Package evaluation to test PlmDCA on Julia 1.14.0-DEV.1441 (812f3beb0a*) started at 2025-12-30T18:20:50.102


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 9.16s


################################################################################
# Installation
#

Installing PlmDCA...
   Resolving package versions...
   Installed CommonWorldInvalidations ───────── v1.0.0
   Installed Adapt ──────────────────────────── v4.4.0
   Installed ManualMemory ───────────────────── v0.1.8
   Installed SIMDTypes ──────────────────────── v0.1.0
   Installed SLEEFPirates ───────────────────── v0.6.43
   Installed BitTwiddlingConvenienceFunctions ─ v0.1.6
   Installed VectorizationBase ──────────────── v0.21.72
   Installed DCAUtils ───────────────────────── v1.1.0
   Installed CpuId ──────────────────────────── v0.3.1
   Installed Compat ─────────────────────────── v4.18.1
   Installed CEnum ──────────────────────────── v0.5.0
   Installed HostCPUFeatures ────────────────── v0.1.18
   Installed Statistics ─────────────────────── v1.11.1
   Installed ArrayInterface ─────────────────── v7.22.0
   Installed PrecompileTools ────────────────── v1.3.3
   Installed LoopVectorization ──────────────── v0.12.173
   Installed CPUSummary ─────────────────────── v0.2.7
   Installed StaticArrayInterface ───────────── v1.8.0
   Installed OffsetArrays ───────────────────── v1.17.0
   Installed SciMLPublic ────────────────────── v1.0.1
   Installed Requires ───────────────────────── v1.3.1
   Installed IfElse ─────────────────────────── v0.1.1
   Installed LayoutPointers ─────────────────── v0.1.17
   Installed CloseOpenIntervals ─────────────── v0.1.13
   Installed JLLWrappers ────────────────────── v1.7.1
   Installed Static ─────────────────────────── v1.3.1
   Installed PlmDCA ─────────────────────────── v1.0.4
   Installed Preferences ────────────────────── v1.5.1
   Installed FastaIO ────────────────────────── v1.1.0
   Installed NLopt ──────────────────────────── v1.2.1
   Installed GZip ───────────────────────────── v0.6.2
   Installed ThreadingUtilities ─────────────── v0.5.5
   Installed PolyesterWeave ─────────────────── v0.2.2
   Installed NLopt_jll ──────────────────────── v2.10.0+0
   Installed UnPack ─────────────────────────── v1.0.2
   Installed DocStringExtensions ────────────── v0.9.5
  Installing 1 artifacts
   Installed artifact NLopt 322.7 KiB
    Updating `~/.julia/environments/v1.14/Project.toml`
  [06784e46] + PlmDCA v1.0.4
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [79e6a3ab] + Adapt v4.4.0
  [4fba245c] + ArrayInterface v7.22.0
  [62783981] + BitTwiddlingConvenienceFunctions v0.1.6
  [fa961155] + CEnum v0.5.0
  [2a0fbf3d] + CPUSummary v0.2.7
  [fb6a15b2] + CloseOpenIntervals v0.1.13
  [f70d9fcc] + CommonWorldInvalidations v1.0.0
  [34da2185] + Compat v4.18.1
  [adafc99b] + CpuId v0.3.1
  [e41cd558] + DCAUtils v1.1.0
  [ffbed154] + DocStringExtensions v0.9.5
  [a0c94c4b] + FastaIO v1.1.0
  [92fee26a] + GZip v0.6.2
  [3e5b6fbb] + HostCPUFeatures v0.1.18
  [615f187c] + IfElse v0.1.1
  [692b3bcd] + JLLWrappers v1.7.1
  [10f19ff3] + LayoutPointers v0.1.17
  [bdcacae8] + LoopVectorization v0.12.173
  [d125e4d3] + ManualMemory v0.1.8
  [76087f3c] + NLopt v1.2.1
  [6fe1bfb0] + OffsetArrays v1.17.0
  [06784e46] + PlmDCA v1.0.4
  [1d0040c9] + PolyesterWeave v0.2.2
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.1
  [ae029012] + Requires v1.3.1
  [94e857df] + SIMDTypes v0.1.0
  [476501e8] + SLEEFPirates v0.6.43
  [431bcebd] + SciMLPublic v1.0.1
  [aedffcd0] + Static v1.3.1
  [0d7ed370] + StaticArrayInterface v1.8.0
  [10745b16] + Statistics v1.11.1
  [8290d209] + ThreadingUtilities v0.5.5
  [3a884ed6] + UnPack v1.0.2
  [3d5dd08c] + VectorizationBase v0.21.72
  [079eb43e] + NLopt_jll v2.10.0+0
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [d6f4376e] + Markdown v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [f489334b] + StyledStrings v1.13.0
  [fa267f1f] + TOML v1.0.3
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850b90] + libblastrampoline_jll v5.15.0+0

Installation completed after 7.25s


################################################################################
# Precompilation
#

ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:10
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:585
in expression starting at /PkgEval.jl/scripts/precompile.jl:6

caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:7
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:585

Precompilation failed after 13.19s



################################################################################
# Testing
#

     Testing PlmDCA
      Status `/tmp/jl_29SZXf/Project.toml`
  [e41cd558] DCAUtils v1.1.0
  [bdcacae8] LoopVectorization v0.12.173
  [76087f3c] NLopt v1.2.1
  [06784e46] PlmDCA v1.0.4
  [3bb3bcb6] PottsGauge v0.1.0
  [aea7be01] PrecompileTools v1.3.3
  [10745b16] Statistics v1.11.1
  [37e2e46d] LinearAlgebra v1.13.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_29SZXf/Manifest.toml`
  [79e6a3ab] Adapt v4.4.0
  [4fba245c] ArrayInterface v7.22.0
  [62783981] BitTwiddlingConvenienceFunctions v0.1.6
  [fa961155] CEnum v0.5.0
  [2a0fbf3d] CPUSummary v0.2.7
  [fb6a15b2] CloseOpenIntervals v0.1.13
  [f70d9fcc] CommonWorldInvalidations v1.0.0
  [34da2185] Compat v4.18.1
  [adafc99b] CpuId v0.3.1
  [e41cd558] DCAUtils v1.1.0
  [ffbed154] DocStringExtensions v0.9.5
  [a0c94c4b] FastaIO v1.1.0
  [92fee26a] GZip v0.6.2
  [3e5b6fbb] HostCPUFeatures v0.1.18
  [615f187c] IfElse v0.1.1
  [692b3bcd] JLLWrappers v1.7.1
  [10f19ff3] LayoutPointers v0.1.17
  [bdcacae8] LoopVectorization v0.12.173
  [d125e4d3] ManualMemory v0.1.8
  [76087f3c] NLopt v1.2.1
  [6fe1bfb0] OffsetArrays v1.17.0
  [06784e46] PlmDCA v1.0.4
  [1d0040c9] PolyesterWeave v0.2.2
  [3bb3bcb6] PottsGauge v0.1.0
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.1
  [ae029012] Requires v1.3.1
  [94e857df] SIMDTypes v0.1.0
  [476501e8] SLEEFPirates v0.6.43
  [431bcebd] SciMLPublic v1.0.1
  [aedffcd0] Static v1.3.1
  [0d7ed370] StaticArrayInterface v1.8.0
  [10745b16] Statistics v1.11.1
  [8290d209] ThreadingUtilities v0.5.5
  [3a884ed6] UnPack v1.0.2
  [3d5dd08c] VectorizationBase v0.21.72
  [079eb43e] NLopt_jll v2.10.0+0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [f489334b] StyledStrings v1.13.0
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] OpenBLAS_jll v0.3.29+0
  [83775a58] Zlib_jll v1.3.1+2
  [8e850b90] libblastrampoline_jll v5.15.0+0
     Testing Running tests...
ERROR: LoadError: ArgumentError: incompatible length of Pi_true with q
Stacktrace:
  [1] add_pseudocount(Pi_true::Vector{Float64}, Pij_true::Matrix{Float64}, pc::Float64, q::Int64)
    @ DCAUtils ~/.julia/packages/DCAUtils/kq0WV/src/DCAUtils.jl:96
  [2] add_pseudocount
    @ ~/.julia/packages/DCAUtils/kq0WV/src/DCAUtils.jl:94 [inlined]
  [3] mutualinfo(Z::Matrix{Int8}; remove_dups::Bool, min_separation::Int64, pseudocount::Float64, theta::Symbol, output::Symbol)
    @ PlmDCA ~/.julia/packages/PlmDCA/Zmwgc/src/mi.jl:14
  [4] mutualinfo
    @ ~/.julia/packages/PlmDCA/Zmwgc/src/mi.jl:1 [inlined]
  [5] (::PlmDCA.var"#27#28"{Vector{Float64}, Matrix{Int64}})()
    @ PlmDCA ~/.julia/packages/PlmDCA/Zmwgc/src/precompile.jl:13
  [6] (::Base.RedirectStdStream)(thunk::PlmDCA.var"#27#28"{Vector{Float64}, Matrix{Int64}}, stream::Base.DevNull)
    @ Base ./stream.jl:1465
  [7] macro expansion
    @ ~/.julia/packages/PlmDCA/Zmwgc/src/precompile.jl:10 [inlined]
  [8] macro expansion
    @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined]
  [9] macro expansion
    @ ~/.julia/packages/PlmDCA/Zmwgc/src/precompile.jl:9 [inlined]
 [10] macro expansion
    @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:121 [inlined]
 [11] top-level scope
    @ ~/.julia/packages/PlmDCA/Zmwgc/src/precompile.jl:118
 [12] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [13] top-level scope
    @ ~/.julia/packages/PlmDCA/Zmwgc/src/PlmDCA.jl:16
 [14] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [15] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3309
 [16] top-level scope
    @ stdin:5
 [17] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [18] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3151
 [19] include_string
    @ ./loading.jl:3161 [inlined]
 [20] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [21] _start()
    @ Base ./client.jl:585
in expression starting at /home/pkgeval/.julia/packages/PlmDCA/Zmwgc/src/precompile.jl:3
in expression starting at /home/pkgeval/.julia/packages/PlmDCA/Zmwgc/src/PlmDCA.jl:1
in expression starting at stdin:5

  1 dependency had output during precompilation:
┌ PlmDCA
│  [Output was shown above]
└  
ERROR: LoadError: The following 1 package failed to precompile:

PlmDCA 
Failed to precompile PlmDCA [06784e46-84fc-5582-b8de-0e984192b79e] to "/home/pkgeval/.julia/compiled/v1.14/PlmDCA/jl_4z7gjk" (ProcessExited(1)).

in expression starting at /home/pkgeval/.julia/packages/PlmDCA/Zmwgc/test/runtests.jl:1

Testing failed after 147.27s

ERROR: LoadError: Package PlmDCA errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3067
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2916 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:237
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [14] _start()
    @ Base ./client.jl:585
in expression starting at /PkgEval.jl/scripts/evaluate.jl:228

PkgEval failed after 198.37s: package fails to precompile