Package evaluation to test StructuralCausalModels on Julia 1.14.0-DEV.1441 (812f3beb0a*) started at 2025-12-30T18:05:42.983 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 9.3s ################################################################################ # Installation # Installing StructuralCausalModels... Resolving package versions... Installed Rmath_jll ─────────────────── v0.5.1+0 Installed InlineStrings ─────────────── v1.4.5 Installed FilePathsBase ─────────────── v0.9.24 Installed HypergeometricFunctions ───── v0.3.28 Installed DelimitedFiles ────────────── v1.9.1 Installed FillArrays ────────────────── v1.15.0 Installed DataStructures ────────────── v0.18.22 Installed CodecZlib ─────────────────── v0.7.8 Installed AliasTables ───────────────── v1.1.3 Installed OrderedCollections ────────── v1.8.1 Installed TranscodingStreams ────────── v0.11.3 Installed StatsBase ─────────────────── v0.34.9 Installed Compat ────────────────────── v4.18.1 Installed StructuralCausalModels ────── v1.4.2 Installed DataAPI ───────────────────── v1.16.0 Installed Combinatorics ─────────────── v1.1.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed InvertedIndices ───────────── v1.3.1 Installed Statistics ────────────────── v1.11.1 Installed DataValueInterfaces ───────── v1.0.0 Installed StatsAPI ──────────────────── v1.8.0 Installed SentinelArrays ────────────── v1.4.9 Installed IrrationalConstants ───────── v0.2.6 Installed PrecompileTools ───────────── v1.3.3 Installed QuadGK ────────────────────── v2.11.2 Installed StringManipulation ────────── v0.4.2 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Requires ──────────────────── v1.3.1 Installed LogExpFunctions ───────────── v0.3.29 Installed Rmath ─────────────────────── v0.9.0 Installed Parsers ───────────────────── v2.8.3 Installed StatsFuns ─────────────────── v1.5.2 Installed Tables ────────────────────── v1.12.1 Installed PtrArrays ─────────────────── v1.3.0 Installed PrettyTables ──────────────── v3.1.2 Installed Reexport ──────────────────── v1.2.2 Installed Distributions ─────────────── v0.25.122 Installed SpecialFunctions ──────────── v2.6.1 Installed Missings ──────────────────── v1.2.0 Installed Preferences ───────────────── v1.5.1 Installed WeakRefStrings ────────────── v1.4.2 Installed DataFrames ────────────────── v1.8.1 Installed PooledArrays ──────────────── v1.4.3 Installed JLLWrappers ───────────────── v1.7.1 Installed TableTraits ───────────────── v1.0.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed PDMats ────────────────────── v0.11.37 Installed Crayons ───────────────────── v4.1.1 Installed SortingAlgorithms ─────────── v1.2.2 Installed WorkerUtilities ───────────── v1.6.1 Installed NamedArrays ───────────────── v0.10.5 Installed DocStringExtensions ───────── v0.9.5 Installed CSV ───────────────────────── v0.10.15 Installing 2 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Rmath 121.9 KiB Updating `~/.julia/environments/v1.14/Project.toml` [a41e6734] + StructuralCausalModels v1.4.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [861a8166] + Combinatorics v1.1.0 [34da2185] + Compat v4.18.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.15.0 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [86f7a689] + NamedArrays v0.10.5 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [91c51154] + SentinelArrays v1.4.9 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.9 [4c63d2b9] + StatsFuns v1.5.2 [892a3eda] + StringManipulation v0.4.2 [a41e6734] + StructuralCausalModels v1.4.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 8.01s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 Precompilation failed after 11.07s ################################################################################ # Testing # Testing StructuralCausalModels Status `/tmp/jl_dZcMBG/Project.toml` [336ed68f] CSV v0.10.15 [861a8166] Combinatorics v1.1.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [86f7a689] NamedArrays v0.10.5 [189a3867] Reexport v1.2.2 [10745b16] Statistics v1.11.1 [a41e6734] StructuralCausalModels v1.4.2 [37e2e46d] LinearAlgebra v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_dZcMBG/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [861a8166] Combinatorics v1.1.0 [34da2185] Compat v4.18.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [86f7a689] NamedArrays v0.10.5 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [91c51154] SentinelArrays v1.4.9 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.9 [4c63d2b9] StatsFuns v1.5.2 [892a3eda] StringManipulation v0.4.2 [a41e6734] StructuralCausalModels v1.4.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time dag_formulations | 49 49 1.4s Test Summary: | Pass Total Time set_dag_df | 6 6 1.3s Test Summary: | Pass Total Time dagitty conversions | 8 8 1.0s Test Summary: | Pass Total Time ggm conversions | 7 7 2.0s Test Summary: | Pass Total Time GraphViz conversion | 1 1 0.0s basis_set_01: Test Failed at /home/pkgeval/.julia/packages/StructuralCausalModels/n2K8B/test/test_basis_set_01.jl:22 Expression: length(bs) == 48 Evaluated: 50 == 48 Stacktrace: [1] top-level scope @ ~/.julia/packages/StructuralCausalModels/n2K8B/test/test_basis_set_01.jl:22 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/StructuralCausalModels/n2K8B/test/test_basis_set_01.jl:22 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] basis_set_01: Test Failed at /home/pkgeval/.julia/packages/StructuralCausalModels/n2K8B/test/test_basis_set_01.jl:26 Expression: bs[44] == [:y, :k1, :w, :k2] Evaluated: [:y, :v, :x2, :x3, :k2] == [:y, :k1, :w, :k2] Stacktrace: [1] top-level scope @ ~/.julia/packages/StructuralCausalModels/n2K8B/test/test_basis_set_01.jl:22 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/StructuralCausalModels/n2K8B/test/test_basis_set_01.jl:26 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] basis_set_01: Test Failed at /home/pkgeval/.julia/packages/StructuralCausalModels/n2K8B/test/test_basis_set_01.jl:27 Expression: bs[45] == [:y, :k1, :w, :x2, :k2] Evaluated: [:y, :v, :x1, :x2, :x3, :k2] == [:y, :k1, :w, :x2, :k2] Stacktrace: [1] top-level scope @ ~/.julia/packages/StructuralCausalModels/n2K8B/test/test_basis_set_01.jl:22 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/StructuralCausalModels/n2K8B/test/test_basis_set_01.jl:27 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] basis_set_01: Test Failed at /home/pkgeval/.julia/packages/StructuralCausalModels/n2K8B/test/test_basis_set_01.jl:28 Expression: bs[46] == [:y, :k1, :w, :x3, :k2] Evaluated: [:y, :k1, :w, :k2] == [:y, :k1, :w, :x3, :k2] Stacktrace: [1] top-level scope @ ~/.julia/packages/StructuralCausalModels/n2K8B/test/test_basis_set_01.jl:22 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/StructuralCausalModels/n2K8B/test/test_basis_set_01.jl:28 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] basis_set_01: Test Failed at /home/pkgeval/.julia/packages/StructuralCausalModels/n2K8B/test/test_basis_set_01.jl:29 Expression: bs[47] == [:y, :k1, :x2, :x3, :k2] Evaluated: [:y, :k1, :w, :x2, :k2] == [:y, :k1, :x2, :x3, :k2] Stacktrace: [1] top-level scope @ ~/.julia/packages/StructuralCausalModels/n2K8B/test/test_basis_set_01.jl:22 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/StructuralCausalModels/n2K8B/test/test_basis_set_01.jl:29 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] basis_set_01: Test Failed at /home/pkgeval/.julia/packages/StructuralCausalModels/n2K8B/test/test_basis_set_01.jl:30 Expression: bs[48] == [:y, :k1, :w, :x2, :x3, :k2] Evaluated: [:y, :k1, :w, :x3, :k2] == [:y, :k1, :w, :x2, :x3, :k2] Stacktrace: [1] top-level scope @ ~/.julia/packages/StructuralCausalModels/n2K8B/test/test_basis_set_01.jl:22 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/StructuralCausalModels/n2K8B/test/test_basis_set_01.jl:30 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] Test Summary: | Pass Fail Total Time basis_set_01 | 3 6 9 4.7s RNG of the outermost testset: Random.Xoshiro(0xb94cc4956f300e32, 0xfb610eab3cfe0d9a, 0x80bde9cf99e1138f, 0x56e19530152fe764, 0x8f5095f5bbdeec87) ERROR: LoadError: Some tests did not pass: 3 passed, 6 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/StructuralCausalModels/n2K8B/test/test_basis_set_01.jl:20 in expression starting at /home/pkgeval/.julia/packages/StructuralCausalModels/n2K8B/test/runtests.jl:12 Testing failed after 379.57s ERROR: LoadError: Package StructuralCausalModels errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3067 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2916 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval failed after 427.09s: package has test failures