Package evaluation to test Omniscape on Julia 1.14.0-DEV.1441 (812f3beb0a*) started at 2025-12-30T22:13:35.741 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 10.61s ################################################################################ # Installation # Installing Omniscape... Resolving package versions... Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed Lz4_jll ───────────────────── v1.10.1+0 Installed MosaicViews ───────────────── v0.3.4 Installed Libtiff_jll ───────────────── v4.7.2+0 Installed MKL_jll ───────────────────── v2025.2.0+0 Installed Extents ───────────────────── v0.1.6 Installed OrderedCollections ────────── v1.8.1 Installed PreallocationTools ────────── v0.4.34 Installed Xorg_libpciaccess_jll ─────── v0.18.1+0 Installed Giflib_jll ────────────────── v5.2.3+0 Installed SimpleWeightedGraphs ──────── v1.5.1 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed HDF5_jll ──────────────────── v1.14.6+0 Installed EnumX ─────────────────────── v1.0.5 Installed Tables ────────────────────── v1.12.1 Installed InverseFunctions ──────────── v0.1.17 Installed Jieko ─────────────────────── v0.2.1 Installed LERC_jll ──────────────────── v4.0.1+0 Installed Reexport ──────────────────── v1.2.2 Installed Missings ──────────────────── v1.2.0 Installed IterativeSolvers ──────────── v0.9.4 Installed Preferences ───────────────── v1.5.1 Installed LinearSolve ───────────────── v3.55.0 Installed TableTraits ───────────────── v1.0.1 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed MappedArrays ──────────────── v0.4.3 Installed boost_jll ─────────────────── v1.87.0+0 Installed HDF4_jll ──────────────────── v4.3.2+0 Installed ADTypes ───────────────────── v1.21.0 Installed SortingAlgorithms ─────────── v1.2.2 Installed RecursiveArrayTools ───────── v3.42.1 Installed Arrow_jll ─────────────────── v19.0.1+0 Installed Inflate ───────────────────── v0.1.5 Installed DiskArrays ────────────────── v0.4.18 Installed libaec_jll ────────────────── v1.1.4+0 Installed MacroTools ────────────────── v0.5.16 Installed FillArrays ────────────────── v1.15.0 Installed DelimitedFiles ────────────── v1.9.1 Installed DataStructures ────────────── v0.19.3 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed oneTBB_jll ────────────────── v2022.0.0+1 Installed ArnoldiMethod ─────────────── v0.4.0 Installed IntelOpenMP_jll ───────────── v2025.2.0+0 Installed ExprTools ─────────────────── v0.1.10 Installed CEnum ─────────────────────── v0.5.0 Installed ArrayInterface ────────────── v7.22.0 Installed StatsBase ─────────────────── v0.34.9 Installed DataValueInterfaces ───────── v1.0.0 Installed IrrationalConstants ───────── v0.2.6 Installed GPUArraysCore ─────────────── v0.2.0 Installed libpng_jll ────────────────── v1.6.53+0 Installed libzip_jll ────────────────── v1.11.3+0 Installed Expat_jll ─────────────────── v2.7.3+0 Installed LoggingExtras ─────────────── v1.2.0 Installed ConcreteStructs ───────────── v0.2.3 Installed Hwloc_jll ─────────────────── v2.12.2+0 Installed OpenMPI_jll ───────────────── v5.0.9+0 Installed Qhull_jll ─────────────────── v10008.0.1004+0 Installed libwebp_jll ───────────────── v1.6.0+0 Installed SimpleTraits ──────────────── v0.9.5 Installed ColorVectorSpace ──────────── v0.11.0 Installed ArrayLayouts ──────────────── v1.12.2 Installed Setfield ──────────────────── v1.1.2 Installed GZip ──────────────────────── v0.6.2 Installed snappy_jll ────────────────── v1.2.3+0 Installed LRUCache ──────────────────── v1.6.2 Installed DocStringExtensions ───────── v0.9.5 Installed ImageCore ─────────────────── v0.10.5 Installed CompositionsBase ──────────── v0.1.2 Installed OpenJpeg_jll ──────────────── v2.5.5+0 Installed StackViews ────────────────── v0.1.2 Installed CommonSolve ───────────────── v0.2.6 Installed MPICH_jll ─────────────────── v4.3.2+0 Installed Moshi ─────────────────────── v0.3.7 Installed MicrosoftMPI_jll ──────────── v10.1.4+3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed FunctionWrappersWrappers ──── v0.1.3 Installed AliasTables ───────────────── v1.1.3 Installed RecipesBase ───────────────── v1.3.4 Installed Circuitscape ──────────────── v5.15.0 Installed DataAPI ───────────────────── v1.16.0 Installed StaticArraysCore ──────────── v1.4.4 Installed SciMLStructures ───────────── v1.9.0 Installed SciMLOperators ────────────── v1.14.1 Installed Krylov ────────────────────── v0.10.3 Installed Libglvnd_jll ──────────────── v1.7.1+1 Installed Colors ────────────────────── v0.13.1 Installed StaticArrays ──────────────── v1.9.16 Installed SciMLPublic ───────────────── v1.0.1 Installed ColorTypes ────────────────── v0.12.1 Installed Requires ──────────────────── v1.3.1 Installed FunctionWrappers ──────────── v1.1.3 Installed ICU_jll ───────────────────── v76.2.0+0 Installed LogExpFunctions ───────────── v0.3.29 Installed GeoFormatTypes ────────────── v0.4.5 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed ArchGDAL ──────────────────── v0.10.10 Installed Thrift_jll ────────────────── v0.21.1+0 Installed JLLWrappers ───────────────── v1.7.1 Installed SciMLBase ─────────────────── v2.131.0 Installed XZ_jll ────────────────────── v5.8.2+0 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed JpegTurbo_jll ─────────────── v3.1.4+0 Installed muparser_jll ──────────────── v2.3.5+0 Installed NetCDF_jll ────────────────── v401.900.300+0 Installed AlgebraicMultigrid ────────── v1.1.0 Installed Accessors ─────────────────── v0.1.43 Installed PaddedViews ───────────────── v0.5.12 Installed Graphs ────────────────────── v1.13.2 Installed Kerberos_krb5_jll ─────────── v1.21.3+0 Installed Adapt ─────────────────────── v4.4.0 Installed RuntimeGeneratedFunctions ─── v0.5.16 Installed ConstructionBase ──────────── v1.6.0 Installed SymbolicIndexingInterface ─── v0.3.46 Installed libgeotiff_jll ────────────── v100.702.400+0 Installed Compat ────────────────────── v4.18.1 Installed Xorg_libX11_jll ───────────── v1.8.12+0 Installed TensorCore ────────────────── v0.1.1 Installed Statistics ────────────────── v1.11.1 Installed LazyArrays ────────────────── v2.9.4 Installed PrecompileTools ───────────── v1.3.3 Installed StatsAPI ──────────────────── v1.8.0 Installed Blosc_jll ─────────────────── v1.21.7+0 Installed ProgressMeter ─────────────── v1.11.0 Installed ExproniconLite ────────────── v0.10.14 Installed OffsetArrays ──────────────── v1.17.0 Installed PROJ_jll ──────────────────── v902.700.0+0 Installed Omniscape ─────────────────── v0.6.2 Installed ChainRulesCore ────────────── v1.26.0 Installed LibPQ_jll ─────────────────── v16.8.0+0 Installed XML2_jll ──────────────────── v2.13.9+0 Installed PtrArrays ─────────────────── v1.3.0 Installed LittleCMS_jll ─────────────── v2.17.0+0 Installed FixedPointNumbers ─────────── v0.8.5 Installed SciMLLogging ──────────────── v1.8.0 Installed MPIPreferences ────────────── v0.1.11 Installed GDAL ──────────────────────── v1.12.0 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed GDAL_jll ──────────────────── v304.1200.100+0 Installed Xorg_libXext_jll ──────────── v1.3.7+0 Installed GEOS_jll ──────────────────── v3.14.1+0 Installed MPItrampoline_jll ─────────── v5.5.4+0 Installed SQLite_jll ────────────────── v3.48.0+0 Installed GeoInterface ──────────────── v1.6.0 Installed brotli_jll ────────────────── v1.2.0+0 Installing 46 artifacts Installed artifact LERC 272.9 KiB Installed artifact libpng 329.0 KiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact LittleCMS 752.2 KiB Installed artifact XML2 2.5 MiB Installed artifact Libtiff 2.3 MiB Installed artifact MPICH 3.3 MiB Installed artifact XZ 1.5 MiB Installed artifact NetCDF 936.0 KiB Installed artifact snappy 43.9 KiB Installed artifact SQLite 5.0 MiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact Libglvnd 833.5 KiB Installed artifact OpenJpeg 421.8 KiB Installed artifact libgeotiff 151.8 KiB Installed artifact libwebp 2.6 MiB Installed artifact libaec 49.6 KiB Installed artifact Hwloc 3.5 MiB Installed artifact muparser 205.5 KiB Installed artifact Xorg_libpciaccess 24.8 KiB Installed artifact libzip 177.6 KiB Installed artifact Bzip2 503.5 KiB Installed artifact brotli 430.3 KiB Installed artifact GEOS 2.4 MiB Installed artifact Qhull 2.5 MiB Installed artifact Kerberos_krb5 4.5 MiB Installed artifact Expat 283.3 KiB Installed artifact HDF4 1009.8 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact HDF5 5.7 MiB Installed artifact Giflib 154.6 KiB Installed artifact Libiconv 1.9 MiB Installed artifact PROJ 3.9 MiB Installed artifact JpegTurbo 1.4 MiB Installed artifact GDAL 18.1 MiB Installed artifact Lz4 239.7 KiB Installed artifact Blosc 44.2 KiB Installed artifact Thrift 2.0 MiB Installed artifact ICU 15.6 MiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact Arrow 10.3 MiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact LibPQ 33.8 MiB Installed artifact boost 24.9 MiB Updating `~/.julia/environments/v1.14/Project.toml` [a38d70fc] + Omniscape v0.6.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 [2169fc97] + AlgebraicMultigrid v1.1.0 [66dad0bd] + AliasTables v1.1.3 [c9ce4bd3] + ArchGDAL v0.10.10 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.22.0 [4c555306] + ArrayLayouts v1.12.2 [fa961155] + CEnum v0.5.0 [d360d2e6] + ChainRulesCore v1.26.0 [2b7a1792] + Circuitscape v5.15.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [38540f10] + CommonSolve v0.2.6 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [3c3547ce] + DiskArrays v0.4.18 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [411431e0] + Extents v0.1.6 [1a297f60] + FillArrays v1.15.0 [53c48c17] + FixedPointNumbers v0.8.5 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [add2ef01] + GDAL v1.12.0 [46192b85] + GPUArraysCore v0.2.0 [92fee26a] + GZip v0.6.2 [68eda718] + GeoFormatTypes v0.4.5 [cf35fbd7] + GeoInterface v1.6.0 [86223c79] + Graphs v1.13.2 [a09fc81d] + ImageCore v0.10.5 [d25df0c9] + Inflate v0.1.5 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [ae98c720] + Jieko v0.2.1 [ba0b0d4f] + Krylov v0.10.3 [8ac3fa9e] + LRUCache v1.6.2 [5078a376] + LazyArrays v2.9.4 [7ed4a6bd] + LinearSolve v3.55.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [dbb5928d] + MappedArrays v0.4.3 [e1d29d7a] + Missings v1.2.0 [e94cdb99] + MosaicViews v0.3.4 [2e0e35c7] + Moshi v0.3.7 [6fe1bfb0] + OffsetArrays v1.17.0 [a38d70fc] + Omniscape v0.6.2 [bac558e1] + OrderedCollections v1.8.1 [5432bcbf] + PaddedViews v0.5.12 ⌅ [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.42.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.16 [0bca4576] + SciMLBase v2.131.0 [a6db7da4] + SciMLLogging v1.8.0 [c0aeaf25] + SciMLOperators v1.14.1 [431bcebd] + SciMLPublic v1.0.1 [53ae85a6] + SciMLStructures v1.9.0 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.5 [47aef6b3] + SimpleWeightedGraphs v1.5.1 [a2af1166] + SortingAlgorithms v1.2.2 [cae243ae] + StackViews v0.1.2 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.9 [2efcf032] + SymbolicIndexingInterface v0.3.46 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [8ce61222] + Arrow_jll v19.0.1+0 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 [2e619515] + Expat_jll v2.7.3+0 [a7073274] + GDAL_jll v304.1200.100+0 [d604d12d] + GEOS_jll v3.14.1+0 [59f7168a] + Giflib_jll v5.2.3+0 [818ab7a1] + HDF4_jll v4.3.2+0 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [a51ab1cf] + ICU_jll v76.2.0+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aacddb02] + JpegTurbo_jll v3.1.4+0 [b39eb1a6] + Kerberos_krb5_jll v1.21.3+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [08be9ffa] + LibPQ_jll v16.8.0+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [89763e89] + Libtiff_jll v4.7.2+0 [d3a379c0] + LittleCMS_jll v2.17.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [856f044c] + MKL_jll v2025.2.0+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [7243133f] + NetCDF_jll v401.900.300+0 [643b3616] + OpenJpeg_jll v2.5.5+0 [fe0851c0] + OpenMPI_jll v5.0.9+0 [58948b4f] + PROJ_jll v902.700.0+0 [784f63db] + Qhull_jll v10008.0.1004+0 [76ed43ae] + SQLite_jll v3.48.0+0 [e0b8ae26] + Thrift_jll v0.21.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.2+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [28df3c45] + boost_jll v1.87.0+0 [4611771a] + brotli_jll v1.2.0+0 [477f73a3] + libaec_jll v1.1.4+0 [06c338fa] + libgeotiff_jll v100.702.400+0 [b53b4c65] + libpng_jll v1.6.53+0 [c5f90fcd] + libwebp_jll v1.6.0+0 [337d8026] + libzip_jll v1.11.3+0 [888e69b1] + muparser_jll v2.3.5+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [fe1e1685] + snappy_jll v1.2.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 39.68s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 Precompilation failed after 13.0s ################################################################################ # Testing # Testing Omniscape Status `/tmp/jl_IbyUxZ/Project.toml` [c9ce4bd3] ArchGDAL v0.10.10 [2b7a1792] Circuitscape v5.15.0 [8bb1440f] DelimitedFiles v1.9.1 [a38d70fc] Omniscape v0.6.2 [92933f4c] ProgressMeter v1.11.0 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.9 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_IbyUxZ/Manifest.toml` [47edcb42] ADTypes v1.21.0 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.4.0 [2169fc97] AlgebraicMultigrid v1.1.0 [66dad0bd] AliasTables v1.1.3 [c9ce4bd3] ArchGDAL v0.10.10 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.22.0 [4c555306] ArrayLayouts v1.12.2 [fa961155] CEnum v0.5.0 [d360d2e6] ChainRulesCore v1.26.0 [2b7a1792] Circuitscape v5.15.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [38540f10] CommonSolve v0.2.6 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [3c3547ce] DiskArrays v0.4.18 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [411431e0] Extents v0.1.6 [1a297f60] FillArrays v1.15.0 [53c48c17] FixedPointNumbers v0.8.5 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [add2ef01] GDAL v1.12.0 [46192b85] GPUArraysCore v0.2.0 [92fee26a] GZip v0.6.2 [68eda718] GeoFormatTypes v0.4.5 [cf35fbd7] GeoInterface v1.6.0 [86223c79] Graphs v1.13.2 [a09fc81d] ImageCore v0.10.5 [d25df0c9] Inflate v0.1.5 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [ae98c720] Jieko v0.2.1 [ba0b0d4f] Krylov v0.10.3 [8ac3fa9e] LRUCache v1.6.2 [5078a376] LazyArrays v2.9.4 [7ed4a6bd] LinearSolve v3.55.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [dbb5928d] MappedArrays v0.4.3 [e1d29d7a] Missings v1.2.0 [e94cdb99] MosaicViews v0.3.4 [2e0e35c7] Moshi v0.3.7 [6fe1bfb0] OffsetArrays v1.17.0 [a38d70fc] Omniscape v0.6.2 [bac558e1] OrderedCollections v1.8.1 [5432bcbf] PaddedViews v0.5.12 ⌅ [d236fae5] PreallocationTools v0.4.34 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.42.1 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [7e49a35a] RuntimeGeneratedFunctions v0.5.16 [0bca4576] SciMLBase v2.131.0 [a6db7da4] SciMLLogging v1.8.0 [c0aeaf25] SciMLOperators v1.14.1 [431bcebd] SciMLPublic v1.0.1 [53ae85a6] SciMLStructures v1.9.0 [efcf1570] Setfield v1.1.2 [699a6c99] SimpleTraits v0.9.5 [47aef6b3] SimpleWeightedGraphs v1.5.1 [a2af1166] SortingAlgorithms v1.2.2 [cae243ae] StackViews v0.1.2 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.9 [2efcf032] SymbolicIndexingInterface v0.3.46 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [8ce61222] Arrow_jll v19.0.1+0 [0b7ba130] Blosc_jll v1.21.7+0 [6e34b625] Bzip2_jll v1.0.9+0 [2e619515] Expat_jll v2.7.3+0 [a7073274] GDAL_jll v304.1200.100+0 [d604d12d] GEOS_jll v3.14.1+0 [59f7168a] Giflib_jll v5.2.3+0 [818ab7a1] HDF4_jll v4.3.2+0 ⌅ [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.2+0 [a51ab1cf] ICU_jll v76.2.0+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [aacddb02] JpegTurbo_jll v3.1.4+0 [b39eb1a6] Kerberos_krb5_jll v1.21.3+0 [88015f11] LERC_jll v4.0.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [08be9ffa] LibPQ_jll v16.8.0+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [89763e89] Libtiff_jll v4.7.2+0 [d3a379c0] LittleCMS_jll v2.17.0+0 [5ced341a] Lz4_jll v1.10.1+0 [856f044c] MKL_jll v2025.2.0+0 [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [7243133f] NetCDF_jll v401.900.300+0 [643b3616] OpenJpeg_jll v2.5.5+0 [fe0851c0] OpenMPI_jll v5.0.9+0 [58948b4f] PROJ_jll v902.700.0+0 [784f63db] Qhull_jll v10008.0.1004+0 [76ed43ae] SQLite_jll v3.48.0+0 [e0b8ae26] Thrift_jll v0.21.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [ffd25f8a] XZ_jll v5.8.2+0 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [28df3c45] boost_jll v1.87.0+0 [4611771a] brotli_jll v1.2.0+0 [477f73a3] libaec_jll v1.1.4+0 [06c338fa] libgeotiff_jll v100.702.400+0 [b53b4c65] libpng_jll v1.6.53+0 [c5f90fcd] libwebp_jll v1.6.0+0 [337d8026] libzip_jll v1.11.3+0 [888e69b1] muparser_jll v2.3.5+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [fe1e1685] snappy_jll v1.2.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests...  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB 1 dependency had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ [ Info: conditional connectivity tests passed [ Info: target tests passed [ Info: Testing error throws ┌ Error: You did not provide a source raster file path. Set source_from_resistance to true in your config if you want to generate source strength from the resistance layer. └ @ Omniscape ~/.julia/packages/Omniscape/VSLPS/src/main.jl:455 ┌ Error: Resistance (or conductance) surface contains 0 or negative values └ @ Omniscape ~/.julia/packages/Omniscape/VSLPS/src/errors_warnings.jl:14 ┌ Error: The following arguments are missing from your .ini (or config Dictionary) with no defaults: │ radius project_name └ @ Omniscape ~/.julia/packages/Omniscape/VSLPS/src/errors_warnings.jl:22 ┌ Error: n_conditions must be one of ["1", "2"]. Got 3. └ @ Omniscape ~/.julia/packages/Omniscape/VSLPS/src/errors_warnings.jl:138 ┌ Error: compare_to_future must be one of ["none", "1", "2", "both"]. Got foo. └ @ Omniscape ~/.julia/packages/Omniscape/VSLPS/src/errors_warnings.jl:123 ┌ Error: comparison1 must be one of ["equal", "within"]. Got foo. └ @ Omniscape ~/.julia/packages/Omniscape/VSLPS/src/errors_warnings.jl:128 ┌ Error: comparison2 must be one of ["equal", "within"]. Got bar. └ @ Omniscape ~/.julia/packages/Omniscape/VSLPS/src/errors_warnings.jl:133 Test Summary: | Pass Total Time Internals | 10 10 1m01.7s [ Info: Starting up Omniscape with 1 worker and double precision [ Info: Using Circuitscape with the cg+amg solver... [ Info: Calculating block artifact correction array... run_omnsicape(): Error During Test at /home/pkgeval/.julia/packages/Omniscape/VSLPS/test/runtests.jl:95 Got exception outside of a @test MethodError: no method matching missingarray_to_array(::Matrix{Union{Missing, Float64}}, ::Int64) This error has been manually thrown, explicitly, so the method may exist but be intentionally marked as unimplemented. Closest candidates are: missingarray_to_array(::Array{Union{Missing, T}, N} where {N, T<:Number}, ::Number) @ Omniscape ~/.julia/packages/Omniscape/VSLPS/src/utils.jl:614 Stacktrace: [1] calc_correction(arguments::Dict{String, Int64}, os_flags::Omniscape.OmniscapeFlags, cs_cfg::Dict{String, String}, condition_layers::Omniscape.ConditionLayers{Float64}, conditions::Omniscape.Conditions, precision::DataType) @ Omniscape ~/.julia/packages/Omniscape/VSLPS/src/utils.jl:471 [2] run_omniscape(cfg::Dict{String, String}, resistance::Matrix{Union{Missing, Float64}}; reclass_table::Nothing, source_strength::Matrix{Union{Missing, Float64}}, condition1::Matrix{Union{Missing, Float64}}, condition2::Matrix{Union{Missing, Float64}}, condition1_future::Matrix{Union{Missing, Float64}}, condition2_future::Matrix{Union{Missing, Float64}}, wkt::String, geotransform::Vector{Float64}, write_outputs::Bool) @ Omniscape ~/.julia/packages/Omniscape/VSLPS/src/main.jl:252 [3] kwcall(::@NamedTuple{source_strength::Matrix{Union{Missing, Float64}}, condition1::Matrix{Union{Missing, Float64}}, condition2::Matrix{Union{Missing, Float64}}, condition1_future::Matrix{Union{Missing, Float64}}, condition2_future::Matrix{Union{Missing, Float64}}, geotransform::Vector{Float64}, wkt::String, reclass_table::Nothing, write_outputs::Bool}, ::typeof(run_omniscape), cfg::Dict{String, String}, resistance::Matrix{Union{Missing, Float64}}) @ Omniscape ~/.julia/packages/Omniscape/VSLPS/src/main.jl:95 [4] run_omniscape(path::String) @ Omniscape ~/.julia/packages/Omniscape/VSLPS/src/main.jl:558 [5] top-level scope @ ~/.julia/packages/Omniscape/VSLPS/test/runtests.jl:97 [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [7] macro expansion @ ~/.julia/packages/Omniscape/VSLPS/test/runtests.jl:97 [inlined] [8] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [9] top-level scope @ none:6 [10] eval(m::Module, e::Any) @ Core ./boot.jl:489 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [12] _start() @ Base ./client.jl:585 Test Summary: | Error Total Time run_omnsicape() | 1 1 9.1s RNG of the outermost testset: Random.Xoshiro(0xc00cd44d8d88ec97, 0x6ce554bae6f872a2, 0x36aeb98e456b41c6, 0x6f3d51970a106069, 0x22d3ad66e3fd303a) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/Omniscape/VSLPS/test/runtests.jl:95 Testing failed after 670.05s ERROR: LoadError: Package Omniscape errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3067 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2916 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval failed after 873.4s: package tests unexpectedly errored