Package evaluation to test DiffusionMap on Julia 1.14.0-DEV.1414 (f2608a495e*) started at 2025-12-28T14:47:18.278 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 10.56s ################################################################################ # Installation # Installing DiffusionMap... Resolving package versions... Installed DataAPI ───────────── v1.16.0 Installed Missings ──────────── v1.2.0 Installed StatsAPI ──────────── v1.8.0 Installed Compat ────────────── v4.18.1 Installed Statistics ────────── v1.11.1 Installed LogExpFunctions ───── v0.3.29 Installed DataStructures ────── v0.18.22 Installed IrrationalConstants ─ v0.2.6 Installed SortingAlgorithms ─── v1.2.2 Installed DocStringExtensions ─ v0.9.5 Installed StatsBase ─────────── v0.33.21 Installed OrderedCollections ── v1.8.1 Installed DiffusionMap ──────── v0.1.4 Updating `~/.julia/environments/v1.14/Project.toml` [809424d5] + DiffusionMap v0.1.4 Updating `~/.julia/environments/v1.14/Manifest.toml` [34da2185] + Compat v4.18.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [809424d5] + DiffusionMap v0.1.4 [ffbed154] + DocStringExtensions v0.9.5 [92d709cd] + IrrationalConstants v0.2.6 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [a2af1166] + SortingAlgorithms v1.2.2 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 1.82s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 Precompilation failed after 12.34s ################################################################################ # Testing # Testing DiffusionMap Status `/tmp/jl_n4RQ0M/Project.toml` [cbdf2221] AlgebraOfGraphics v0.12.0 [336ed68f] CSV v0.10.15 [13f3f980] CairoMakie v0.15.8 [35d6a980] ColorSchemes v3.31.0 [809424d5] DiffusionMap v0.1.4 [b5f81e59] IOCapture v1.0.0 [033835bb] JLD2 v0.6.3 [06eb3307] ManifoldLearning v0.9.0 [7f904dfe] PlutoUI v0.7.77 [10745b16] Statistics v1.11.1 ⌅ [2913bbd2] StatsBase v0.33.21 [b77e0a4c] InteractiveUtils v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [d6f4376e] Markdown v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_n4RQ0M/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [6e696c72] AbstractPlutoDingetjes v1.3.2 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.4.0 [35492f91] AdaptivePredicates v1.2.0 [cbdf2221] AlgebraOfGraphics v0.12.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [ec485272] ArnoldiMethod v0.4.0 [7d9fca2a] Arpack v0.5.4 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [18cc8868] BaseDirs v1.3.2 [fa961155] CEnum v0.5.0 [96374032] CRlibm v1.0.2 [336ed68f] CSV v0.10.15 [159f3aea] Cairo v1.1.1 [13f3f980] CairoMakie v0.15.8 [d360d2e6] ChainRulesCore v1.26.0 [0b6fb165] ChunkCodecCore v1.0.1 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.2 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.1.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [95dc2771] ComputePipeline v0.1.6 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [927a84f5] DelaunayTriangulation v1.6.6 [85a47980] Dictionaries v0.4.6 [809424d5] DiffusionMap v0.1.4 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [429591f6] ExactPredicates v2.2.9 [411431e0] Extents v0.1.6 [7a1cc6ca] FFTW v1.10.0 [5789e2e9] FileIO v1.17.1 [8fc22ac5] FilePaths v0.9.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.8 [38e38edf] GLM v1.9.0 [68eda718] GeoFormatTypes v0.4.5 [cf35fbd7] GeoInterface v1.6.0 [5c1252a2] GeometryBasics v0.5.10 [a2bd30eb] Graphics v1.1.3 ⌃ [86223c79] Graphs v1.13.1 [3955a311] GridLayoutBase v0.11.2 [42e2da0e] Grisu v1.0.2 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [47d2ed2b] Hyperscript v0.0.5 [ac1192a8] HypertextLiteral v0.9.5 [b5f81e59] IOCapture v1.0.0 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [313cdc1a] Indexing v1.1.1 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.5 [a98d9a8b] Interpolations v0.16.2 [d1acc4aa] IntervalArithmetic v1.0.2 [8197267c] IntervalSets v0.7.13 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.6.3 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.3.0 [b835a17e] JpegTurbo v0.1.6 [5ab0869b] KernelDensity v0.6.10 [b964fa9f] LaTeXStrings v1.4.0 [8cdb02fc] LazyModules v0.3.1 [4345ca2d] Loess v0.6.5 [2ab3a3ac] LogExpFunctions v0.3.29 [6c6e2e6c] MIMEs v1.1.0 [1914dd2f] MacroTools v0.5.16 [ee78f7c6] Makie v0.24.8 [06eb3307] ManifoldLearning v0.9.0 [dbb5928d] MappedArrays v0.4.3 [0a4f8689] MathTeXEngine v0.6.7 [e1d29d7a] Missings v1.2.0 [e94cdb99] MosaicViews v0.3.4 ⌅ [6f286f6a] MultivariateStats v0.9.0 [77ba4419] NaNMath v1.1.3 [c020b1a1] NaturalSort v1.0.0 [f09324ee] Netpbm v1.1.1 [510215fc] Observables v0.5.5 [6fe1bfb0] OffsetArrays v1.17.0 [52e1d378] OpenEXR v0.3.3 [bac558e1] OrderedCollections v1.8.1 ⌃ [90014a1f] PDMats v0.11.35 [f57f5aa1] PNGFiles v0.4.4 [19eb6ba3] Packing v0.5.1 [5432bcbf] PaddedViews v0.5.12 [69de0a69] Parsers v2.8.3 [eebad327] PkgVersion v0.3.3 [995b91a9] PlotUtils v1.4.4 [7f904dfe] PlutoUI v0.7.77 [647866c9] PolygonOps v0.1.2 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [4b34888f] QOI v1.0.2 [1fd47b50] QuadGK v2.11.2 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [5eaf0fd0] RoundingEmulator v0.2.1 [fdea26ae] SIMD v3.7.2 [7e506255] ScopedValues v1.5.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.9 [65257c39] ShaderAbstractions v0.5.0 [1277b4bf] ShiftedArrays v2.0.0 [992d4aef] Showoff v1.0.3 [73760f76] SignedDistanceFields v0.4.0 [699a6c99] SimpleTraits v0.9.5 [45858cf5] Sixel v0.1.5 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [860ef19b] StableRNGs v1.0.4 [cae243ae] StackViews v0.1.2 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.7 [09ab397b] StructArrays v0.7.2 [ec057cc2] StructUtils v2.6.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [731e570b] TiffImages v0.11.6 [3bb67fe8] TranscodingStreams v0.11.3 [410a4b4d] Tricks v0.1.13 [981d1d27] TriplotBase v0.1.0 [5c2747f8] URIs v1.6.1 [1cfade01] UnicodeFun v0.4.1 [1986cc42] Unitful v1.27.0 [ea10d353] WeakRefStrings v1.4.2 [e3aaa7dc] WebP v0.1.3 [efce3f68] WoodburyMatrices v1.0.0 [76eceee3] WorkerUtilities v1.6.1 ⌅ [68821587] Arpack_jll v3.5.2+0 [6e34b625] Bzip2_jll v1.0.9+0 [4e9b3aee] CRlibm_jll v1.0.1+0 [83423d85] Cairo_jll v1.18.5+0 [5ae413db] EarCut_jll v2.2.4+0 [2e619515] Expat_jll v2.7.3+0 [b22a6f82] FFMPEG_jll v8.0.1+0 [f5851436] FFTW_jll v3.3.11+0 [a3f928ae] Fontconfig_jll v2.17.1+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [b0724c58] GettextRuntime_jll v0.22.4+0 [59f7168a] Giflib_jll v5.2.3+0 [7746bdde] Glib_jll v2.86.2+0 [3b182d85] Graphite2_jll v1.3.15+0 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [905a6f67] Imath_jll v3.1.11+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [aacddb02] JpegTurbo_jll v3.1.4+0 [c1c5ebd0] LAME_jll v3.100.3+0 [88015f11] LERC_jll v4.0.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 ⌅ [e9f186c6] Libffi_jll v3.4.7+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.2+0 [89763e89] Libtiff_jll v4.7.2+0 [38a345b3] Libuuid_jll v2.41.2+0 [856f044c] MKL_jll v2025.2.0+0 [e7412a2a] Ogg_jll v1.3.6+0 [6cdc7f73] OpenBLASConsistentFPCSR_jll v0.3.29+0 [18a262bb] OpenEXR_jll v3.2.4+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [91d4177d] Opus_jll v1.5.2+0 [36c8627f] Pango_jll v1.57.0+0 ⌅ [30392449] Pixman_jll v0.44.2+0 [f50d1b31] Rmath_jll v0.5.1+0 [ffd25f8a] XZ_jll v5.8.1+0 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [9a68df92] isoband_jll v0.2.3+0 [a4ae2306] libaom_jll v3.13.1+0 [0ac62f75] libass_jll v0.17.4+0 [f638f0a6] libfdk_aac_jll v2.0.4+0 [b53b4c65] libpng_jll v1.6.53+0 [075b6546] libsixel_jll v1.10.5+0 [f27f6e37] libvorbis_jll v1.3.8+0 [c5f90fcd] libwebp_jll v1.6.0+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [1270edf5] x264_jll v10164.0.1+0 [dfaa095f] x265_jll v4.1.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [8bf52ea8] CRC32c v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ________ __ _____ _____ __ _____ \______ \ |__|_/ ____\_/ ____\__ __ ______|__| ____ ____ / \ _____ ______ | | \ | |\ __\ \ __\| | \/ ___/| | / _ \ / \ / \ / \ \__ \ \____ \ | ` \| | | | | | | | /\___ \ | |( <_> )| | \/ Y \ / __ \_| |_> > /_______ /|__| |__| |__| |____//____ >|__| \____/ |___| /\____|__ /(____ /| __/ \/ \/ \/ \/ \/ |__| Test Summary: | Pass Total Time normalize_to_stochastic_matrix! | 2 2 4.3s Test Summary: | Pass Total Time diffusion_map | 5 5 9.7s matrix P | 4 4 7.1s matrix X and kernel | 1 1 2.6s Test Summary: | Pass Total Time pca | 1 1 0.8s [ Info: Running example notebook (may take a minute or so) ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_50734.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2285 [inlined] start_task at /source/src/task.c:1272 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007932cda64010 Total snapshots: 383. Utilization: 0% ╎383 @Base/task.jl:1168 wait_forever() 382╎ 383 @Base/task.jl:1246 wait() Test Summary: | Pass ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Total Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000074b36e3fc010 Total snapshots: 179. Utilization: 100% ╎179 @Base/client.jl:577 _start() ╎ 179 @Base/client.jl:310 exec_options(opts::Base.JLOptions) ╎ 179 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ 179 @Base/Base.jl:311 (::Base.IncludeInto)(fname::String) ╎ 179 @Base/Base.jl:310 include(mapexpr::Function, mod::Module, _path::St… ╎ 179 @Base/loading.jl:3184 _include(mapexpr::Function, mod::Module, _pa… ╎ ╎ 179 @Base/loading.jl:3124 include_string(mapexpr::typeof(identity), m… ╎ ╎ 179 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 179 @IOCapture/…pture.jl:100 capture(f::Function) ╎ ╎ 179 @IOCapture/…pture.jl:167 capture(f::Main.Test_DiffusionMap.var… ╎ ╎ 179 @Base/…ng/logging.jl:653 with_logger(f::Function, logger::Bas… ╎ ╎ ╎ 179 @Base/…g/logging.jl:542 with_logstate(f::IOCapture.var"#12#1… ╎ ╎ ╎ 179 @IOCapture/…ture.jl:170 (::IOCapture.var"#12#13"{Type{Any},… ╎ ╎ ╎ 179 …/test/runtests.jl:56 #8 ╎ ╎ ╎ 179 @Base/Base.jl:311 IncludeInto ╎ ╎ ╎ 179 @Base/Base.jl:310 include(mapexpr::Function, mod::Module… ╎ ╎ ╎ ╎ 179 @Base/loading.jl:3184 _include(mapexpr::Function, mod::… ╎ ╎ ╎ ╎ 179 @Base/loading.jl:3124 include_string(mapexpr::typeof(i… ╎ ╎ ╎ ╎ 179 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ ╎ ╎ 179 @DiffusionMap/…l:69 viz_graph(X::Matrix{Float64}, ke… ╎ ╎ ╎ ╎ 179 @Makie/…cipes.jl:532 kwcall(::@NamedTuple{linewidth… ╎ ╎ ╎ ╎ ╎ 179 @Makie/…ipes.jl:534 lines!(::Vector{Float64}, ::Va… ╎ ╎ ╎ ╎ ╎ 3 @Makie/…ting.jl:403 _create_plot!(::Function, ::D… ╎ ╎ ╎ ╎ ╎ 1 @Makie/…ots.jl:769 (Makie.Lines)(user_args::Tupl… ╎ ╎ ╎ ╎ ╎ 1 @Makie/…ots.jl:381 register_arguments! ╎ ╎ ╎ ╎ ╎ 1 @Makie/…ots.jl:403 _register_expand_arguments! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Makie/…ts.jl:410 _register_expand_arguments!… ╎ ╎ ╎ ╎ ╎ ╎ 1 @ComputePipeline/…:1062 map! 1╎ ╎ ╎ ╎ ╎ ╎ 1 @ComputePipeline/…:1063 map!(f::Function, a… ╎ ╎ ╎ ╎ ╎ 1 @Makie/…ots.jl:777 (Makie.Lines)(user_args::Tupl… ╎ ╎ ╎ ╎ ╎ 1 @Makie/…ots.jl:618 add_attributes!(::Type{Makie… ╎ ╎ ╎ ╎ ╎ 1 @Base/dict.jl:117 Dict ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ict.jl:643 dict_with_eltype ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ict.jl:604 grow_to!(dest::Dict{Any, A… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ct.jl:625 grow_to!(dest::Dict{Symbol… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ct.jl:608 grow_to!(dest::Dict{Symbo… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…or.jl:48 iterate 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 none:? (::Makie.var"#add_attributes!##0#… ╎ ╎ ╎ ╎ ╎ 1 @Makie/…ots.jl:778 (Makie.Lines)(user_args::Tupl… ╎ ╎ ╎ ╎ ╎ 1 @Makie/…pes.jl:81 Plot ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:436 getindex 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:676 Array ╎ ╎ ╎ ╎ ╎ 176 @Makie/…ting.jl:407 _create_plot!(::Function, ::D… ╎ ╎ ╎ ╎ ╎ 176 @Makie/…ing.jl:437 plot!(ax::Makie.Axis, plot::M… ╎ ╎ ╎ ╎ ╎ 176 @Makie/…ces.jl:211 plot! ╎ ╎ ╎ ╎ ╎ 105 @Makie/…ots.jl:825 connect_plot!(parent::Makie… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…dim.jl:993 any(f::Function, a:: TimeVector{… 37╎ ╎ ╎ ╎ ╎ ╎ 75 @Makie/…ts.jl:788 plot_cycle_index(scene::Mak… ╎ ╎ ╎ ╎ ╎ ╎ 16 @ComputePipeline/…:563 getindex(computed::Co… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @ComputePipeline/…:643 resolve!(computed::C… ╎ ╎ ╎ ╎ ╎ ╎ 15 @ComputePipeline/…:644 resolve!(computed::C… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @ComputePipeline/…:650 _resolve!(computed:… 5╎ ╎ ╎ ╎ ╎ ╎ 5 @ComputePipeline/…:652 _resolve!(computed:… ╎ ╎ ╎ ╎ ╎ ╎ 9 @ComputePipeline/…:654 _resolve!(computed:… ╎ ╎ ╎ ╎ ╎ ╎ 9 @Base/…ue.jl:59 getindex 9╎ ╎ ╎ ╎ ╎ ╎ ╎ 9 @Base/…er.jl:57 getproperty ╎ ╎ ╎ ╎ ╎ ╎ 4 @Makie/…ts.jl:73 getproperty(plot::Makie.Lin… ╎ ╎ ╎ ╎ ╎ ╎ 4 @ComputePipeline/…:559 getindex ╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/…ct.jl:479 getindex(h::Dict{Symbol, … 4╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/…ls.jl:396 getindex ╎ ╎ ╎ ╎ ╎ ╎ 18 @Makie/…ts.jl:27 haskey(x::Makie.Lines{Tuple… ╎ ╎ ╎ ╎ ╎ ╎ 18 @ComputePipeline/…:542 haskey ╎ ╎ ╎ ╎ ╎ ╎ 18 @Base/…ct.jl:550 haskey 6╎ ╎ ╎ ╎ ╎ ╎ 6 @Base/…ct.jl:239 ht_keyindex ╎ ╎ ╎ ╎ ╎ ╎ 8 @Base/…ct.jl:243 ht_keyindex 8╎ ╎ ╎ ╎ ╎ ╎ ╎ 8 @Base/int.jl:83 < ╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/…ct.jl:250 ht_keyindex 4╎ ╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/…ls.jl:396 getindex 8╎ ╎ ╎ ╎ ╎ ╎ 28 @Makie/…ts.jl:789 plot_cycle_index(scene::Mak… ╎ ╎ ╎ ╎ ╎ ╎ 20 @Base/…dim.jl:993 any 2╎ ╎ ╎ ╎ ╎ ╎ 20 @Base/…im.jl:993 any(f::Function, a::Vector… ╎ ╎ ╎ ╎ ╎ ╎ 18 @Base/…ll.jl:124 _any(f::Makie.var"#plot_c… ╎ ╎ ╎ ╎ ╎ ╎ 18 @Makie/…s.jl:790 (::Makie.var"#plot_cycle… 6╎ ╎ ╎ ╎ ╎ ╎ ╎ 6 @Base/…er.jl:57 getproperty ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ct.jl:479 getindex(h::Dict{Symbol… 2╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ls.jl:396 getindex ╎ ╎ ╎ ╎ ╎ ╎ ╎ 10 @Base/…ct.jl:550 haskey 4╎ ╎ ╎ ╎ ╎ ╎ ╎ 5 @Base/…ct.jl:239 ht_keyindex 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/…ct.jl:243 ht_keyindex 3╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/int.jl:83 < ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ct.jl:250 ht_keyindex 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:396 getindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Makie/…ts.jl:796 plot_cycle_index(scene::Mak… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:1245 iterate ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:1253 _iterate_abstractarray 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:965 getindex ╎ ╎ ╎ ╎ ╎ 1 @Makie/…ots.jl:827 connect_plot!(parent::Makie… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Makie/…es.jl:161 handle_transformation!(plot… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Makie/…on.jl:16 connect! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Makie/…on.jl:20 connect!(parent::Makie.Tra… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Observables/…:361 on ╎ ╎ ╎ ╎ ╎ ╎ 1 @Observables/…:368 on(f::Any, observable:… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Makie/…n.jl:21 (::Makie.var"#1084#1085"… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Observables/…:123 setindex!(observable… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Observables/…:206 notify ╎ ╎ ╎ ╎ ╎ 70 @Makie/…ots.jl:830 connect_plot!(parent::Makie… ╎ ╎ ╎ ╎ ╎ ╎ 70 @Makie/…ts.jl:716 register_camera! ╎ ╎ ╎ ╎ ╎ ╎ 11 @Makie/…ra.jl:353 register_camera!(plot_grap… ╎ ╎ ╎ ╎ ╎ ╎ 11 @Makie/…a.jl:347 _register_common_camera_ma… ╎ ╎ ╎ ╎ ╎ ╎ 11 @ComputePipeline/…:1070 map! ╎ ╎ ╎ ╎ ╎ ╎ 11 @ComputePipeline/…:1071 #map!#68 ╎ ╎ ╎ ╎ ╎ ╎ ╎ 11 @ComputePipeline/…:985 register_computat… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 11 @Base/…im.jl:993 any(f::Function, a::Ve… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 11 @Base/…im.jl:993 any(f::Function, a::V… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 5 @Base/…ll.jl:124 _any(f::ComputePipel… 5╎ ╎ ╎ ╎ ╎ ╎ ╎ 5 @ComputePipeline/…:985 #register_com… 6╎ ╎ ╎ ╎ ╎ ╎ ╎ 6 @Base/…ls.jl:0 _any(f::ComputePipelin… ╎ ╎ ╎ ╎ ╎ ╎ 5 @Makie/…ra.jl:357 register_camera!(plot_grap… ╎ ╎ ╎ ╎ ╎ ╎ 5 @ComputePipeline/…:776 add_input!(attr::Com… ╎ ╎ ╎ ╎ ╎ ╎ 5 @ComputePipeline/…:985 register_computatio… ╎ ╎ ╎ ╎ ╎ ╎ 5 @Base/…im.jl:993 any(f::Function, a::Vect… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 5 @Base/…im.jl:993 any(f::Function, a::Vec… 5╎ ╎ ╎ ╎ ╎ ╎ ╎ 5 @Base/…ls.jl:0 _any(f::ComputePipeline.… ╎ ╎ ╎ ╎ ╎ ╎ 26 @Makie/…ra.jl:360 register_camera!(plot_grap… ╎ ╎ ╎ ╎ ╎ ╎ 26 @ComputePipeline/…:785 add_input!(conversio… ╎ ╎ ╎ ╎ ╎ ╎ 26 @ComputePipeline/…:985 register_computatio… ╎ ╎ ╎ ╎ ╎ ╎ 26 @Base/…im.jl:993 any(f::Function, a::Vect… 2╎ ╎ ╎ ╎ ╎ ╎ ╎ 26 @Base/…im.jl:993 any(f::Function, a::Vec… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 16 @Base/…ll.jl:124 _any(f::ComputePipelin… 16╎ ╎ ╎ ╎ ╎ ╎ ╎ 16 @ComputePipeline/…:985 #register_compu… 8╎ ╎ ╎ ╎ ╎ ╎ ╎ 8 @Base/…ls.jl:0 _any(f::ComputePipeline.… ╎ ╎ ╎ ╎ ╎ ╎ 28 @Makie/…ra.jl:363 register_camera!(plot_grap… ╎ ╎ ╎ ╎ ╎ ╎ 28 @ComputePipeline/…:785 add_input!(conversio… ╎ ╎ ╎ ╎ ╎ ╎ 28 @ComputePipeline/…:985 register_computatio… ╎ ╎ ╎ ╎ ╎ ╎ 28 @Base/…im.jl:993 any(f::Function, a::Vect… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 28 @Base/…im.jl:993 any(f::Function, a::Vec… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 20 @Base/…ll.jl:124 _any(f::ComputePipelin… 20╎ ╎ ╎ ╎ ╎ ╎ ╎ 20 @ComputePipeline/…:985 #register_compu… 8╎ ╎ ╎ ╎ ╎ ╎ ╎ 8 @Base/…ls.jl:0 _any(f::ComputePipeline.… example.jl | 1 1 42m01.6s [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_50734.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2285 [inlined] start_task at /source/src/task.c:1272 unknown function (ip: (nil)) at (unknown file) Allocations: 22706436 (Pool: 22705190; Big: 1246); GC: 37 [295] signal 15: Terminated in expression starting at none:0 jl_typemap_alloc at /source/src/typemap.c:1502 cache_method at /source/src/gf.c:1790 jl_mt_assoc_by_type at /source/src/gf.c:1950 jl_lookup_generic_ at /source/src/gf.c:4283 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2285 [inlined] ijl_atexit_hook at /source/src/init.c:264 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x74b3885f9249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 334446238 (Pool: 334443120; Big: 3118); GC: 90 PkgEval terminated after 2729.87s: test duration exceeded the time limit