Package evaluation to test TrixiBottomTopography on Julia 1.14.0-DEV.1372 (893635dc59*) started at 2025-12-16T14:15:33.394 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 9.79s ################################################################################ # Installation # Installing TrixiBottomTopography... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [86af9953] + TrixiBottomTopography v0.1.4 Updating `~/.julia/environments/v1.14/Manifest.toml` [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [86af9953] + TrixiBottomTopography v0.1.4 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b27032c2] + LibCURL v1.0.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 Installation completed after 3.87s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 Precompilation failed after 13.58s ################################################################################ # Testing # Testing TrixiBottomTopography Status `/tmp/jl_YSEaUZ/Project.toml` [95686e15] KernelInterpolation v0.3.8 [86af9953] TrixiBottomTopography v0.1.4 [f43a241f] Downloads v1.7.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_YSEaUZ/Manifest.toml` [47edcb42] ADTypes v1.20.0 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.4.0 [4fba245c] ArrayInterface v7.22.0 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] CPUSummary v0.2.7 [3cb15238] ChangePrecision v1.1.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [864edb3b] DataStructures v0.19.3 [2b5f629d] DiffEqBase v6.192.0 [459566f4] DiffEqCallbacks v4.10.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.12 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.17 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [a4df4552] FastPower v1.2.0 [1a297f60] FillArrays v1.15.0 [f6369f11] ForwardDiff v1.3.0 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [615f187c] IfElse v0.1.1 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [ae98c720] Jieko v0.2.1 [95686e15] KernelInterpolation v0.3.8 [10f19ff3] LayoutPointers v0.1.17 [9c8b4983] LightXML v0.9.3 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [2e0e35c7] Moshi v0.3.7 [46d2c3a1] MuladdMacro v0.2.4 [102ac46a] MultivariatePolynomials v0.5.13 [d8a4904e] MutableArithmetics v1.6.7 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [f517fe37] Polyester v0.7.18 [1d0040c9] PolyesterWeave v0.2.2 [d236fae5] PreallocationTools v0.4.34 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [dc215faf] ReadVTK v0.2.5 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.40.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [7e49a35a] RuntimeGeneratedFunctions v0.5.16 [94e857df] SIMDTypes v0.1.0 [0bca4576] SciMLBase v2.128.0 [a6db7da4] SciMLLogging v1.7.1 [c0aeaf25] SciMLOperators v1.14.1 [431bcebd] SciMLPublic v1.0.0 [53ae85a6] SciMLStructures v1.7.0 [efcf1570] Setfield v1.1.2 [ce78b400] SimpleUnPack v1.1.0 [276daf66] SpecialFunctions v2.6.1 [aedffcd0] Static v1.3.1 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [7792a7ef] StrideArraysCore v0.5.8 [2efcf032] SymbolicIndexingInterface v0.3.46 [8290d209] ThreadingUtilities v0.5.5 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [9a0f1c46] TrixiBase v0.1.8 [86af9953] TrixiBottomTopography v0.1.4 [781d530d] TruncatedStacktraces v1.4.0 [afbbf031] TypedPolynomials v0.4.2 [4004b06d] VTKBase v1.0.1 [64499a7a] WriteVTK v1.21.2 [94ce4f54] Libiconv_jll v1.18.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [02c8fc9c] XML2_jll v2.15.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Testing Running tests... Check conversion routines: Error During Test at /home/pkgeval/.julia/packages/TrixiBottomTopography/fq8t8/test/test_convert.jl:7 Got exception outside of a @test SystemError: opening file "/home/pkgeval/.julia/packages/TrixiBottomTopography/fq8t8/test/data/rhine_1d_1_x_1.txt": Permission denied Stacktrace: [1] systemerror(p::String, errno::Int32; extrainfo::Nothing) @ Base ./error.jl:186 [2] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Bool, append::Nothing) @ Base ./iostream.jl:327 [3] open @ ./iostream.jl:306 [inlined] [4] open(fname::String, mode::String; lock::Bool) @ Base ./iostream.jl:390 [5] open @ ./iostream.jl:389 [inlined] [6] convert_dgm_1d(path_read::String, path_write::String; excerpt::Int64, direction::String, section::Int64) @ TrixiBottomTopography ~/.julia/packages/TrixiBottomTopography/fq8t8/src/auxiliary/convert.jl:87 [7] convert_dgm_1d(path_read::String, path_write::String) @ TrixiBottomTopography ~/.julia/packages/TrixiBottomTopography/fq8t8/src/auxiliary/convert.jl:23 [8] top-level scope @ ~/.julia/packages/TrixiBottomTopography/fq8t8/test/test_convert.jl:9 [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [10] macro expansion @ ~/.julia/packages/TrixiBottomTopography/fq8t8/test/test_convert.jl:23 [inlined] [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [12] top-level scope @ ~/.julia/packages/TrixiBottomTopography/fq8t8/test/runtests.jl:9 [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [14] macro expansion @ ~/.julia/packages/TrixiBottomTopography/fq8t8/test/runtests.jl:10 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [16] macro expansion @ ~/.julia/packages/TrixiBottomTopography/fq8t8/test/runtests.jl:10 [inlined] [17] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [18] top-level scope @ none:6 [19] eval(m::Module, e::Any) @ Core ./boot.jl:489 [20] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [21] _start() @ Base ./client.jl:577 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("afbbf031-7a57-5f58-a1b9-b774a0fad08d"), "TypedPolynomials") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2813  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2665  [4] macro expansion  @ ./loading.jl:2593 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2557  [7] require  @ ./loading.jl:2533 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base ./module.jl:101  [11] top-level scope  @ ~/.julia/packages/KernelInterpolation/O51IC/src/KernelInterpolation.jl:29  [12] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3250  [14] top-level scope  @ stdin:5  [15] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3092  [17] include_string  @ ./loading.jl:3102 [inlined]  [18] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [19] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/KernelInterpolation/O51IC/src/KernelInterpolation.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ KernelInterpolation │ [Output was shown above] └ 1D RBF interpolation: Error During Test at /home/pkgeval/.julia/packages/TrixiBottomTopography/fq8t8/test/runtests.jl:34 Got exception outside of a @test LoadError: The following 1 package failed to precompile: KernelInterpolation Failed to precompile KernelInterpolation [95686e15-3c94-4443-8f08-76d06d509f7b] to "/home/pkgeval/.julia/compiled/v1.14/KernelInterpolation/jl_pWwHox" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/TrixiBottomTopography/fq8t8/test/test_rbf_1d.jl:1 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("afbbf031-7a57-5f58-a1b9-b774a0fad08d"), "TypedPolynomials") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2813  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2665  [4] macro expansion  @ ./loading.jl:2593 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2557  [7] require  @ ./loading.jl:2533 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base ./module.jl:101  [11] top-level scope  @ ~/.julia/packages/KernelInterpolation/O51IC/src/KernelInterpolation.jl:29  [12] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3250  [14] top-level scope  @ stdin:5  [15] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3092  [17] include_string  @ ./loading.jl:3102 [inlined]  [18] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [19] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/KernelInterpolation/O51IC/src/KernelInterpolation.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ KernelInterpolation │ [Output was shown above] └ 2D RBF interpolation: Error During Test at /home/pkgeval/.julia/packages/TrixiBottomTopography/fq8t8/test/runtests.jl:39 Got exception outside of a @test LoadError: The following 1 package failed to precompile: KernelInterpolation Failed to precompile KernelInterpolation [95686e15-3c94-4443-8f08-76d06d509f7b] to "/home/pkgeval/.julia/compiled/v1.14/KernelInterpolation/jl_SbcPjz" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/TrixiBottomTopography/fq8t8/test/test_rbf_2d.jl:1 Test Summary: | Pass Error Total Time TrixiBottomTopography.jl | 10 3 13 6m03.3s Conversion | 1 1 6.5s Check conversion routines | 1 1 5.7s Linear B-spline interpolation | 1 1 1.6s Cubic B-spline interpolation | 4 4 12.6s Bilinear B-spline interpolation | 1 1 1.8s Bicubic B-spline interpolation | 4 4 2m45.5s 1D RBF interpolation | 1 1 1m40.3s 2D RBF interpolation | 1 1 1m14.9s RNG of the outermost testset: Random.Xoshiro(0x36f10f24997633b7, 0x4fa748cedb6ea5c4, 0x5bc2ba6b366acd5f, 0xd7b06d74e51958cc, 0xd6878bdb7f899572) ERROR: LoadError: Some tests did not pass: 10 passed, 0 failed, 3 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/TrixiBottomTopography/fq8t8/test/runtests.jl:6 Testing failed after 383.16s ERROR: LoadError: Package TrixiBottomTopography errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3067 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2916 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval failed after 426.97s: package fails to precompile