Package evaluation to test MLJNonnegativeMatrixFactorization on Julia 1.14.0-DEV.1441 (812f3beb0a*) started at 2025-12-30T20:49:42.159 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 11.24s ################################################################################ # Installation # Installing MLJNonnegativeMatrixFactorization... Resolving package versions... Installed Rmath_jll ───────────────────────── v0.5.1+0 Installed DefineSingletons ────────────────── v0.1.2 Installed CompositionsBase ────────────────── v0.1.2 Installed MicroCollections ────────────────── v0.2.0 Installed NameResolution ──────────────────── v0.1.5 Installed MacroTools ──────────────────────── v0.5.16 Installed DataStructures ──────────────────── v0.19.3 Installed MultivariateStats ───────────────── v0.10.3 Installed Adapt ───────────────────────────── v4.4.0 Installed FillArrays ──────────────────────── v1.15.0 Installed ConstructionBase ────────────────── v1.6.0 Installed HypergeometricFunctions ─────────── v0.3.28 Installed DelimitedFiles ──────────────────── v1.9.1 Installed AliasTables ─────────────────────── v1.1.3 Installed ContextVariablesX ───────────────── v0.1.3 Installed FLoops ──────────────────────────── v0.2.2 Installed IteratorInterfaceExtensions ─────── v1.0.0 Installed HashArrayMappedTries ────────────── v0.2.0 Installed ScientificTypes ─────────────────── v3.1.2 Installed OrderedCollections ──────────────── v1.8.1 Installed Compat ──────────────────────────── v4.18.1 Installed JuliaVariables ──────────────────── v0.2.4 Installed StatsBase ───────────────────────── v0.34.9 Installed RecipesBase ─────────────────────── v1.3.4 Installed InvertedIndices ─────────────────── v1.3.1 Installed DataAPI ─────────────────────────── v1.16.0 Installed Statistics ──────────────────────── v1.11.1 Installed InitialValues ───────────────────── v0.3.1 Installed NNlib ───────────────────────────── v0.9.32 Installed Atomix ──────────────────────────── v1.1.2 Installed PrecompileTools ─────────────────── v1.3.3 Installed DataValueInterfaces ─────────────── v1.0.0 Installed StatsAPI ────────────────────────── v1.8.0 Installed MLCore ──────────────────────────── v1.0.0 Installed ProgressMeter ───────────────────── v1.11.0 Installed ArgCheck ────────────────────────── v2.5.0 Installed MLUtils ─────────────────────────── v0.4.8 Installed StaticArrays ────────────────────── v1.9.16 Installed MLJNonnegativeMatrixFactorization ─ v0.1.1 Installed StaticArraysCore ────────────────── v1.4.4 Installed GPUArraysCore ───────────────────── v0.2.0 Installed PrettyPrint ─────────────────────── v0.2.0 Installed IrrationalConstants ─────────────── v0.2.6 Installed Distances ───────────────────────── v0.10.12 Installed BangBang ────────────────────────── v0.4.6 Installed ChainRulesCore ──────────────────── v1.26.0 Installed QuadGK ──────────────────────────── v2.11.2 Installed OpenSpecFun_jll ─────────────────── v0.5.6+0 Installed ColorTypes ──────────────────────── v0.12.1 Installed Requires ────────────────────────── v1.3.1 Installed SimpleTraits ────────────────────── v0.9.5 Installed StringManipulation ──────────────── v0.4.2 Installed LogExpFunctions ─────────────────── v0.3.29 Installed StatisticalMeasuresBase ─────────── v0.1.3 Installed FLoopsBase ──────────────────────── v0.1.1 Installed CategoricalDistributions ────────── v0.2.1 Installed ComputationalResources ──────────── v0.3.2 Installed KernelAbstractions ──────────────── v0.9.39 Installed Rmath ───────────────────────────── v0.9.0 Installed PrettyTables ────────────────────── v3.1.2 Installed ScopedValues ────────────────────── v1.5.0 Installed Parameters ──────────────────────── v0.12.3 Installed Distributions ───────────────────── v0.25.122 Installed MLJBase ─────────────────────────── v1.12.1 Installed SplittablesBase ─────────────────── v0.1.15 Installed UnsafeAtomics ───────────────────── v0.3.0 Installed Arpack_jll ──────────────────────── v3.5.2+0 Installed PtrArrays ───────────────────────── v1.3.0 Installed StatsFuns ───────────────────────── v1.5.2 Installed Tables ──────────────────────────── v1.12.1 Installed Transducers ─────────────────────── v0.4.85 Installed Arpack ──────────────────────────── v0.5.4 Installed InverseFunctions ────────────────── v0.1.17 Installed Reexport ────────────────────────── v1.2.2 Installed SpecialFunctions ────────────────── v2.6.1 Installed FixedPointNumbers ───────────────── v0.8.5 Installed Setfield ────────────────────────── v1.1.2 Installed Preferences ─────────────────────── v1.5.1 Installed Missings ────────────────────────── v1.2.0 Installed Baselet ─────────────────────────── v0.1.1 Installed ScientificTypesBase ─────────────── v3.0.0 Installed JLLWrappers ─────────────────────── v1.7.1 Installed ShowCases ───────────────────────── v0.1.0 Installed TableTraits ─────────────────────── v1.0.1 Installed LaTeXStrings ────────────────────── v1.4.0 Installed Crayons ─────────────────────────── v4.1.1 Installed PDMats ──────────────────────────── v0.11.37 Installed SortingAlgorithms ───────────────── v1.2.2 Installed UnPack ──────────────────────────── v1.0.2 Installed StatisticalTraits ───────────────── v3.5.0 Installed CategoricalArrays ───────────────── v1.0.2 Installed LearnAPI ────────────────────────── v2.0.1 Installed MLStyle ─────────────────────────── v0.4.17 Installed MLJModelInterface ───────────────── v1.12.1 Installed DocStringExtensions ─────────────── v0.9.5 Installed Accessors ───────────────────────── v0.1.43 Installing 3 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Rmath 121.9 KiB Installed artifact Arpack 138.3 KiB Updating `~/.julia/environments/v1.14/Project.toml` [5fbdd59d] + MLJNonnegativeMatrixFactorization v0.1.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [7d9fca2a] + Arpack v0.5.4 [a9b6321e] + Atomix v1.1.2 [198e06fe] + BangBang v0.4.6 [9718e550] + Baselet v0.1.1 [324d7699] + CategoricalArrays v1.0.2 [af321ab8] + CategoricalDistributions v0.2.1 [d360d2e6] + ChainRulesCore v1.26.0 [3da002f7] + ColorTypes v0.12.1 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [ed09eef8] + ComputationalResources v0.3.2 [187b0558] + ConstructionBase v1.6.0 [6add18c4] + ContextVariablesX v0.1.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [1a297f60] + FillArrays v1.15.0 [53c48c17] + FixedPointNumbers v0.8.5 [46192b85] + GPUArraysCore v0.2.0 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [22cec73e] + InitialValues v0.3.1 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [b14d175d] + JuliaVariables v0.2.4 [63c18a36] + KernelAbstractions v0.9.39 [b964fa9f] + LaTeXStrings v1.4.0 [92ad9a40] + LearnAPI v2.0.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [c2834f40] + MLCore v1.0.0 [a7f614a8] + MLJBase v1.12.1 [e80e1ace] + MLJModelInterface v1.12.1 [5fbdd59d] + MLJNonnegativeMatrixFactorization v0.1.1 [d8e11817] + MLStyle v0.4.17 [f1d291b0] + MLUtils v0.4.8 [1914dd2f] + MacroTools v0.5.16 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [6f286f6a] + MultivariateStats v0.10.3 [872c559c] + NNlib v0.9.32 [71a1bf82] + NameResolution v0.1.5 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [d96e819e] + Parameters v0.12.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [8162dcfd] + PrettyPrint v0.2.0 [08abe8d2] + PrettyTables v3.1.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [321657f4] + ScientificTypes v3.1.2 [30f210dd] + ScientificTypesBase v3.0.0 [7e506255] + ScopedValues v1.5.0 [efcf1570] + Setfield v1.1.2 [605ecd9f] + ShowCases v0.1.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [c062fc1d] + StatisticalMeasuresBase v0.1.3 [64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.9 [4c63d2b9] + StatsFuns v1.5.2 [892a3eda] + StringManipulation v0.4.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [28d57a85] + Transducers v0.4.85 [3a884ed6] + UnPack v1.0.2 [013be700] + UnsafeAtomics v0.3.0 ⌅ [68821587] + Arpack_jll v3.5.2+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 9.85s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:585 Precompilation failed after 13.12s ################################################################################ # Testing # Testing MLJNonnegativeMatrixFactorization Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Installed SentinelArrays ───────── v1.4.9 Installed URIs ─────────────────── v1.6.1 Installed NearestNeighbors ─────── v0.4.26 Installed MLJBalancing ─────────── v0.1.5 Installed MLJTestInterface ─────── v0.2.9 Installed CodecZlib ────────────── v0.7.8 Installed FeatureSelection ─────── v0.2.4 Installed StatisticalMeasures ──── v0.3.3 Installed AbstractTrees ────────── v0.4.5 Installed BitBasis ─────────────── v0.9.10 Installed ARFFFiles ────────────── v1.6.0 Installed StableRNGs ───────────── v1.0.4 Installed BitFlags ─────────────── v0.1.9 Installed LoggingExtras ────────── v1.2.0 Installed Scratch ──────────────── v1.3.0 Installed HTTP ─────────────────── v1.10.19 Installed MLJTuning ────────────── v0.8.9 Installed SimpleBufferStream ───── v1.2.0 Installed MLJEnsembles ─────────── v0.4.4 Installed TableOperations ──────── v1.2.0 Installed RandomizedLinAlg ─────── v0.1.0 Installed OpenML ───────────────── v0.3.3 Installed RelocatableFolders ───── v1.0.1 Installed PrettyPrinting ───────── v0.4.2 Installed ConcurrentUtilities ──── v2.5.0 Installed Combinatorics ────────── v1.1.0 Installed NonNegLeastSquares ───── v0.4.1 Installed Parsers ──────────────── v2.8.3 Installed JSON ─────────────────── v0.21.4 Installed MLJModels ────────────── v0.18.3 Installed EarlyStopping ────────── v0.3.0 Installed FilePathsBase ────────── v0.9.24 Installed TranscodingStreams ───── v0.11.3 Installed ExceptionUnwrapping ──── v0.1.11 Installed IterationControl ─────── v0.5.4 Installed NearestNeighborModels ── v0.2.3 Installed MbedTLS ──────────────── v1.1.9 Installed NMF ──────────────────── v1.0.3 Installed OpenSSL ──────────────── v1.6.1 Installed MLFlowClient ─────────── v0.5.1 Installed MLJIteration ─────────── v0.6.4 Installed MLJTestIntegration ───── v0.5.4 Installed MLJ ──────────────────── v0.22.0 Installed MbedTLS_jll ──────────── v2.28.1010+0 Installed MLJTransforms ────────── v0.1.4 Installed MLJFlow ──────────────── v0.5.0 Installed LatinHypercubeSampling ─ v1.9.0 Installing 1 artifacts Installed artifact MbedTLS 2.2 MiB Updating `/tmp/jl_mdmpeZ/Project.toml` [b4f34e82] ↑ Distances v0.10.11 ⇒ v0.10.12 [31c24e10] ↑ Distributions v0.25.109 ⇒ v0.25.122 [a7f614a8] ↑ MLJBase v1.6.0 ⇒ v1.12.1 [5fbdd59d] + MLJNonnegativeMatrixFactorization v0.1.1 [697918b4] ↑ MLJTestIntegration v0.5.2 ⇒ v0.5.4 [6ef6ca0d] ↑ NMF v1.0.2 ⇒ v1.0.3 [860ef19b] ↑ StableRNGs v1.0.2 ⇒ v1.0.4 [bd369af6] ↑ Tables v1.11.1 ⇒ v1.12.1 [37e2e46d] ~ LinearAlgebra ⇒ v1.13.0 [9a3f8284] ~ Random ⇒ v1.11.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_mdmpeZ/Manifest.toml` [da404889] ↑ ARFFFiles v1.4.1 ⇒ v1.6.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] ↑ Adapt v4.0.4 ⇒ v4.4.0 [dce04be8] ↑ ArgCheck v2.3.0 ⇒ v2.5.0 [7d9fca2a] + Arpack v0.5.4 [a9b6321e] ↑ Atomix v0.1.0 ⇒ v1.1.2 [198e06fe] ↑ BangBang v0.3.40 ⇒ v0.4.6 [50ba71b6] + BitBasis v0.9.10 [fa961155] - CEnum v0.5.0 [49dc2e85] - Calculus v0.5.1 [324d7699] ↑ CategoricalArrays v0.10.8 ⇒ v1.0.2 [af321ab8] ↑ CategoricalDistributions v0.1.15 ⇒ v0.2.1 [d360d2e6] ↑ ChainRulesCore v1.24.0 ⇒ v1.26.0 [944b1d66] ↑ CodecZlib v0.7.5 ⇒ v0.7.8 [3da002f7] ↑ ColorTypes v0.11.5 ⇒ v0.12.1 [861a8166] ↑ Combinatorics v1.0.2 ⇒ v1.1.0 [34da2185] ↑ Compat v4.15.0 ⇒ v4.18.1 [f0e56b4a] ↑ ConcurrentUtilities v2.4.2 ⇒ v2.5.0 [187b0558] ↑ ConstructionBase v1.5.5 ⇒ v1.6.0 [864edb3b] ↑ DataStructures v0.18.20 ⇒ v0.19.3 [b4f34e82] ↑ Distances v0.10.11 ⇒ v0.10.12 [31c24e10] ↑ Distributions v0.25.109 ⇒ v0.25.122 [ffbed154] ↑ DocStringExtensions v0.9.3 ⇒ v0.9.5 [fa6b7ba4] - DualNumbers v0.6.8 [460bff9d] ↑ ExceptionUnwrapping v0.1.10 ⇒ v0.1.11 [cc61a311] ↑ FLoops v0.2.1 ⇒ v0.2.2 [33837fe5] ↑ FeatureSelection v0.1.1 ⇒ v0.2.4 [48062228] ↑ FilePathsBase v0.9.21 ⇒ v0.9.24 [1a297f60] ↑ FillArrays v1.11.0 ⇒ v1.15.0 [46192b85] ↑ GPUArraysCore v0.1.6 ⇒ v0.2.0 [cd3eb016] ↑ HTTP v1.10.8 ⇒ v1.10.19 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] ↑ HypergeometricFunctions v0.3.23 ⇒ v0.3.28 [3587e190] + InverseFunctions v0.1.17 [41ab1584] ↑ InvertedIndices v1.3.0 ⇒ v1.3.1 [92d709cd] ↑ IrrationalConstants v0.2.2 ⇒ v0.2.6 [692b3bcd] ↑ JLLWrappers v1.5.0 ⇒ v1.7.1 [63c18a36] ↑ KernelAbstractions v0.9.22 ⇒ v0.9.39 [929cbde3] - LLVM v8.0.0 [b964fa9f] ↑ LaTeXStrings v1.3.1 ⇒ v1.4.0 [92ad9a40] ↑ LearnAPI v0.1.0 ⇒ v2.0.1 [2ab3a3ac] ↑ LogExpFunctions v0.3.28 ⇒ v0.3.29 [e6f89c97] ↑ LoggingExtras v1.0.3 ⇒ v1.2.0 [c2834f40] + MLCore v1.0.0 [add582a8] ↑ MLJ v0.20.6 ⇒ v0.22.0 [a7f614a8] ↑ MLJBase v1.6.0 ⇒ v1.12.1 [50ed68f4] ↑ MLJEnsembles v0.4.3 ⇒ v0.4.4 [614be32b] ↑ MLJIteration v0.6.2 ⇒ v0.6.4 [e80e1ace] ↑ MLJModelInterface v1.11.0 ⇒ v1.12.1 [d491faf4] ↑ MLJModels v0.17.2 ⇒ v0.18.3 [5fbdd59d] + MLJNonnegativeMatrixFactorization v0.1.1 [697918b4] ↑ MLJTestIntegration v0.5.2 ⇒ v0.5.4 [72560011] ↑ MLJTestInterface v0.2.6 ⇒ v0.2.9 [23777cdb] + MLJTransforms v0.1.4 [03970b2e] ↑ MLJTuning v0.8.7 ⇒ v0.8.9 [f1d291b0] ↑ MLUtils v0.4.4 ⇒ v0.4.8 [1914dd2f] ↑ MacroTools v0.5.13 ⇒ v0.5.16 [128add7d] ↑ MicroCollections v0.1.4 ⇒ v0.2.0 [6f286f6a] + MultivariateStats v0.10.3 [6ef6ca0d] ↑ NMF v1.0.2 ⇒ v1.0.3 [872c559c] ↑ NNlib v0.9.19 ⇒ v0.9.32 [77ba4419] - NaNMath v1.0.2 [b8a86587] ↑ NearestNeighbors v0.4.18 ⇒ v0.4.26 [b7351bd1] ↑ NonNegLeastSquares v0.4.0 ⇒ v0.4.1 [8b6db2d4] ↑ OpenML v0.3.1 ⇒ v0.3.3 [4d8831e6] ↑ OpenSSL v1.4.3 ⇒ v1.6.1 [bac558e1] ↑ OrderedCollections v1.6.3 ⇒ v1.8.1 [90014a1f] ↑ PDMats v0.11.31 ⇒ v0.11.37 [69de0a69] ↑ Parsers v2.8.1 ⇒ v2.8.3 [aea7be01] ↑ PrecompileTools v1.2.1 ⇒ v1.3.3 [21216c6a] ↑ Preferences v1.4.3 ⇒ v1.5.1 [08abe8d2] ↑ PrettyTables v2.3.2 ⇒ v3.1.2 [92933f4c] ↑ ProgressMeter v1.10.0 ⇒ v1.11.0 [43287f4e] ↑ PtrArrays v1.2.0 ⇒ v1.3.0 [1fd47b50] ↑ QuadGK v2.9.4 ⇒ v2.11.2 [ae029012] ↑ Requires v1.3.0 ⇒ v1.3.1 [79098fc4] ↑ Rmath v0.7.1 ⇒ v0.9.0 [321657f4] ↑ ScientificTypes v3.0.2 ⇒ v3.1.2 [7e506255] + ScopedValues v1.5.0 [6c6a2e73] ↑ Scratch v1.2.1 ⇒ v1.3.0 [91c51154] + SentinelArrays v1.4.9 [efcf1570] ↑ Setfield v1.1.1 ⇒ v1.1.2 [777ac1f9] ↑ SimpleBufferStream v1.1.0 ⇒ v1.2.0 [699a6c99] ↑ SimpleTraits v0.9.4 ⇒ v0.9.5 [a2af1166] ↑ SortingAlgorithms v1.2.1 ⇒ v1.2.2 [276daf66] ↑ SpecialFunctions v2.4.0 ⇒ v2.6.1 [860ef19b] ↑ StableRNGs v1.0.2 ⇒ v1.0.4 [90137ffa] ↑ StaticArrays v1.9.7 ⇒ v1.9.16 [1e83bf80] ↑ StaticArraysCore v1.4.3 ⇒ v1.4.4 [a19d573c] ↑ StatisticalMeasures v0.1.6 ⇒ v0.3.3 [c062fc1d] ↑ StatisticalMeasuresBase v0.1.1 ⇒ v0.1.3 [64bff920] ↑ StatisticalTraits v3.4.0 ⇒ v3.5.0 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [82ae8749] ↑ StatsAPI v1.7.0 ⇒ v1.8.0 [2913bbd2] ↑ StatsBase v0.34.3 ⇒ v0.34.9 [4c63d2b9] ↑ StatsFuns v1.3.1 ⇒ v1.5.2 [892a3eda] ↑ StringManipulation v0.3.4 ⇒ v0.4.2 [ab02a1b2] + TableOperations v1.2.0 [bd369af6] ↑ Tables v1.11.1 ⇒ v1.12.1 [3bb67fe8] ↑ TranscodingStreams v0.11.0 ⇒ v0.11.3 [28d57a85] ↑ Transducers v0.4.80 ⇒ v0.4.85 [5c2747f8] ↑ URIs v1.5.1 ⇒ v1.6.1 [013be700] ↑ UnsafeAtomics v0.2.1 ⇒ v0.3.0 [d80eeb9a] - UnsafeAtomicsLLVM v0.1.5 ⌅ [68821587] + Arpack_jll v3.5.2+0 [dad2f222] - LLVMExtra_jll v0.0.30+0 [c8ffd9c3] ↑ MbedTLS_jll v2.28.2+1 ⇒ v2.28.1010+0 [efe28fd5] ↑ OpenSpecFun_jll v0.5.5+0 ⇒ v0.5.6+0 [f50d1b31] ↑ Rmath_jll v0.4.2+0 ⇒ v0.5.1+0 [0dad84c5] ↑ ArgTools v1.1.1 ⇒ v1.1.2 [56f22d72] ~ Artifacts ⇒ v1.11.0 [2a0f44e3] ~ Base64 ⇒ v1.11.0 [ade2ca70] ~ Dates ⇒ v1.11.0 [8ba89e20] ~ Distributed ⇒ v1.11.0 [f43a241f] ↑ Downloads v1.6.0 ⇒ v1.7.0 [7b1f6079] ~ FileWatching ⇒ v1.11.0 [9fa8497b] ~ Future ⇒ v1.11.0 [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] - LazyArtifacts [b27032c2] ↑ LibCURL v0.6.4 ⇒ v1.0.0 [76f85450] ~ LibGit2 ⇒ v1.11.0 [8f399da3] ~ Libdl ⇒ v1.11.0 [37e2e46d] ~ LinearAlgebra ⇒ v1.13.0 [56ddb016] ~ Logging ⇒ v1.11.0 [d6f4376e] ~ Markdown ⇒ v1.11.0 [a63ad114] ~ Mmap ⇒ v1.11.0 [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0 [44cfe95a] ↑ Pkg v1.10.0 ⇒ v1.14.0 [de0858da] ~ Printf ⇒ v1.11.0 [3fa0cd96] ~ REPL ⇒ v1.11.0 [9a3f8284] ~ Random ⇒ v1.11.0 [ea8e919c] ↑ SHA v0.7.0 ⇒ v1.0.0 [9e88b42a] ~ Serialization ⇒ v1.11.0 [6462fe0b] ~ Sockets ⇒ v1.11.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.13.0 [f489334b] + StyledStrings v1.13.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] ~ UUIDs ⇒ v1.11.0 [4ec0a83e] ~ Unicode ⇒ v1.11.0 [e66e0078] ↑ CompilerSupportLibraries_jll v1.1.1+0 ⇒ v1.3.0+1 [deac9b47] ↑ LibCURL_jll v8.4.0+0 ⇒ v8.17.0+0 [e37daf67] ↑ LibGit2_jll v1.6.4+0 ⇒ v1.9.2+0 [29816b5a] ↑ LibSSH2_jll v1.11.0+1 ⇒ v1.11.3+1 [14a3606d] ↑ MozillaCACerts_jll v2023.1.10 ⇒ v2025.12.2 [4536629a] ↑ OpenBLAS_jll v0.3.23+4 ⇒ v0.3.29+0 [05823500] ↑ OpenLibm_jll v0.8.1+2 ⇒ v0.8.7+0 [458c3c95] ↑ OpenSSL_jll v3.0.14+0 ⇒ v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] ↑ SuiteSparse_jll v7.2.1+1 ⇒ v7.10.1+0 [83775a58] ↑ Zlib_jll v1.2.13+1 ⇒ v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] ↑ libblastrampoline_jll v5.8.0+1 ⇒ v5.15.0+0 [8e850ede] ↑ nghttp2_jll v1.52.0+1 ⇒ v1.68.0+1 [3f19e933] ↑ p7zip_jll v17.4.0+2 ⇒ v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_mdmpeZ/Project.toml` [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [a7f614a8] MLJBase v1.12.1 [5fbdd59d] MLJNonnegativeMatrixFactorization v0.1.1 [697918b4] MLJTestIntegration v0.5.4 [6ef6ca0d] NMF v1.0.3 [860ef19b] StableRNGs v1.0.4 [bd369af6] Tables v1.12.1 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_mdmpeZ/Manifest.toml` [da404889] ARFFFiles v1.6.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [7d9fca2a] Arpack v0.5.4 [a9b6321e] Atomix v1.1.2 [198e06fe] BangBang v0.4.6 [9718e550] Baselet v0.1.1 [50ba71b6] BitBasis v0.9.10 [d1d4a3ce] BitFlags v0.1.9 [324d7699] CategoricalArrays v1.0.2 [af321ab8] CategoricalDistributions v0.2.1 [d360d2e6] ChainRulesCore v1.26.0 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [861a8166] Combinatorics v1.1.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [ed09eef8] ComputationalResources v0.3.2 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [6add18c4] ContextVariablesX v0.1.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [792122b4] EarlyStopping v0.3.0 [460bff9d] ExceptionUnwrapping v0.1.11 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [33837fe5] FeatureSelection v0.2.4 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [53c48c17] FixedPointNumbers v0.8.5 [46192b85] GPUArraysCore v0.2.0 [cd3eb016] HTTP v1.10.19 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [22cec73e] InitialValues v0.3.1 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [b3c1a2ee] IterationControl v0.5.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [b14d175d] JuliaVariables v0.2.4 [63c18a36] KernelAbstractions v0.9.39 [b964fa9f] LaTeXStrings v1.4.0 [a5e1c1ea] LatinHypercubeSampling v1.9.0 [92ad9a40] LearnAPI v2.0.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [c2834f40] MLCore v1.0.0 ⌅ [64a0f543] MLFlowClient v0.5.1 [add582a8] MLJ v0.22.0 [45f359ea] MLJBalancing v0.1.5 [a7f614a8] MLJBase v1.12.1 [50ed68f4] MLJEnsembles v0.4.4 [7b7b8358] MLJFlow v0.5.0 [614be32b] MLJIteration v0.6.4 [e80e1ace] MLJModelInterface v1.12.1 [d491faf4] MLJModels v0.18.3 [5fbdd59d] MLJNonnegativeMatrixFactorization v0.1.1 [697918b4] MLJTestIntegration v0.5.4 [72560011] MLJTestInterface v0.2.9 [23777cdb] MLJTransforms v0.1.4 [03970b2e] MLJTuning v0.8.9 [d8e11817] MLStyle v0.4.17 [f1d291b0] MLUtils v0.4.8 [1914dd2f] MacroTools v0.5.16 [739be429] MbedTLS v1.1.9 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [6f286f6a] MultivariateStats v0.10.3 [6ef6ca0d] NMF v1.0.3 [872c559c] NNlib v0.9.32 [71a1bf82] NameResolution v0.1.5 [636a865e] NearestNeighborModels v0.2.3 [b8a86587] NearestNeighbors v0.4.26 [b7351bd1] NonNegLeastSquares v0.4.1 [8b6db2d4] OpenML v0.3.3 [4d8831e6] OpenSSL v1.6.1 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [8162dcfd] PrettyPrint v0.2.0 [54e16d92] PrettyPrinting v0.4.2 [08abe8d2] PrettyTables v3.1.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [0448d7d9] RandomizedLinAlg v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [321657f4] ScientificTypes v3.1.2 [30f210dd] ScientificTypesBase v3.0.0 [7e506255] ScopedValues v1.5.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.9 [efcf1570] Setfield v1.1.2 [605ecd9f] ShowCases v0.1.0 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.5 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [171d559e] SplittablesBase v0.1.15 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [a19d573c] StatisticalMeasures v0.3.3 [c062fc1d] StatisticalMeasuresBase v0.1.3 [64bff920] StatisticalTraits v3.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.9 [4c63d2b9] StatsFuns v1.5.2 [892a3eda] StringManipulation v0.4.2 [ab02a1b2] TableOperations v1.2.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [28d57a85] Transducers v0.4.85 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [013be700] UnsafeAtomics v0.3.0 ⌅ [68821587] Arpack_jll v3.5.2+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time cost-functions.jl | 3 3 8.4s nmf-base.jl: Test Failed at /home/pkgeval/.julia/packages/MLJNonnegativeMatrixFactorization/DgPhE/test/runtests.jl:118 Expression: isapprox(cost, cost2, rtol = 0.001) Evaluated: isapprox(1.540176310945579e-5, 1.868407876703254e-5; rtol = 0.001) Stacktrace: [1] top-level scope @ ~/.julia/packages/MLJNonnegativeMatrixFactorization/DgPhE/test/runtests.jl:46 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/MLJNonnegativeMatrixFactorization/DgPhE/test/runtests.jl:118 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] Test Summary: | Pass Fail Total Time nmf-base.jl | 12 1 13 1m00.8s RNG of the outermost testset: Xoshiro(0x59a08a32bc333ee4, 0x45ee41058bcd30f4, 0x702b58f7116a9be1, 0xdd6f5f39b84603f5, 0x6a4fa4aac099f8d8) ERROR: LoadError: Some tests did not pass: 12 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MLJNonnegativeMatrixFactorization/DgPhE/test/runtests.jl:45 Testing failed after 878.65s ERROR: LoadError: Package MLJNonnegativeMatrixFactorization errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3067 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2916 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval failed after 953.19s: package has test failures