Package evaluation to test Scalpels on Julia 1.14.0-DEV.1414 (f2608a495e*) started at 2025-12-25T15:08:06.303 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 9.77s ################################################################################ # Installation # Installing Scalpels... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [17b2198d] + Scalpels v0.1.3 Updating `~/.julia/environments/v1.14/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [ffbed154] + DocStringExtensions v0.9.5 [92d709cd] + IrrationalConstants v0.2.6 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [f27b6e38] + Polynomials v4.1.0 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [43287f4e] + PtrArrays v1.3.0 [3cdcf5f2] + RecipesBase v1.3.4 [ae029012] + Requires v1.3.1 [17b2198d] + Scalpels v0.1.3 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.2 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.9 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [9fa8497b] + Future v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 4.11s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 Precompilation failed after 13.56s ################################################################################ # Testing # Testing Scalpels Status `/tmp/jl_ByPRak/Project.toml` [f27b6e38] Polynomials v4.1.0 [17b2198d] Scalpels v0.1.3 [37e2e46d] LinearAlgebra v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_ByPRak/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [ffbed154] DocStringExtensions v0.9.5 [92d709cd] IrrationalConstants v0.2.6 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.1 [f27b6e38] Polynomials v4.1.0 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [43287f4e] PtrArrays v1.3.0 [3cdcf5f2] RecipesBase v1.3.4 [ae029012] Requires v1.3.1 [17b2198d] Scalpels v0.1.3 [efcf1570] Setfield v1.1.2 [a2af1166] SortingAlgorithms v1.2.2 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.9 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Testing Running tests... ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for Polynomials [f27b6e38-b328-58d1-80ce-0feddd5e7a45] │ exception = Required dependency Base.PkgId(Base.UUID("3cdcf5f2-1ef4-517c-9805-6587b60abb01"), "RecipesBase") failed to load from a cache file. └ @ Base loading.jl:2923 Load code to generate simulated data: Test Failed at /source/usr/share/julia/stdlib/v1.14/Test/src/Test.jl:1074 Expression: contains_warn(read(fname, String), $(Expr(:escape, Test.var"#@test_nowarn##0#@test_nowarn##1"()))) Evaluated: contains_warn("┌ Warning: The call to compilecache failed to create a usable precompiled cache file for Polynomials [f27b6e38-b328-58d1-80ce-0feddd5e7a45]\n│ exception = Required dependency Base.PkgId(Base.UUID(\"3cdcf5f2-1ef4-517c-9805-6587b60abb01\"), \"RecipesBase\") failed to load from a cache file.\n└ @ Base loading.jl:2923\n", Test.var"#@test_nowarn##0#@test_nowarn##1"()) Stacktrace: [1] top-level scope @ ~/.julia/packages/Scalpels/3A8p2/test/runtests.jl:6 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/Scalpels/3A8p2/test/runtests.jl:7 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [5] macro expansion @ ~/.julia/packages/Scalpels/3A8p2/test/runtests.jl:7 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] WARNING: Method definition calc_vertex_of_quadratic_fit(AbstractArray{T1, 1}, AbstractArray{T2, 1}) where {T1<:Real, T2<:Real} in module Main at /home/pkgeval/.julia/packages/Scalpels/3A8p2/examples/generate_sim_data.jl:5 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition est_rv_from_test_ccf(AbstractArray{T1, 1}, AbstractArray{T2, 1}) where {T1<:Real, T2<:Real} in module Main at /home/pkgeval/.julia/packages/Scalpels/3A8p2/examples/generate_sim_data.jl:13 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition H0(Any) in module Main at /home/pkgeval/.julia/packages/Scalpels/3A8p2/examples/generate_sim_data.jl:26 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition H1(Any) in module Main at /home/pkgeval/.julia/packages/Scalpels/3A8p2/examples/generate_sim_data.jl:27 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition H2(Any) in module Main at /home/pkgeval/.julia/packages/Scalpels/3A8p2/examples/generate_sim_data.jl:28 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition H3(Any) in module Main at /home/pkgeval/.julia/packages/Scalpels/3A8p2/examples/generate_sim_data.jl:29 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition H4(Any) in module Main at /home/pkgeval/.julia/packages/Scalpels/3A8p2/examples/generate_sim_data.jl:30 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition make_rotation_matrix(Real) in module Main at /home/pkgeval/.julia/packages/Scalpels/3A8p2/examples/generate_sim_data.jl:32 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Main.make_rotation_matrix), Real) in module Main at /home/pkgeval/.julia/packages/Scalpels/3A8p2/examples/generate_sim_data.jl:32 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition make_simulated_rvs_and_ccfs_to_test_scalpels() in module Main at /home/pkgeval/.julia/packages/Scalpels/3A8p2/examples/generate_sim_data.jl:44 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Main.make_simulated_rvs_and_ccfs_to_test_scalpels)) in module Main at /home/pkgeval/.julia/packages/Scalpels/3A8p2/examples/generate_sim_data.jl:44 overwritten on the same line (check for duplicate calls to `include`). Test Summary: | Pass Fail Total Time Scalpels.jl | 5 1 6 1m47.9s Load code to generate simulated data | 1 1 1m36.2s Check Code runs | 3 3 11.3s Test accuracy | 2 2 0.4s RNG of the outermost testset: Random.Xoshiro(0x12600d6706fe3cc7, 0x3771d8bae89b8858, 0x3107ada69928e5d7, 0x10fb0779ba2c86d8, 0x24b9302cd5d502ea) ERROR: LoadError: Some tests did not pass: 5 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/Scalpels/3A8p2/test/runtests.jl:4 Testing failed after 159.39s ERROR: LoadError: Package Scalpels errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3067 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2916 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval failed after 207.17s: package has test failures