Package evaluation to test AtomsBuilder on Julia 1.14.0-DEV.1455 (9d9110fde9*) started at 2026-01-01T17:09:07.249 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 11.0s ################################################################################ # Installation # Installing AtomsBuilder... Resolving package versions... Installed CodecZlib ─────────── v0.7.8 Installed ExceptionUnwrapping ─ v0.1.11 Installed URIs ──────────────── v1.6.1 Installed ConcurrentUtilities ─ v2.5.0 Installed LightXML ──────────── v0.9.3 Installed TranscodingStreams ── v0.11.3 Installed AtomsBase ─────────── v0.5.2 Installed PeriodicTable ─────── v1.2.1 Installed LoggingExtras ─────── v1.2.0 Installed MbedTLS ───────────── v1.1.9 Installed OpenSSL ───────────── v1.6.1 Installed StaticArrays ──────── v1.9.16 Installed StaticArraysCore ──── v1.4.4 Installed PrecompileTools ───── v1.3.3 Installed AtomsBuilder ──────── v0.2.3 Installed UnitfulAtomic ─────── v1.0.0 Installed StructUtils ───────── v2.6.0 Installed Requires ──────────── v1.3.1 Installed BitFlags ──────────── v0.1.9 Installed Parsers ───────────── v2.8.3 Installed HTTP ──────────────── v1.10.19 Installed JSON ──────────────── v1.3.0 Installed Chemfiles ─────────── v0.10.43 Installed PubChemCrawler ────── v1.4.0 Installed XML2_jll ──────────── v2.15.1+0 Installed Reexport ──────────── v1.2.2 Installed SimpleBufferStream ── v1.2.0 Installed Unitful ───────────── v1.27.0 Installed libcleri_jll ──────── v0.12.1+3 Installed Libiconv_jll ──────── v1.18.0+0 Installed JLLWrappers ───────── v1.7.1 Installed Preferences ───────── v1.5.1 Installed MbedTLS_jll ───────── v2.28.1010+0 Installed Chemfiles_jll ─────── v0.10.4+0 Installed DocStringExtensions ─ v0.9.5 Installed ExtXYZ ────────────── v0.2.2 Installed extxyz_jll ────────── v0.1.3+0 Installed AtomsIO ───────────── v0.3.0 Installing 6 artifacts Installed artifact extxyz 23.2 KiB Installed artifact libcleri 19.1 KiB Installed artifact Chemfiles 1.6 MiB Installed artifact Libiconv 1.9 MiB Installed artifact XML2 2.2 MiB Installed artifact MbedTLS 2.2 MiB Updating `~/.julia/environments/v1.14/Project.toml` [f5cc8831] + AtomsBuilder v0.2.3 Updating `~/.julia/environments/v1.14/Manifest.toml` [a963bdd2] + AtomsBase v0.5.2 [f5cc8831] + AtomsBuilder v0.2.3 [1692102d] + AtomsIO v0.3.0 [d1d4a3ce] + BitFlags v0.1.9 [46823bd8] + Chemfiles v0.10.43 [944b1d66] + CodecZlib v0.7.8 [f0e56b4a] + ConcurrentUtilities v2.5.0 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [352459e4] + ExtXYZ v0.2.2 [cd3eb016] + HTTP v1.10.19 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.3.0 [9c8b4983] + LightXML v0.9.3 [e6f89c97] + LoggingExtras v1.2.0 [739be429] + MbedTLS v1.1.9 [4d8831e6] + OpenSSL v1.6.1 [69de0a69] + Parsers v2.8.3 [7b2266bf] + PeriodicTable v1.2.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [30e472fa] + PubChemCrawler v1.4.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [777ac1f9] + SimpleBufferStream v1.2.0 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [ec057cc2] + StructUtils v2.6.0 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [1986cc42] + Unitful v1.27.0 [a7773ee8] + UnitfulAtomic v1.0.0 [78a364fa] + Chemfiles_jll v0.10.4+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [02c8fc9c] + XML2_jll v2.15.1+0 [6ecdc6fc] + extxyz_jll v0.1.3+0 [cdc7adba] + libcleri_jll v0.12.1+3 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Installation completed after 9.12s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 Precompilation failed after 15.18s ################################################################################ # Testing # Testing AtomsBuilder Status `/tmp/jl_pnP3St/Project.toml` [a963bdd2] AtomsBase v0.5.2 [f5cc8831] AtomsBuilder v0.2.3 [1692102d] AtomsIO v0.3.0 [682c06a0] JSON v1.3.0 [30e472fa] PubChemCrawler v1.4.0 [90137ffa] StaticArrays v1.9.16 [1986cc42] Unitful v1.27.0 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_pnP3St/Manifest.toml` [a963bdd2] AtomsBase v0.5.2 [f5cc8831] AtomsBuilder v0.2.3 [1692102d] AtomsIO v0.3.0 [d1d4a3ce] BitFlags v0.1.9 [46823bd8] Chemfiles v0.10.43 [944b1d66] CodecZlib v0.7.8 [f0e56b4a] ConcurrentUtilities v2.5.0 [ffbed154] DocStringExtensions v0.9.5 [460bff9d] ExceptionUnwrapping v0.1.11 [352459e4] ExtXYZ v0.2.2 [cd3eb016] HTTP v1.10.19 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.3.0 [9c8b4983] LightXML v0.9.3 [e6f89c97] LoggingExtras v1.2.0 [739be429] MbedTLS v1.1.9 [4d8831e6] OpenSSL v1.6.1 [69de0a69] Parsers v2.8.3 [7b2266bf] PeriodicTable v1.2.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [30e472fa] PubChemCrawler v1.4.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [777ac1f9] SimpleBufferStream v1.2.0 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [ec057cc2] StructUtils v2.6.0 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [1986cc42] Unitful v1.27.0 [a7773ee8] UnitfulAtomic v1.0.0 [78a364fa] Chemfiles_jll v0.10.4+0 [94ce4f54] Libiconv_jll v1.18.0+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [02c8fc9c] XML2_jll v2.15.1+0 [6ecdc6fc] extxyz_jll v0.1.3+0 [cdc7adba] libcleri_jll v0.12.1+3 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Testing Running tests... Test Summary: | Pass Total Time AtomsBuilder.jl | 53 53 1m05.4s Testing AtomsBuilder tests passed Testing completed after 273.64s PkgEval succeeded after 321.61s