Package evaluation to test TractableTimeTreeDistributions on Julia 1.14.0-DEV.1384 (b34261b5d0*) started at 2025-12-18T22:40:05.503 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 9.86s ################################################################################ # Installation # Installing TractableTimeTreeDistributions... Resolving package versions... Installed libass_jll ───────────────────── v0.17.4+0 Installed Qt6Base_jll ──────────────────── v6.8.2+2 Installed libaom_jll ───────────────────── v3.13.1+0 Installed Libuuid_jll ──────────────────── v2.41.2+0 Installed HarfBuzz_jll ─────────────────── v8.5.1+0 Installed Bzip2_jll ────────────────────── v1.0.9+0 Installed InlineStrings ────────────────── v1.4.5 Installed MultivariateStats ────────────── v0.10.3 Installed MKL_jll ──────────────────────── v2025.2.0+0 Installed Libtiff_jll ──────────────────── v4.7.2+0 Installed Cairo_jll ────────────────────── v1.18.5+0 Installed PlotThemes ───────────────────── v3.3.0 Installed Functors ─────────────────────── v0.5.2 Installed Xorg_libXinerama_jll ─────────── v1.1.6+0 Installed OrderedCollections ───────────── v1.8.1 Installed Graphite2_jll ────────────────── v1.3.15+0 Installed libinput_jll ─────────────────── v1.28.1+0 Installed SentinelArrays ───────────────── v1.4.8 Installed NearestNeighbors ─────────────── v0.4.26 Installed HypothesisTests ──────────────── v0.11.6 Installed Fontconfig_jll ───────────────── v2.17.1+0 Installed fzf_jll ──────────────────────── v0.61.1+0 Installed Distances ────────────────────── v0.10.12 Installed NaNMath ──────────────────────── v1.1.3 Installed Widgets ──────────────────────── v0.6.7 Installed QuadGK ───────────────────────── v2.11.2 Installed OpenSpecFun_jll ──────────────── v0.5.6+0 Installed Opus_jll ─────────────────────── v1.5.2+0 Installed WoodburyMatrices ─────────────── v1.0.0 Installed LoweredCodeUtils ─────────────── v3.2.2 Installed Arpack ───────────────────────── v0.5.4 Installed Tables ───────────────────────── v1.12.1 Installed Ogg_jll ──────────────────────── v1.3.6+0 Installed Xorg_libxcb_jll ──────────────── v1.17.1+0 Installed Unzip ────────────────────────── v0.2.0 Installed InverseFunctions ─────────────── v0.1.17 Installed Reexport ─────────────────────── v1.2.2 Installed LZO_jll ──────────────────────── v2.10.3+0 Installed Xorg_xcb_util_wm_jll ─────────── v0.4.2+0 Installed LERC_jll ─────────────────────── v4.0.1+0 Installed FFMPEG ───────────────────────── v0.4.5 Installed Missings ─────────────────────── v1.2.0 Installed Preferences ──────────────────── v1.5.0 Installed Phylo ────────────────────────── v0.5.4 Installed TableTraits ──────────────────── v1.0.1 Installed LLVMOpenMP_jll ───────────────── v18.1.8+0 Installed Crayons ──────────────────────── v4.1.1 Installed LaTeXStrings ─────────────────── v1.4.0 Installed SortingAlgorithms ────────────── v1.2.2 Installed eudev_jll ────────────────────── v3.2.14+0 Installed Xorg_libICE_jll ──────────────── v1.1.2+0 Installed Grisu ────────────────────────── v1.0.2 Installed JET ──────────────────────────── v0.9.20 Installed RangeArrays ──────────────────── v0.3.2 Installed Format ───────────────────────── v1.3.7 Installed EpollShim_jll ────────────────── v0.0.20230411+1 Installed Inflate ──────────────────────── v0.1.5 Installed MacroTools ───────────────────── v0.5.16 Installed URIs ─────────────────────────── v1.6.1 Installed DataStructures ───────────────── v0.18.22 Installed FillArrays ───────────────────── v1.15.0 Installed DelimitedFiles ───────────────── v1.9.1 Installed oneTBB_jll ───────────────────── v2022.0.0+1 Installed AbstractTrees ────────────────── v0.4.5 Installed ArnoldiMethod ────────────────── v0.4.0 Installed Xorg_xcb_util_jll ────────────── v0.4.1+0 Installed UnicodeFun ───────────────────── v0.4.1 Installed x264_jll ─────────────────────── v10164.0.1+0 Installed Xorg_libXau_jll ──────────────── v1.0.13+0 Installed Observables ──────────────────── v0.5.5 Installed CodecZlib ────────────────────── v0.7.8 Installed StatsBase ────────────────────── v0.34.9 Installed Xorg_libXfixes_jll ───────────── v6.0.2+0 Installed mtdev_jll ────────────────────── v1.1.7+0 Installed Qt6ShaderTools_jll ───────────── v6.8.2+1 Installed IntelOpenMP_jll ──────────────── v2025.2.0+0 Installed CEnum ────────────────────────── v0.5.0 Installed DataValueInterfaces ──────────── v1.0.0 Installed Clustering ───────────────────── v0.15.8 Installed Pixman_jll ───────────────────── v0.44.2+0 Installed Libffi_jll ───────────────────── v3.4.7+0 Installed MCMCDiagnosticTools ──────────── v0.3.15 Installed Expat_jll ────────────────────── v2.7.3+0 Installed LoggingExtras ────────────────── v1.2.0 Installed IrrationalConstants ──────────── v0.2.6 Installed StructUtils ──────────────────── v2.6.0 Installed libdecor_jll ─────────────────── v0.2.2+0 Installed libpng_jll ───────────────────── v1.6.53+0 Installed Xorg_libXcursor_jll ──────────── v1.2.4+0 Installed ColorVectorSpace ─────────────── v0.11.0 Installed SimpleTraits ─────────────────── v0.9.5 Installed Contour ──────────────────────── v0.6.3 Installed TractableTimeTreeDistributions ─ v0.1.0 Installed DataValues ───────────────────── v0.4.13 Installed HTTP ─────────────────────────── v1.10.19 Installed StableRNGs ───────────────────── v1.0.4 Installed Roots ────────────────────────── v2.2.10 Installed Interpolations ───────────────── v0.16.2 Installed Xorg_xcb_util_keysyms_jll ────── v0.4.1+0 Installed BitFlags ─────────────────────── v0.1.9 Installed libfdk_aac_jll ───────────────── v2.0.4+0 Installed FFMPEG_jll ───────────────────── v8.0.0+0 Installed Scratch ──────────────────────── v1.3.0 Installed SimpleBufferStream ───────────── v1.2.0 Installed FASTX ────────────────────────── v2.1.7 Installed ParserCombinator ─────────────── v2.2.1 Installed PooledArrays ─────────────────── v1.4.3 Installed PDMats ───────────────────────── v0.11.36 Installed Qt6Declarative_jll ───────────── v6.8.2+1 Installed WorkerUtilities ──────────────── v1.6.1 Installed TableOperations ──────────────── v1.2.0 Installed AxisArrays ───────────────────── v0.4.8 Installed DocStringExtensions ──────────── v0.9.5 Installed BioSequences ─────────────────── v3.5.0 Installed CompositionsBase ─────────────── v0.1.2 Installed CommonSolve ──────────────────── v0.2.4 Installed Rmath_jll ────────────────────── v0.5.1+0 Installed Ghostscript_jll ──────────────── v9.55.1+0 Installed StringViews ──────────────────── v1.3.6 Installed RelocatableFolders ───────────── v1.0.1 Installed KernelDensity ────────────────── v0.6.10 Installed AliasTables ──────────────────── v1.1.3 Installed JLFzf ────────────────────────── v0.1.11 Installed Plots ────────────────────────── v1.41.3 Installed ConcurrentUtilities ──────────── v2.5.0 Installed Memoization ──────────────────── v0.2.2 Installed IteratorInterfaceExtensions ──── v1.0.0 Installed SIMD ─────────────────────────── v3.7.2 Installed Combinatorics ────────────────── v1.1.0 Installed RecipesBase ──────────────────── v1.3.4 Installed InvertedIndices ──────────────── v1.3.1 Installed DataAPI ──────────────────────── v1.16.0 Installed Xorg_libXi_jll ───────────────── v1.8.3+0 Installed libevdev_jll ─────────────────── v1.13.4+0 Installed Wayland_jll ──────────────────── v1.24.0+0 Installed Measures ─────────────────────── v0.3.3 Installed Twiddle ──────────────────────── v1.1.2 Installed Colors ───────────────────────── v0.13.1 Installed ColorSchemes ─────────────────── v3.31.0 Installed Tokenize ─────────────────────── v0.5.29 Installed StaticArrays ─────────────────── v1.9.15 Installed Xorg_libxkbfile_jll ──────────── v1.1.3+0 Installed CodeTracking ─────────────────── v1.3.9 Installed StaticArraysCore ─────────────── v1.4.4 Installed Libglvnd_jll ─────────────────── v1.7.1+1 Installed AbstractFFTs ─────────────────── v1.5.0 Installed Xorg_xkbcomp_jll ─────────────── v1.4.7+0 Installed AxisAlgorithms ───────────────── v1.1.0 Installed Latexify ─────────────────────── v0.16.10 Installed StringManipulation ───────────── v0.4.2 Installed ColorTypes ───────────────────── v0.12.1 Installed Glib_jll ─────────────────────── v2.86.2+0 Installed Requires ─────────────────────── v1.3.1 Installed LogExpFunctions ──────────────── v0.3.29 Installed JuliaSyntax ──────────────────── v0.4.10 Installed Vulkan_Loader_jll ────────────── v1.3.243+0 Installed JuliaInterpreter ─────────────── v0.9.46 Installed Xorg_xcb_util_cursor_jll ─────── v0.1.6+0 Installed JSON ─────────────────────────── v1.3.0 Installed AutoHashEquals ───────────────── v2.2.0 Installed Parsers ──────────────────────── v2.8.3 Installed CSV ──────────────────────────── v0.10.15 Installed Arpack_jll ───────────────────── v3.5.2+0 Installed Rmath ────────────────────────── v0.9.0 Installed PrettyTables ─────────────────── v3.1.2 Installed Xorg_xcb_util_renderutil_jll ─── v0.3.10+0 Installed BioGenerics ──────────────────── v0.1.5 Installed StatsPlots ───────────────────── v0.15.8 Installed Distributions ────────────────── v0.25.122 Installed PhyloNetworks ────────────────── v1.3.0 Installed StatsFuns ────────────────────── v1.5.2 Installed Xorg_libSM_jll ───────────────── v1.2.6+0 Installed Xorg_libXdmcp_jll ────────────── v1.1.6+0 Installed Xorg_xkeyboard_config_jll ────── v2.44.0+0 Installed WeakRefStrings ───────────────── v1.4.2 Installed Unitful ──────────────────────── v1.27.0 Installed JLLWrappers ──────────────────── v1.7.1 Installed DataFrames ───────────────────── v1.8.1 Installed x265_jll ─────────────────────── v4.1.0+0 Installed XZ_jll ───────────────────────── v5.8.1+0 Installed Pango_jll ────────────────────── v1.57.0+0 Installed RecipesPipeline ──────────────── v0.6.12 Installed StatisticalTraits ────────────── v3.5.0 Installed NLopt ────────────────────────── v1.2.1 Installed IterTools ────────────────────── v1.10.0 Installed Graphs ───────────────────────── v1.13.1 Installed Xorg_xtrans_jll ──────────────── v1.6.0+0 Installed GR_jll ───────────────────────── v0.73.19+1 Installed Dbus_jll ─────────────────────── v1.16.2+0 Installed JpegTurbo_jll ────────────────── v3.1.4+0 Installed Adapt ────────────────────────── v4.4.0 Installed Accessors ────────────────────── v0.1.43 Installed FilePathsBase ────────────────── v0.9.24 Installed ConstructionBase ─────────────── v1.6.0 Installed Libmount_jll ─────────────────── v2.41.2+0 Installed HypergeometricFunctions ──────── v0.3.28 Installed ExceptionUnwrapping ──────────── v0.1.11 Installed Xorg_libX11_jll ──────────────── v1.8.12+0 Installed PlotUtils ────────────────────── v1.4.4 Installed Compat ───────────────────────── v4.18.1 Installed TensorCore ───────────────────── v0.1.1 Installed TranscodingStreams ───────────── v0.11.3 Installed Statistics ───────────────────── v1.11.1 Installed StatsAPI ─────────────────────── v1.8.0 Installed BioSymbols ───────────────────── v5.2.0 Installed OffsetArrays ─────────────────── v1.17.0 Installed MbedTLS ──────────────────────── v1.1.9 Installed OpenSSL ──────────────────────── v1.6.1 Installed PrecompileTools ──────────────── v1.3.3 Installed Xorg_xcb_util_image_jll ──────── v0.4.1+0 Installed TableTraitsUtils ─────────────── v1.0.2 Installed xkbcommon_jll ────────────────── v1.13.0+0 Installed GettextRuntime_jll ───────────── v0.22.4+0 Installed Ratios ───────────────────────── v0.4.5 Installed FriBidi_jll ──────────────────── v1.0.17+0 Installed GLFW_jll ─────────────────────── v3.4.1+0 Installed libvorbis_jll ────────────────── v1.3.8+0 Installed LAME_jll ─────────────────────── v3.100.3+0 Installed Xorg_libXrender_jll ──────────── v0.9.12+0 Installed ChainRulesCore ───────────────── v1.26.0 Installed IterableTables ───────────────── v1.0.0 Installed PtrArrays ────────────────────── v1.3.0 Installed FreeType2_jll ────────────────── v2.13.4+0 Installed ScientificTypesBase ──────────── v3.0.0 Installed Showoff ──────────────────────── v1.0.3 Installed FixedPointNumbers ────────────── v0.8.5 Installed IntervalSets ─────────────────── v0.7.13 Installed FFTW ─────────────────────────── v1.10.0 Installed SpecialFunctions ─────────────── v2.6.1 Installed FFTW_jll ─────────────────────── v3.3.11+0 Installed Libiconv_jll ─────────────────── v1.18.0+0 Installed MbedTLS_jll ──────────────────── v2.28.1010+0 Installed Xorg_libXext_jll ─────────────── v1.3.7+0 Installed Xorg_libXrandr_jll ───────────── v1.5.5+0 Installed Qt6Wayland_jll ───────────────── v6.8.2+2 Installed Automa ───────────────────────── v1.1.0 Installed NLopt_jll ────────────────────── v2.10.0+0 Installed MLJModelInterface ────────────── v1.12.1 Installed GR ───────────────────────────── v0.73.19 Installing 80 artifacts Installed artifact Arpack 138.3 KiB Installed artifact Ogg 250.3 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact HarfBuzz 1.7 MiB Installed artifact LERC 272.9 KiB Installed artifact Pango 2.0 MiB Installed artifact Dbus 489.8 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Xorg_libxkbfile 486.7 KiB Installed artifact libinput 1.0 MiB Installed artifact Xorg_libXrandr 354.5 KiB Installed artifact Xorg_xcb_util_keysyms 17.8 KiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact Libuuid 3.7 MiB Installed artifact Opus 925.5 KiB Installed artifact Libmount 6.5 MiB Installed artifact fzf 3.3 MiB Installed artifact Xorg_xcb_util_wm 147.9 KiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact Xorg_libXinerama 50.1 KiB Installed artifact GettextRuntime 543.0 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Libtiff 2.3 MiB Installed artifact libvorbis 271.0 KiB Installed artifact Pixman 372.2 KiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact libfdk_aac 2.8 MiB Installed artifact xkbcommon 298.7 KiB Installed artifact Bzip2 503.5 KiB Installed artifact Xorg_xcb_util_renderutil 32.1 KiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact mtdev 79.6 KiB Installed artifact XZ 1.5 MiB Installed artifact Xorg_libSM 164.1 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact eudev 3.9 MiB Installed artifact LAME 292.5 KiB Installed artifact Fontconfig 984.8 KiB Installed artifact Libiconv 1.9 MiB Installed artifact LZO 208.9 KiB Installed artifact Wayland 390.6 KiB Installed artifact Graphite2 120.2 KiB Installed artifact Libglvnd 833.5 KiB Installed artifact NLopt 322.7 KiB Installed artifact FFTW 2.2 MiB Installed artifact Ghostscript 31.4 MiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact Xorg_xcb_util_cursor 27.6 KiB Installed artifact Xorg_libXfixes 59.0 KiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact Cairo 2.2 MiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Qt6ShaderTools 2.1 MiB Installed artifact Xorg_libICE 384.9 KiB Installed artifact FriBidi 78.9 KiB Installed artifact libass 427.8 KiB Installed artifact FFMPEG 11.7 MiB Installed artifact libpng 329.0 KiB Installed artifact libevdev 117.1 KiB Installed artifact Xorg_xcb_util_image 54.3 KiB Installed artifact Expat 283.3 KiB Installed artifact MbedTLS 2.2 MiB Installed artifact Xorg_xcb_util 39.5 KiB Installed artifact x264 2.1 MiB Installed artifact libaom 6.4 MiB Installed artifact Rmath 121.9 KiB Installed artifact GLFW 180.1 KiB Installed artifact x265 1.4 MiB Installed artifact Glib 7.7 MiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact Qt6Declarative 21.6 MiB Installed artifact Libffi 44.2 KiB Installed artifact Vulkan_Loader 177.3 KiB Installed artifact libdecor 44.1 KiB Installed artifact FreeType2 1.5 MiB Installed artifact GR 16.3 MiB Installed artifact Qt6Wayland 2.2 MiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact Qt6Base 20.6 MiB Updating `~/.julia/environments/v1.14/Project.toml` [1ed903b1] + TractableTimeTreeDistributions v0.1.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [7d9fca2a] + Arpack v0.5.4 [15f4f7f2] + AutoHashEquals v2.2.0 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.5.0 [3c28c6f8] + BioSymbols v5.2.0 [d1d4a3ce] + BitFlags v0.1.9 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.15 [d360d2e6] + ChainRulesCore v1.26.0 [aaaa29a8] + Clustering v0.15.8 ⌅ [da1fd8a2] + CodeTracking v1.3.9 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.1.0 [38540f10] + CommonSolve v0.2.4 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [e7dc6d0d] + DataValues v0.4.13 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [c2308a5c] + FASTX v2.1.7 [c87230d0] + FFMPEG v0.4.5 [7a1cc6ca] + FFTW v1.10.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.15.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [d9f16b24] + Functors v0.5.2 [28b8d3ca] + GR v0.73.19 ⌃ [86223c79] + Graphs v1.13.1 [42e2da0e] + Grisu v1.0.2 [cd3eb016] + HTTP v1.10.19 [34004b35] + HypergeometricFunctions v0.3.28 [09f84164] + HypothesisTests v0.11.6 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.5 [a98d9a8b] + Interpolations v0.16.2 [8197267c] + IntervalSets v0.7.13 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [1c8ee90f] + IterableTables v1.0.0 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [c3a54625] + JET v0.9.20 [1019f520] + JLFzf v0.1.11 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.3.0 ⌅ [aa1ae85d] + JuliaInterpreter v0.9.46 ⌅ [70703baa] + JuliaSyntax v0.4.10 [5ab0869b] + KernelDensity v0.6.10 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 36.28s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 Precompilation failed after 12.13s ################################################################################ # Testing # Testing TractableTimeTreeDistributions Status `/tmp/jl_xH72Jq/Project.toml` ⌅ [864edb3b] DataStructures v0.18.22 [31c24e10] Distributions v0.25.122 [09f84164] HypothesisTests v0.11.6 ⌅ [c3a54625] JET v0.9.20 [be115224] MCMCDiagnosticTools v0.3.15 [6fafb56a] Memoization v0.2.2 [aea672f4] Phylo v0.5.4 [33ad39ac] PhyloNetworks v1.3.0 [276daf66] SpecialFunctions v2.6.1 [2913bbd2] StatsBase v0.34.9 [f3b207a7] StatsPlots v0.15.8 [1ed903b1] TractableTimeTreeDistributions v0.1.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_xH72Jq/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] 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Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [35ca27e7] eudev_jll v3.2.14+0 [214eeab7] fzf_jll v0.61.1+0 [a4ae2306] libaom_jll v3.13.1+0 [0ac62f75] libass_jll v0.17.4+0 [1183f4f0] libdecor_jll v0.2.2+0 [2db6ffa8] libevdev_jll v1.13.4+0 [f638f0a6] libfdk_aac_jll v2.0.4+0 [36db933b] libinput_jll v1.28.1+0 [b53b4c65] libpng_jll v1.6.53+0 [f27f6e37] libvorbis_jll v1.3.8+0 [009596ad] mtdev_jll v1.1.7+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [1270edf5] x264_jll v10164.0.1+0 [dfaa095f] x265_jll v4.1.0+0 [d8fb68d0] xkbcommon_jll v1.13.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ERROR: LoadError: ParseError: # Error @ /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144:18 function zip_missing(::Tuple{}, longer)  map(function (second_one) # └──────────┘ ── Invalid signature in function definition Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Unzip/BU542/src/Unzip.jl:144  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [3] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3282  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3124  [7] include_string  @ ./loading.jl:3134 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [9] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144 in expression starting at stdin:5 WARNING: Imported binding Compiler.ConstCallInfo was undeclared at import time during import to JET. WARNING: Imported binding Compiler.WorldView was undeclared at import time during import to JET. WARNING: Imported binding Compiler.istopfunction was undeclared at import time during import to JET. ERROR: LoadError: UndefVarError: `LineInfoNode` not defined in `JET` Suggestion: check for spelling errors or missing imports. Stacktrace:  [1] top-level scope  @ ~/.julia/packages/JET/sABei/src/JETBase.jl:202  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [3] top-level scope  @ ~/.julia/packages/JET/sABei/src/JET.jl:36  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [5] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3282  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3124  [9] include_string  @ ./loading.jl:3134 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [11] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/JET/sABei/src/JETBase.jl:202 in expression starting at /home/pkgeval/.julia/packages/JET/sABei/src/JET.jl:1 in expression starting at stdin:5  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("41fe7b60-77ed-43a1-b4f0-825fd5a5650d"), "Unzip") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2845  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2697  [4] macro expansion  @ ./loading.jl:2625 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2589  [7] require  @ ./loading.jl:2565 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)  @ Base ./module.jl:111  [10] top-level scope  @ ~/.julia/packages/Plots/pxXHF/src/Plots.jl:43  [11] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [12] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3282  [13] top-level scope  @ stdin:5  [14] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3124  [16] include_string  @ ./loading.jl:3134 [inlined]  [17] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [18] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Plots/pxXHF/src/Plots.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("91a5bcdd-55d7-5caf-9e0b-520d859cae80"), "Plots") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2845  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2697  [4] macro expansion  @ ./loading.jl:2625 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2589  [7] require  @ ./loading.jl:2565 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base ./module.jl:101  [11] top-level scope  @ ~/.julia/packages/Plots/pxXHF/ext/UnitfulExt.jl:6  [12] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3282  [14] top-level scope  @ stdin:5  [15] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3124  [17] include_string  @ ./loading.jl:3134 [inlined]  [18] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [19] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Plots/pxXHF/ext/UnitfulExt.jl:4 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("91a5bcdd-55d7-5caf-9e0b-520d859cae80"), "Plots") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2845  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2697  [4] macro expansion  @ ./loading.jl:2625 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2589  [7] require  @ ./loading.jl:2565 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using  @ ./module.jl:137 [inlined]  [11] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [12] top-level scope  @ ~/.julia/packages/StatsPlots/8BzHo/src/StatsPlots.jl:8  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3282  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3124  [18] include_string  @ ./loading.jl:3134 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [20] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/StatsPlots/8BzHo/src/StatsPlots.jl:1 in expression starting at stdin:5 WARNING: Method definition readnexus_translatetable(Any) in module PhyloNetworks at /home/pkgeval/.julia/packages/PhyloNetworks/KovC0/src/readwrite.jl:1074 overwritten in module TractableTimeTreeDistributions at /home/pkgeval/.julia/packages/TractableTimeTreeDistributions/wsaU9/src/utils/trees.jl:29. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 2 dependencies had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ ┌ TractableTimeTreeDistributions │ [Output was shown above] └ WARNING: Method definition _dummy_backedge() in module Memoization at /home/pkgeval/.julia/packages/Memoization/ON3Za/src/Memoization.jl:49 overwritten at /home/pkgeval/.julia/packages/Memoization/ON3Za/src/Memoization.jl:65. WARNING: Method definition readnexus_translatetable(Any) in module PhyloNetworks at /home/pkgeval/.julia/packages/PhyloNetworks/KovC0/src/readwrite.jl:1074 overwritten in module TractableTimeTreeDistributions at /home/pkgeval/.julia/packages/TractableTimeTreeDistributions/wsaU9/src/utils/trees.jl:29. WARNING: Method definition fit_mle(Type{var"#s38"} where var"#s38"<:(Distributions.Weibull{T} where T<:Real), AbstractArray{var"#s37", N} where N where var"#s37"<:Real) in module Distributions at /home/pkgeval/.julia/packages/Distributions/psM3H/src/univariate/continuous/weibull.jl:145 overwritten in module TractableTimeTreeDistributions at /home/pkgeval/.julia/packages/TractableTimeTreeDistributions/wsaU9/src/distributions/numerical_distributions_utils.jl:10. Test Summary: | Pass Total Time test ccd0 entropy on Yule-10 treeset | 1 1 40.0s Test Summary: | Pass Total Time test ccd1 entropy on Yule-10 treeset | 1 1 16.0s Test Summary: | Pass Total Time test expansion of ccd0 with two trees and five taxa | 19 19 0.2s Test Summary: | Pass Total Time test expansion of ccd0 with three trees and five taxa | 19 19 0.0s Test Summary: | Pass Total Time test ccd map on bigger Yule-10 treeset | 3 3 15.3s Test Summary: | Pass Total Time test probabilities on bigger Yule-10 treeset | 5 5 15.6s Test Summary: | Pass Total Time parameterize tree with four taxa | 3 3 1.0s Test Summary: | Pass Total Time parameterize another tree with four taxa | 3 3 0.0s Test Summary: | Pass Total Time parameterize a tree with six taxa | 5 5 0.0s Test Summary: | Pass Total Time set last_divergence for tree with four taxa | 3 3 1.0s Test Summary: | Pass Total Time set last_divergence for another tree with four taxa | 3 3 0.1s Test Summary: | Pass Total Time set last_divergence for a tree with six taxa | 5 5 0.1s Test Summary: | Pass Total Time fit on bigger Yule-10 treeset | 2 2 22.6s Test Summary: | Total Time fit on bigger Yule-10 treeset and sample | 0 19.5s Test Summary: | Pass Total Time parameterize tree with four taxa | 3 3 0.1s Test Summary: | Pass Total Time parameterize another tree with four taxa | 3 3 0.0s Test Summary: | Pass Total Time parameterize a tree with six taxa | 5 5 0.0s Test Summary: | Pass Total Time set heights for tree with four taxa | 3 3 0.1s Test Summary: | Pass Total Time set heights for another tree with four taxa | 3 3 0.0s Test Summary: | Pass Total Time set heights for a tree with six taxa | 5 5 0.0s Test Summary: | Pass Total Time fit on trees with four taxa | 2 2 2.3s Test Summary: | Pass Total Time fit on bigger Yule-10 treeset | 2 2 16.6s Test Summary: | Total Time fit on bigger Yule-10 treeset and sample | 0 15.3s Test Summary: | Pass Total Time parameterize tree with four taxa | 3 3 0.2s Test Summary: | Pass Total Time parameterize another tree with four taxa | 3 3 0.0s Test Summary: | Pass Total Time parameterize a tree with six taxa | 5 5 0.0s Test Summary: | Pass Total Time set heights for tree with four taxa | 3 3 0.3s Test Summary: | Pass Total Time set heights for another tree with four taxa | 3 3 0.1s Test Summary: | Pass Total Time set heights for a tree with six taxa | 5 5 0.1s Test Summary: | Pass Total Time construct tree with one taxa | 2 2 4.9s Test Summary: | Pass Total Time construct tree with four taxa | 2 2 0.0s ERROR: LoadError: ArgumentError: Package Profile not found in current path. - Run `import Pkg; Pkg.add("Profile")` to install the Profile package. Stacktrace: [1] macro expansion @ ./loading.jl:2606 [inlined] [2] macro expansion @ ./lock.jl:376 [inlined] [3] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2589 [4] require @ ./loading.jl:2565 [inlined] [5] eval_import_path @ ./module.jl:36 [inlined] [6] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [7] _eval_using @ ./module.jl:137 [inlined] [8] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [9] top-level scope @ ~/.julia/packages/TractableTimeTreeDistributions/wsaU9/test/test_ccd1_probabilities.jl:1 [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [11] top-level scope @ ~/.julia/packages/TractableTimeTreeDistributions/wsaU9/test/runtests.jl:16 [12] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [13] top-level scope @ none:6 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [16] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/TractableTimeTreeDistributions/wsaU9/test/test_ccd1_probabilities.jl:1 in expression starting at /home/pkgeval/.julia/packages/TractableTimeTreeDistributions/wsaU9/test/runtests.jl:16 Testing failed after 1192.22s ERROR: LoadError: Package TractableTimeTreeDistributions errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3067 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2916 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval failed after 1303.05s: package is using an unknown package