v17.7.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 38.15s


################################################################################
# Precompilation
#

ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:10
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:585
in expression starting at /PkgEval.jl/scripts/precompile.jl:6

caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:7
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:585

Precompilation failed after 7.24s



################################################################################
# Testing
#

     Testing MendelImpute
      Status `/tmp/jl_bcEz7I/Project.toml`
⌅ [6db4b851] BGEN v0.1.17
  [6e4b80f9] BenchmarkTools v1.6.3
  [336ed68f] CSV v0.10.15
  [a93c6f00] DataFrames v1.8.1
  [b4f34e82] Distances v0.10.12
  [5789e2e9] FileIO v1.17.1
  [53c48c17] FixedPointNumbers v0.8.5
  [d853e229] GroupSlices v0.0.3
⌅ [033835bb] JLD2 v0.4.55
  [9da8a3cd] JLSO v2.7.0
⌅ [5078a376] LazyArrays v1.10.0
  [e47305d1] MendelImpute v1.2.6
  [92933f4c] ProgressMeter v1.11.0
  [4e780e97] SnpArrays v0.3.22
  [276daf66] SpecialFunctions v2.6.1
  [10745b16] Statistics v1.11.1
  [2913bbd2] StatsBase v0.34.9
  [f3b207a7] StatsPlots v0.15.8
  [a620830f] VCFTools v0.2.10
  [28eba6e3] VariantCallFormat v0.5.9
  [37e2e46d] LinearAlgebra v1.13.0
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_bcEz7I/Manifest.toml`
  [621f4979] AbstractFFTs v1.5.0
  [1520ce14] AbstractTrees v0.4.5
  [7d9f7c33] Accessors v0.1.43
  [79e6a3ab] Adapt v4.4.0
  [66dad0bd] AliasTables v1.1.3
  [7d9fca2a] Arpack v0.5.4
  [4fba245c] ArrayInterface v7.22.0
  [4c555306] ArrayLayouts v1.12.2
  [67c07d97] Automa v1.1.0
  [13072b0f] AxisAlgorithms v1.1.0
⌅ [6db4b851] BGEN v0.1.17
  [28d598bf] BGZFStreams v0.3.2
  [fbb218c0] BSON v0.3.9
  [6e4b80f9] BenchmarkTools v1.6.3
  [47718e42] BioGenerics v0.1.5
  [d1d4a3ce] BitFlags v0.1.9
  [62783981] BitTwiddlingConvenienceFunctions v0.1.6
  [e1450e63] BufferedStreams v1.2.2
  [2a0fbf3d] CPUSummary v0.2.7
  [336ed68f] CSV v0.10.15
  [d360d2e6] ChainRulesCore v1.26.0
  [fb6a15b2] CloseOpenIntervals v0.1.13
  [aaaa29a8] Clustering v0.15.8
  [523fee87] CodecBzip2 v0.8.5
  [ba30903b] CodecXz v0.7.4
  [944b1d66] CodecZlib v0.7.8
  [6b39b394] CodecZstd v0.8.7
  [35d6a980] ColorSchemes v3.31.0
  [3da002f7] ColorTypes v0.12.1
  [c3611d14] ColorVectorSpace v0.11.0
  [5ae59095] Colors v0.13.1
  [861a8166] Combinatorics v1.1.0
  [38540f10] CommonSolve v0.2.6
  [f70d9fcc] CommonWorldInvalidations v1.0.0
  [34da2185] Compat v4.18.1
  [a33af91c] CompositionsBase v0.1.2
  [f0e56b4a] ConcurrentUtilities v2.5.0
  [187b0558] ConstructionBase v1.6.0
  [d38c429a] Contour v0.6.3
  [adafc99b] CpuId v0.3.1
  [a8cc5b0e] Crayons v4.1.1
  [a10d1c49] DBInterface v2.6.1
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.8.1
  [864edb3b] DataStructures v0.19.3
  [e2d170a0] DataValueInterfaces v1.0.0
  [8bb1440f] DelimitedFiles v1.9.1
  [b4f34e82] Distances v0.10.12
  [31c24e10] Distributions v0.25.122
  [ffbed154] DocStringExtensions v0.9.5
  [460bff9d] ExceptionUnwrapping v0.1.11
  [c87230d0] FFMPEG v0.4.5
  [7a1cc6ca] FFTW v1.10.0
  [5789e2e9] FileIO v1.17.1
  [48062228] FilePathsBase v0.9.24
  [1a297f60] FillArrays v1.15.0
  [53c48c17] FixedPointNumbers v0.8.5
  [1fa38f19] Format v1.3.7
  [28b8d3ca] GR v0.73.19
  [c27321d9] Glob v1.4.0
  [42e2da0e] Grisu v1.0.2
  [d853e229] GroupSlices v0.0.3
  [cd3eb016] HTTP v1.10.19
  [3e5b6fbb] HostCPUFeatures v0.1.18
  [34004b35] HypergeometricFunctions v0.3.28
  [09f84164] HypothesisTests v0.11.6
  [615f187c] IfElse v0.1.1
  [842dd82b] InlineStrings v1.4.5
  [a98d9a8b] Interpolations v0.16.2
  [3587e190] InverseFunctions v0.1.17
  [41ab1584] InvertedIndices v1.3.1
  [92d709cd] IrrationalConstants v0.2.6
  [82899510] IteratorInterfaceExtensions v1.0.0
⌅ [033835bb] JLD2 v0.4.55
  [1019f520] JLFzf v0.1.11
  [692b3bcd] JLLWrappers v1.7.1
  [9da8a3cd] JLSO v2.7.0
  [682c06a0] JSON v1.3.0
  [5ab0869b] KernelDensity v0.6.10
  [b964fa9f] LaTeXStrings v1.4.0
  [23fbe1c1] Latexify v0.16.10
  [10f19ff3] LayoutPointers v0.1.17
⌅ [5078a376] LazyArrays v1.10.0
  [2ab3a3ac] LogExpFunctions v0.3.29
  [e6f89c97] LoggingExtras v1.2.0
  [bdcacae8] LoopVectorization v0.12.173
  [1914dd2f] MacroTools v0.5.16
  [d125e4d3] ManualMemory v0.1.8
⌅ [a3b82374] MatrixFactorizations v2.2.0
  [739be429] MbedTLS v1.1.9
  [442fdcdd] Measures v0.3.3
  [f28f55f0] Memento v1.4.1
  [e47305d1] MendelImpute v1.2.6
  [e1d29d7a] Missings v1.2.0
  [6f286f6a] MultivariateStats v0.10.3
  [77ba4419] NaNMath v1.1.3
  [b8a86587] NearestNeighbors v0.4.26
  [510215fc] Observables v0.5.5
  [6fe1bfb0] OffsetArrays v1.17.0
  [4d8831e6] OpenSSL v1.6.1
  [bac558e1] OrderedCollections v1.8.1
  [90014a1f] PDMats v0.11.37
  [69de0a69] Parsers v2.8.3
  [ccf2f8ad] PlotThemes v3.3.0
  [995b91a9] PlotUtils v1.4.4
  [91a5bcdd] Plots v1.41.3
  [1d0040c9] PolyesterWeave v0.2.2
  [2dfb63ee] PooledArrays v1.4.3
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.1
  [08abe8d2] PrettyTables v3.1.2
  [92933f4c] ProgressMeter v1.11.0
  [43287f4e] PtrArrays v1.3.0
  [1fd47b50] QuadGK v2.11.2
  [c84ed2f1] Ratios v0.4.5
  [3cdcf5f2] RecipesBase v1.3.4
  [01d81517] RecipesPipeline v0.6.12
  [189a3867] Reexport v1.2.2
  [05181044] RelocatableFolders v1.0.1
  [ae029012] Requires v1.3.1
  [79098fc4] Rmath v0.9.0
  [f2b01f46] Roots v2.2.10
  [fdea26ae] SIMD v3.7.2
  [94e857df] SIMDTypes v0.1.0
  [476501e8] SLEEFPirates v0.6.43
  [0aa819cd] SQLite v1.6.1
  [431bcebd] SciMLPublic v1.0.1
  [6c6a2e73] Scratch v1.3.0
  [91c51154] SentinelArrays v1.4.9
  [992d4aef] Showoff v1.0.3
  [777ac1f9] SimpleBufferStream v1.2.0
  [4e780e97] SnpArrays v0.3.22
  [a2af1166] SortingAlgorithms v1.2.2
  [276daf66] SpecialFunctions v2.6.1
  [860ef19b] StableRNGs v1.0.4
  [aedffcd0] Static v1.3.1
  [0d7ed370] StaticArrayInterface v1.8.0
  [90137ffa] StaticArrays v1.9.16
  [1e83bf80] StaticArraysCore v1.4.4
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.8.0
  [2913bbd2] StatsBase v0.34.9
  [4c63d2b9] StatsFuns v1.5.2
  [f3b207a7] StatsPlots v0.15.8
  [892a3eda] StringManipulation v0.4.2
  [ec057cc2] StructUtils v2.6.0
  [ab02a1b2] TableOperations v1.2.0
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
  [62fd8b95] TensorCore v0.1.1
  [8290d209] ThreadingUtilities v0.5.5
⌅ [3bb67fe8] TranscodingStreams v0.9.13
  [5c2747f8] URIs v1.6.1
  [3a884ed6] UnPack v1.0.2
  [1cfade01] UnicodeFun v0.4.1
  [41fe7b60] Unzip v0.2.0
  [a620830f] VCFTools v0.2.10
  [28eba6e3] VariantCallFormat v0.5.9
  [3d5dd08c] VectorizationBase v0.21.72
  [ea10d353] WeakRefStrings v1.4.2
  [cc8bc4a8] Widgets v0.6.7
  [efce3f68] WoodburyMatrices v1.0.0
  [76eceee3] WorkerUtilities v1.6.1
⌅ [68821587] Arpack_jll v3.5.2+0
  [6e34b625] Bzip2_jll v1.0.9+0
  [83423d85] Cairo_jll v1.18.5+0
  [ee1fde0b] Dbus_jll v1.16.2+0
  [2702e6a9] EpollShim_jll v0.0.20230411+1
  [2e619515] Expat_jll v2.7.3+0
  [b22a6f82] FFMPEG_jll v8.0.1+0
  [f5851436] FFTW_jll v3.3.11+0
  [a3f928ae] Fontconfig_jll v2.17.1+0
  [d7e528f0] FreeType2_jll v2.13.4+0
  [559328eb] FriBidi_jll v1.0.17+0
  [0656b61e] GLFW_jll v3.4.1+0
  [d2c73de3] GR_jll v0.73.19+1
  [b0724c58] GettextRuntime_jll v0.22.4+0
  [61579ee1] Ghostscript_jll v9.55.1+0
  [7746bdde] Glib_jll v2.86.2+0
  [3b182d85] Graphite2_jll v1.3.15+0
  [2e76f6c2] HarfBuzz_jll v8.5.1+0
  [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0
  [aacddb02] JpegTurbo_jll v3.1.4+0
  [c1c5ebd0] LAME_jll v3.100.3+0
  [88015f11] LERC_jll v4.0.1+0
  [1d63c593] LLVMOpenMP_jll v18.1.8+0
  [dd4b983a] LZO_jll v2.10.3+0
⌅ [e9f186c6] Libffi_jll v3.4.7+0
  [7e76a0d4] Libglvnd_jll v1.7.1+1
  [94ce4f54] Libiconv_jll v1.18.0+0
  [4b2f31a3] Libmount_jll v2.41.2+0
  [89763e89] Libtiff_jll v4.7.2+0
  [38a345b3] Libuuid_jll v2.41.2+0
  [856f044c] MKL_jll v2025.2.0+0
  [c8ffd9c3] MbedTLS_jll v2.28.1010+0
  [e7412a2a] Ogg_jll v1.3.6+0
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [91d4177d] Opus_jll v1.5.2+0
  [36c8627f] Pango_jll v1.57.0+0
⌅ [30392449] Pixman_jll v0.44.2+0
  [c0090381] Qt6Base_jll v6.8.2+2
  [629bc702] Qt6Declarative_jll v6.8.2+1
  [ce943373] Qt6ShaderTools_jll v6.8.2+1
  [e99dba38] Qt6Wayland_jll v6.8.2+2
  [f50d1b31] Rmath_jll v0.5.1+0
  [76ed43ae] SQLite_jll v3.48.0+0
  [a44049a8] Vulkan_Loader_jll v1.3.243+0
  [a2964d1f] Wayland_jll v1.24.0+0
  [ffd25f8a] XZ_jll v5.8.2+0
  [f67eecfb] Xorg_libICE_jll v1.1.2+0
  [c834827a] Xorg_libSM_jll v1.2.6+0
  [4f6342f7] Xorg_libX11_jll v1.8.12+0
  [0c0b7dd1] Xorg_libXau_jll v1.0.13+0
  [935fb764] Xorg_libXcursor_jll v1.2.4+0
  [a3789734] Xorg_libXdmcp_jll v1.1.6+0
  [1082639a] Xorg_libXext_jll v1.3.7+0
  [d091e8ba] Xorg_libXfixes_jll v6.0.2+0
  [a51aa0fd] Xorg_libXi_jll v1.8.3+0
  [d1454406] Xorg_libXinerama_jll v1.1.6+0
  [ec84b674] Xorg_libXrandr_jll v1.5.5+0
  [ea2f1a96] Xorg_libXrender_jll v0.9.12+0
  [c7cfdc94] Xorg_libxcb_jll v1.17.1+0
  [cc61e674] Xorg_libxkbfile_jll v1.1.3+0
  [e920d4aa] Xorg_xcb_util_cursor_jll v0.1.6+0
  [12413925] Xorg_xcb_util_image_jll v0.4.1+0
  [2def613f] Xorg_xcb_util_jll v0.4.1+0
  [975044d2] Xorg_xcb_util_keysyms_jll v0.4.1+0
  [0d47668e] Xorg_xcb_util_renderutil_jll v0.3.10+0
  [c22f9ab0] Xorg_xcb_util_wm_jll v0.4.2+0
  [35661453] Xorg_xkbcomp_jll v1.4.7+0
  [33bec58e] Xorg_xkeyboard_config_jll v2.44.0+0
  [c5fb5394] Xorg_xtrans_jll v1.6.0+0
  [35ca27e7] eudev_jll v3.2.14+0
  [214eeab7] fzf_jll v0.61.1+0
  [a4ae2306] libaom_jll v3.13.1+0
  [0ac62f75] libass_jll v0.17.4+0
  [1183f4f0] libdecor_jll v0.2.2+0
  [2db6ffa8] libevdev_jll v1.13.4+0
  [f638f0a6] libfdk_aac_jll v2.0.4+0
  [36db933b] libinput_jll v1.28.1+0
  [b53b4c65] libpng_jll v1.6.53+0
  [f27f6e37] libvorbis_jll v1.3.8+0
  [009596ad] mtdev_jll v1.1.7+0
  [1317d2d5] oneTBB_jll v2022.0.0+1
⌅ [1270edf5] x264_jll v10164.0.1+0
  [dfaa095f] x265_jll v4.1.0+0
  [d8fb68d0] xkbcommon_jll v1.13.0+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v1.0.0
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.14.0
  [de0858da] Printf v1.11.0
  [9abbd945] Profile v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [1a1011a3] SharedArrays v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.13.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.17.0+0
  [e37daf67] LibGit2_jll v1.9.2+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.12.2
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.7+0
  [458c3c95] OpenSSL_jll v3.5.4+0
  [efcefdf7] PCRE2_jll v10.47.0+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [83775a58] Zlib_jll v1.3.1+2
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850b90] libblastrampoline_jll v5.15.0+0
  [8e850ede] nghttp2_jll v1.68.0+1
  [3f19e933] p7zip_jll v17.7.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
 Downloading artifact: IntelOpenMP
 Downloading artifact: oneTBB
[ Info: Compiling VCF parser...
WARNING: Constructor for type "MemoryLayout" was extended in `LazyArrays` without explicit qualification or import.
  NOTE: Assumed "MemoryLayout" refers to `ArrayLayouts.MemoryLayout`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function MemoryLayout end`.
  Hint: To silence the warning, qualify `MemoryLayout` as `ArrayLayouts.MemoryLayout` in the method signature or explicitly `import ArrayLayouts: MemoryLayout`.
ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword.
Stacktrace:
 [1] top-level scope
   @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
   @ Base ./loading.jl:3309
 [4] top-level scope
   @ stdin:5
 [5] eval(m::Module, e::Any)
   @ Core ./boot.jl:489
 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
   @ Base ./loading.jl:3151
 [7] include_string
   @ ./loading.jl:3161 [inlined]
 [8] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:342
 [9] _start()
   @ Base ./client.jl:585
in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3
in expression starting at stdin:5
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("4e780e97-f5bf-4111-9dc4-b70aaf691b06"), "SnpArrays") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2873
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2725
  [4] macro expansion
    @ ./loading.jl:2653 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2617
  [7] require
    @ ./loading.jl:2593 [inlined]
  [8] eval_import_path
    @ ./module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [10] _eval_using
    @ ./module.jl:137 [inlined]
 [11] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [12] top-level scope
    @ ~/.julia/packages/MendelImpute/z2M6N/src/MendelImpute.jl:5
 [13] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3309
 [15] top-level scope
    @ stdin:5
 [16] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3151
 [18] include_string
    @ ./loading.jl:3161 [inlined]
 [19] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [20] _start()
    @ Base ./client.jl:585
in expression starting at /home/pkgeval/.julia/packages/MendelImpute/z2M6N/src/MendelImpute.jl:1
in expression starting at stdin:5

  5 dependencies had output during precompilation:
┌ VariantCallFormat
│  [ Info: Compiling VCF parser...
└  
┌ LazyArrays
│  WARNING: Constructor for type "MemoryLayout" was extended in `LazyArrays` without explicit qualification or import.
│    NOTE: Assumed "MemoryLayout" refers to `ArrayLayouts.MemoryLayout`. This behavior is deprecated and may differ in future versions.
│    NOTE: This behavior may have differed in Julia versions prior to 1.12.
│    Hint: If you intended to create a new generic function of the same name, use `function MemoryLayout end`.
│    Hint: To silence the warning, qualify `MemoryLayout` as `ArrayLayouts.MemoryLayout` in the method signature or explicitly `import ArrayLayouts: MemoryLayout`.
└  
┌ SnpArrays
│  ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword.
│  Stacktrace:
│   [1] top-level scope
│     @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48
│   [2] include(mod::Module, _path::String)
│     @ Base ./Base.jl:309
│   [3] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
│     @ Base ./loading.jl:3309
│   [4] top-level scope
│     @ stdin:5
│   [5] eval(m::Module, e::Any)
│     @ Core ./boot.jl:489
│   [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
│     @ Base ./loading.jl:3151
│   [7] include_string
│     @ ./loading.jl:3161 [inlined]
│   [8] exec_options(opts::Base.JLOptions)
│     @ Base ./client.jl:342
│   [9] _start()
│     @ Base ./client.jl:585
│  in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3
│  in expression starting at stdin:5
└  
┌ MendelImpute
│  [Output was shown above]
└  
┌ MKL_jll
│  Downloading artifact: IntelOpenMP
│   Downloading artifact: oneTBB
└  
ERROR: LoadError: The following 2 packages failed to precompile:

SnpArrays 
Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.14/SnpArrays/jl_OGuE8O" (ProcessExited(1)).

MendelImpute 
Failed to precompile MendelImpute [e47305d1-6a61-5370-bc5d-77554d143183] to "/home/pkgeval/.julia/compiled/v1.14/MendelImpute/jl_3E5QMg" (ProcessExited(1)).

in expression starting at /home/pkgeval/.julia/packages/MendelImpute/z2M6N/test/runtests.jl:1

Testing failed after 731.58s

ERROR: LoadError: Package MendelImpute errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3067
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2916 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:237
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [14] _start()
    @ Base ./client.jl:585
in expression starting at /PkgEval.jl/scripts/evaluate.jl:228

PkgEval failed after 1077.23s: package fails to precompile