Package evaluation to test SpikeSorting on Julia 1.14.0-DEV.1372 (893635dc59*) started at 2025-12-16T20:13:47.501 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 6.91s ################################################################################ # Installation # Installing SpikeSorting... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [acc641c0] + SpikeSorting v0.2.1 Updating `~/.julia/environments/v1.14/Manifest.toml` ⌅ [7d9fca2a] + Arpack v0.4.0 ⌃ [13072b0f] + AxisAlgorithms v1.0.1 [159f3aea] + Cairo v1.1.1 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [34da2185] + Compat v4.18.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [aaf54ef3] + DistributedArrays v0.6.7 [ffbed154] + DocStringExtensions v0.9.5 [53c48c17] + FixedPointNumbers v0.8.5 [a2bd30eb] + Graphics v1.1.3 [4c0ca9eb] + Gtk v1.3.1 [18e54dd8] + IntegerMathUtils v0.1.3 ⌅ [a98d9a8b] + Interpolations v0.12.10 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 ⌅ [6f286f6a] + MultivariateStats v0.7.0 [77ba4419] + NaNMath v1.1.3 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [21216c6a] + Preferences v1.5.0 [27ebfcd6] + Primes v0.5.7 [c84ed2f1] + Ratios v0.4.5 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [6c6a2e73] + Scratch v1.3.0 [a2af1166] + SortingAlgorithms v1.2.2 [acc641c0] + SpikeSorting v0.2.1 ⌅ [90137ffa] + StaticArrays v0.12.6 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 ⌅ [2913bbd2] + StatsBase v0.33.21 ⌅ [efce3f68] + WoodburyMatrices v0.5.6 [7b86fcea] + ATK_jll v2.38.1+0 ⌅ [68821587] + Arpack_jll v3.5.2+0 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.5+0 [ee1fde0b] + Dbus_jll v1.16.2+0 [2702e6a9] + EpollShim_jll v0.0.20230411+1 [2e619515] + Expat_jll v2.7.3+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [77ec8976] + GTK3_jll v3.24.31+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [7746bdde] + Glib_jll v2.86.2+0 [3b182d85] + Graphite2_jll v1.3.15+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [aacddb02] + JpegTurbo_jll v3.1.4+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 [42c93a91] + Libepoxy_jll v1.5.11+0 ⌅ [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.2+0 [925c91fb] + Librsvg_jll v2.54.7+0 [89763e89] + Libtiff_jll v4.7.2+0 [38a345b3] + Libuuid_jll v2.41.2+0 [36c8627f] + Pango_jll v1.57.0+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [a2964d1f] + Wayland_jll v1.24.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.1+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [3c9796d7] + Xorg_libXcomposite_jll v0.4.6+0 [935fb764] + Xorg_libXcursor_jll v1.2.4+0 [0aeada51] + Xorg_libXdamage_jll v1.1.6+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] + Xorg_libXi_jll v1.8.3+0 [d1454406] + Xorg_libXinerama_jll v1.1.6+0 [ec84b674] + Xorg_libXrandr_jll v1.5.5+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [b6f176f1] + Xorg_libXtst_jll v1.2.5+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [cc61e674] + Xorg_libxkbfile_jll v1.1.3+0 [35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 ⌅ [b437f822] + adwaita_icon_theme_jll v3.33.93+0 [de012916] + at_spi2_atk_jll v2.38.0+0 [0fc3237b] + at_spi2_core_jll v2.58.2+0 [da03df04] + gdk_pixbuf_jll v2.42.13+0 ⌅ [059c91fe] + hicolor_icon_theme_jll v0.17.0+3 [bf975903] + iso_codes_jll v4.18.0+0 [b53b4c65] + libpng_jll v1.6.53+0 [d8fb68d0] + xkbcommon_jll v1.13.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 3.6s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 Precompilation failed after 9.81s ################################################################################ # Testing # Testing SpikeSorting Status `/tmp/jl_8LcUj5/Project.toml` [159f3aea] Cairo v1.1.1 [aaf54ef3] DistributedArrays v0.6.7 [4c0ca9eb] Gtk v1.3.1 ⌅ [a98d9a8b] Interpolations v0.12.10 ⌅ [6f286f6a] MultivariateStats v0.7.0 [acc641c0] SpikeSorting v0.2.1 [37e2e46d] LinearAlgebra v1.13.0 [1a1011a3] SharedArrays v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_8LcUj5/Manifest.toml` ⌅ [7d9fca2a] Arpack v0.4.0 ⌃ [13072b0f] AxisAlgorithms v1.0.1 [159f3aea] Cairo v1.1.1 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [34da2185] Compat v4.18.1 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [aaf54ef3] DistributedArrays v0.6.7 [ffbed154] DocStringExtensions v0.9.5 [53c48c17] FixedPointNumbers v0.8.5 [a2bd30eb] Graphics v1.1.3 [4c0ca9eb] Gtk v1.3.1 [18e54dd8] IntegerMathUtils v0.1.3 ⌅ [a98d9a8b] Interpolations v0.12.10 [92d709cd] IrrationalConstants v0.2.6 [692b3bcd] JLLWrappers v1.7.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 ⌅ [6f286f6a] MultivariateStats v0.7.0 [77ba4419] NaNMath v1.1.3 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 [21216c6a] Preferences v1.5.0 [27ebfcd6] Primes v0.5.7 [c84ed2f1] Ratios v0.4.5 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [6c6a2e73] Scratch v1.3.0 [a2af1166] SortingAlgorithms v1.2.2 [acc641c0] SpikeSorting v0.2.1 ⌅ [90137ffa] StaticArrays v0.12.6 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 ⌅ [2913bbd2] StatsBase v0.33.21 ⌅ [efce3f68] WoodburyMatrices v0.5.6 [7b86fcea] ATK_jll v2.38.1+0 ⌅ [68821587] Arpack_jll v3.5.2+0 [6e34b625] Bzip2_jll v1.0.9+0 [83423d85] Cairo_jll v1.18.5+0 [ee1fde0b] Dbus_jll v1.16.2+0 [2702e6a9] EpollShim_jll v0.0.20230411+1 [2e619515] Expat_jll v2.7.3+0 [a3f928ae] Fontconfig_jll v2.17.1+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [77ec8976] GTK3_jll v3.24.31+0 [b0724c58] GettextRuntime_jll v0.22.4+0 [7746bdde] Glib_jll v2.86.2+0 [3b182d85] Graphite2_jll v1.3.15+0 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [aacddb02] JpegTurbo_jll v3.1.4+0 [88015f11] LERC_jll v4.0.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 [42c93a91] Libepoxy_jll v1.5.11+0 ⌅ [e9f186c6] Libffi_jll v3.4.7+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.2+0 [925c91fb] Librsvg_jll v2.54.7+0 [89763e89] Libtiff_jll v4.7.2+0 [38a345b3] Libuuid_jll v2.41.2+0 [36c8627f] Pango_jll v1.57.0+0 ⌅ [30392449] Pixman_jll v0.44.2+0 [a2964d1f] Wayland_jll v1.24.0+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [ffd25f8a] XZ_jll v5.8.1+0 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [3c9796d7] Xorg_libXcomposite_jll v0.4.6+0 [935fb764] Xorg_libXcursor_jll v1.2.4+0 [0aeada51] Xorg_libXdamage_jll v1.1.6+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [d091e8ba] Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] Xorg_libXi_jll v1.8.3+0 [d1454406] Xorg_libXinerama_jll v1.1.6+0 [ec84b674] Xorg_libXrandr_jll v1.5.5+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [b6f176f1] Xorg_libXtst_jll v1.2.5+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [cc61e674] Xorg_libxkbfile_jll v1.1.3+0 [35661453] Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 ⌅ [b437f822] adwaita_icon_theme_jll v3.33.93+0 [de012916] at_spi2_atk_jll v2.38.0+0 [0fc3237b] at_spi2_core_jll v2.58.2+0 [da03df04] gdk_pixbuf_jll v2.42.13+0 ⌅ [059c91fe] hicolor_icon_theme_jll v0.17.0+3 [bf975903] iso_codes_jll v4.18.0+0 [b53b4c65] libpng_jll v1.6.53+0 [d8fb68d0] xkbcommon_jll v1.13.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/TBuvH/src/gridded/gridded.jl:29 declares type variable pad but does not use it. WARNING: method definition for interpolate! at /home/pkgeval/.julia/packages/Interpolations/TBuvH/src/deprecations.jl:30 declares type variable TWeights but does not use it. 1 dependency had output during precompilation: ┌ Interpolations │ WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/TBuvH/src/gridded/gridded.jl:29 declares type variable pad but does not use it. │ WARNING: method definition for interpolate! at /home/pkgeval/.julia/packages/Interpolations/TBuvH/src/deprecations.jl:30 declares type variable TWeights but does not use it. └ ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for SpikeSorting [acc641c0-d14d-5ed3-8a01-2b4adfca2b15] │ exception = Required dependency Base.PkgId(Base.UUID("76f85450-5226-5b5a-8eaa-529ad045b433"), "LibGit2") failed to load from a cache file. └ @ Base loading.jl:2891 ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for Gtk [4c0ca9eb-093a-5379-98c5-f87ac0bbbf44] │ exception = Required dependency Base.PkgId(Base.UUID("76f85450-5226-5b5a-8eaa-529ad045b433"), "LibGit2") failed to load from a cache file. └ @ Base loading.jl:2891 WARNING: Detected access to binding `Gtk.ShortNames` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for MultivariateStats [6f286f6a-111f-5878-ab1e-185364afe411] │ exception = Required dependency Base.PkgId(Base.UUID("864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"), "DataStructures") failed to load from a cache file. └ @ Base loading.jl:2891 Testing SpikeSorting tests passed Testing completed after 120.85s PkgEval succeeded after 155.21s