Package evaluation to test StomataModels on Julia 1.14.0-DEV.1420 (3d611fddcf*) started at 2025-12-28T20:56:42.124


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 10.98s


################################################################################
# Installation
#

Installing StomataModels...
   Resolving package versions...
   Installed Bzip2_jll ─────────────────── v1.0.9+0
   Installed NetCDF_jll ────────────────── v401.900.300+0
   Installed InlineStrings ─────────────── v1.4.5
   Installed DiskArrays ────────────────── v0.4.18
   Installed DataStructures ────────────── v0.18.22
   Installed WaterPhysics ──────────────── v0.1.5
   Installed NetcdfIO ──────────────────── v0.2.12
   Installed ClimaCache ────────────────── v1.1.8
   Installed Lz4_jll ───────────────────── v1.10.1+0
   Installed libaec_jll ────────────────── v1.1.4+0
   Installed MPICH_jll ─────────────────── v4.3.2+0
   Installed CFTime ────────────────────── v0.2.5
   Installed ConstructionBase ──────────── v1.6.0
   Installed OrderedCollections ────────── v1.8.1
   Installed StatsBase ─────────────────── v0.33.21
   Installed ConstrainedRootSolvers ────── v0.1.5
   Installed MicrosoftMPI_jll ──────────── v10.1.4+3
   Installed Compat ────────────────────── v4.18.1
   Installed DataAPI ───────────────────── v1.16.0
   Installed IteratorInterfaceExtensions ─ v1.0.0
   Installed InvertedIndices ───────────── v1.3.1
   Installed Statistics ────────────────── v1.11.1
   Installed StomataModels ─────────────── v0.3.2
   Installed Xorg_libpciaccess_jll ─────── v0.18.1+0
   Installed PrecompileTools ───────────── v1.3.3
   Installed DataValueInterfaces ───────── v1.0.0
   Installed StatsAPI ──────────────────── v1.8.0
   Installed OffsetArrays ──────────────── v1.17.0
   Installed Blosc_jll ─────────────────── v1.21.7+0
   Installed SentinelArrays ────────────── v1.4.9
   Installed IrrationalConstants ───────── v0.2.6
   Installed StringManipulation ────────── v0.4.2
   Installed libzip_jll ────────────────── v1.11.3+0
   Installed HDF5_jll ──────────────────── v1.14.6+0
   Installed OpenMPI_jll ───────────────── v5.0.9+0
   Installed SoilHydraulics ────────────── v0.2.4
   Installed LogExpFunctions ───────────── v0.3.29
   Installed EmeraldConstants ──────────── v0.1.0
   Installed Hwloc_jll ─────────────────── v2.12.2+0
   Installed Tables ────────────────────── v1.12.1
   Installed XML2_jll ──────────────────── v2.13.9+0
   Installed Reexport ──────────────────── v1.2.2
   Installed PrettyTables ──────────────── v3.1.2
   Installed PlantHydraulics ───────────── v0.4.3
   Installed Missings ──────────────────── v1.2.0
   Installed MPIPreferences ────────────── v0.1.11
   Installed Preferences ───────────────── v1.5.1
   Installed PooledArrays ──────────────── v1.4.3
   Installed CommonDataModel ───────────── v0.4.2
   Installed JLLWrappers ───────────────── v1.7.1
   Installed Libiconv_jll ──────────────── v1.18.0+0
   Installed LaTeXStrings ──────────────── v1.4.0
   Installed TableTraits ───────────────── v1.0.1
   Installed XZ_jll ────────────────────── v5.8.1+0
   Installed LRUCache ──────────────────── v1.6.2
   Installed Crayons ───────────────────── v4.1.1
   Installed MPItrampoline_jll ─────────── v5.5.4+0
   Installed UnPack ────────────────────── v1.0.2
   Installed SortingAlgorithms ─────────── v1.2.2
   Installed Photosynthesis ────────────── v0.4.6
   Installed DataFrames ────────────────── v1.8.1
   Installed DocStringExtensions ───────── v0.9.5
   Installed PkgUtility ────────────────── v0.2.1
  Installing 13 artifacts
   Installed artifact Xorg_libpciaccess 24.8 KiB
   Installed artifact Blosc             44.2 KiB
   Installed artifact libzip            177.6 KiB
   Installed artifact Lz4               239.7 KiB
   Installed artifact Bzip2             503.5 KiB
   Installed artifact libaec            49.6 KiB
   Installed artifact NetCDF            936.0 KiB
   Installed artifact MPICH             3.3 MiB
   Installed artifact Libiconv          1.9 MiB
   Installed artifact XZ                1.5 MiB
   Installed artifact Hwloc             3.5 MiB
   Installed artifact XML2              2.5 MiB
   Installed artifact HDF5              5.7 MiB
    Updating `~/.julia/environments/v1.14/Project.toml`
  [5fa394f2] + StomataModels v0.3.2
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [179af706] + CFTime v0.2.5
  [781d2db2] + ClimaCache v1.1.8
  [1fbeeb36] + CommonDataModel v0.4.2
  [34da2185] + Compat v4.18.1
  [7e2492bd] + ConstrainedRootSolvers v0.1.5
  [187b0558] + ConstructionBase v1.6.0
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.8.1
⌅ [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [3c3547ce] + DiskArrays v0.4.18
  [ffbed154] + DocStringExtensions v0.9.5
  [f1e47f7f] + EmeraldConstants v0.1.0
  [842dd82b] + InlineStrings v1.4.5
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.6
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.1
  [8ac3fa9e] + LRUCache v1.6.2
  [b964fa9f] + LaTeXStrings v1.4.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [3da0fdf6] + MPIPreferences v0.1.11
  [e1d29d7a] + Missings v1.2.0
  [6a36f34d] + NetcdfIO v0.2.12
  [6fe1bfb0] + OffsetArrays v1.17.0
  [bac558e1] + OrderedCollections v1.8.1
  [537ec7c9] + Photosynthesis v0.4.6
⌅ [0d262f2c] + PkgUtility v0.2.1
  [d6acb6ec] + PlantHydraulics v0.4.3
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.1
  [08abe8d2] + PrettyTables v3.1.2
  [189a3867] + Reexport v1.2.2
  [91c51154] + SentinelArrays v1.4.9
  [a476b75e] + SoilHydraulics v0.2.4
  [a2af1166] + SortingAlgorithms v1.2.2
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.8.0
⌅ [2913bbd2] + StatsBase v0.33.21
  [5fa394f2] + StomataModels v0.3.2
  [892a3eda] + StringManipulation v0.4.2
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [3a884ed6] + UnPack v1.0.2
  [20dd5ee6] + WaterPhysics v0.1.5
  [0b7ba130] + Blosc_jll v1.21.7+0
  [6e34b625] + Bzip2_jll v1.0.9+0
⌅ [0234f1f7] + HDF5_jll v1.14.6+0
  [e33a78d0] + Hwloc_jll v2.12.2+0
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [5ced341a] + Lz4_jll v1.10.1+0
  [7cb0a576] + MPICH_jll v4.3.2+0
  [f1f71cc9] + MPItrampoline_jll v5.5.4+0
  [9237b28f] + MicrosoftMPI_jll v10.1.4+3
  [7243133f] + NetCDF_jll v401.900.300+0
  [fe0851c0] + OpenMPI_jll v5.0.9+0
⌅ [02c8fc9c] + XML2_jll v2.13.9+0
  [ffd25f8a] + XZ_jll v5.8.1+0
  [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0
  [477f73a3] + libaec_jll v1.1.4+0
  [337d8026] + libzip_jll v1.11.3+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v1.0.0
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.14.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.13.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.17.0+0
  [e37daf67] + LibGit2_jll v1.9.2+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.12.2
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [efcefdf7] + PCRE2_jll v10.47.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.68.0+1
  [3f19e933] + p7zip_jll v17.7.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 16.93s


################################################################################
# Precompilation
#

ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:10
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:585
in expression starting at /PkgEval.jl/scripts/precompile.jl:6

caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:7
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:585

Precompilation failed after 13.56s



################################################################################
# Testing
#

     Testing StomataModels
      Status `/tmp/jl_VK4LhN/Project.toml`
  [781d2db2] ClimaCache v1.1.8
  [f1e47f7f] EmeraldConstants v0.1.0
  [537ec7c9] Photosynthesis v0.4.6
  [d6acb6ec] PlantHydraulics v0.4.3
  [a476b75e] SoilHydraulics v0.2.4
  [5fa394f2] StomataModels v0.3.2
  [3a884ed6] UnPack v1.0.2
  [20dd5ee6] WaterPhysics v0.1.5
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_VK4LhN/Manifest.toml`
  [179af706] CFTime v0.2.5
  [781d2db2] ClimaCache v1.1.8
  [1fbeeb36] CommonDataModel v0.4.2
  [34da2185] Compat v4.18.1
  [7e2492bd] ConstrainedRootSolvers v0.1.5
  [187b0558] ConstructionBase v1.6.0
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.8.1
⌅ [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
  [3c3547ce] DiskArrays v0.4.18
  [ffbed154] DocStringExtensions v0.9.5
  [f1e47f7f] EmeraldConstants v0.1.0
  [842dd82b] InlineStrings v1.4.5
  [41ab1584] InvertedIndices v1.3.1
  [92d709cd] IrrationalConstants v0.2.6
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.1
  [8ac3fa9e] LRUCache v1.6.2
  [b964fa9f] LaTeXStrings v1.4.0
  [2ab3a3ac] LogExpFunctions v0.3.29
  [3da0fdf6] MPIPreferences v0.1.11
  [e1d29d7a] Missings v1.2.0
  [6a36f34d] NetcdfIO v0.2.12
  [6fe1bfb0] OffsetArrays v1.17.0
  [bac558e1] OrderedCollections v1.8.1
  [537ec7c9] Photosynthesis v0.4.6
⌅ [0d262f2c] PkgUtility v0.2.1
  [d6acb6ec] PlantHydraulics v0.4.3
  [2dfb63ee] PooledArrays v1.4.3
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.1
  [08abe8d2] PrettyTables v3.1.2
  [189a3867] Reexport v1.2.2
  [91c51154] SentinelArrays v1.4.9
  [a476b75e] SoilHydraulics v0.2.4
  [a2af1166] SortingAlgorithms v1.2.2
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.8.0
⌅ [2913bbd2] StatsBase v0.33.21
  [5fa394f2] StomataModels v0.3.2
  [892a3eda] StringManipulation v0.4.2
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
  [3a884ed6] UnPack v1.0.2
  [20dd5ee6] WaterPhysics v0.1.5
  [0b7ba130] Blosc_jll v1.21.7+0
  [6e34b625] Bzip2_jll v1.0.9+0
⌅ [0234f1f7] HDF5_jll v1.14.6+0
  [e33a78d0] Hwloc_jll v2.12.2+0
  [94ce4f54] Libiconv_jll v1.18.0+0
  [5ced341a] Lz4_jll v1.10.1+0
  [7cb0a576] MPICH_jll v4.3.2+0
  [f1f71cc9] MPItrampoline_jll v5.5.4+0
  [9237b28f] MicrosoftMPI_jll v10.1.4+3
  [7243133f] NetCDF_jll v401.900.300+0
  [fe0851c0] OpenMPI_jll v5.0.9+0
⌅ [02c8fc9c] XML2_jll v2.13.9+0
  [ffd25f8a] XZ_jll v5.8.1+0
  [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0
  [477f73a3] libaec_jll v1.1.4+0
  [337d8026] libzip_jll v1.11.3+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v1.0.0
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.14.0
  [de0858da] Printf v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.13.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.17.0+0
  [e37daf67] LibGit2_jll v1.9.2+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.12.2
  [4536629a] OpenBLAS_jll v0.3.29+0
  [458c3c95] OpenSSL_jll v3.5.4+0
  [efcefdf7] PCRE2_jll v10.47.0+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [83775a58] Zlib_jll v1.3.1+2
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850b90] libblastrampoline_jll v5.15.0+0
  [8e850ede] nghttp2_jll v1.68.0+1
  [3f19e933] p7zip_jll v17.7.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
 Downloading artifact: land_model_spectrum_V2

  1 dependency had output during precompilation:
┌ ClimaCache
│  [Output was shown above]
└  
Test Summary:            | Pass  Total   Time
StomataModels Test       |  104    104  33.3s
  Conductance Limits     |    6      6   3.0s
  ∂g∂t                   |   72     72   7.4s
  ∂gₙ∂t                  |    6      6   0.5s
  Prognostic Conductance |   20     20  22.4s
     Testing StomataModels tests passed 

Testing completed after 387.11s

PkgEval succeeded after 572.0s