Package evaluation to test Rfam on Julia 1.14.0-DEV.1372 (893635dc59*) started at 2025-12-16T13:58:56.401


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 8.19s


################################################################################
# Installation
#

Installing Rfam...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [38c5b72b] + Rfam v3.2.0
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [692b3bcd] + JLLWrappers v1.7.1
  [21216c6a] + Preferences v1.5.0
  [38c5b72b] + Rfam v3.2.0
  [be1be57a] + Gzip_jll v1.14.0+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [b27032c2] + LibCURL v1.0.0
  [8f399da3] + Libdl v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [de0858da] + Printf v1.11.0
  [ea8e919c] + SHA v1.0.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.17.0+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.12.2
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850ede] + nghttp2_jll v1.68.0+1

Installation completed after 3.92s


################################################################################
# Precompilation
#

ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:10
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/precompile.jl:6

caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:7
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577

Precompilation failed after 10.95s



################################################################################
# Testing
#

     Testing Rfam
      Status `/tmp/jl_DggcdT/Project.toml`
  [4c88cf16] Aqua v0.8.14
  [38c5b72b] Rfam v3.2.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_DggcdT/Manifest.toml`
  [4c88cf16] Aqua v0.8.14
  [34da2185] Compat v4.18.1
  [692b3bcd] JLLWrappers v1.7.1
  [21216c6a] Preferences v1.5.0
  [38c5b72b] Rfam v3.2.0
  [be1be57a] Gzip_jll v1.14.0+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [b27032c2] LibCURL v1.0.0
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.14.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [f489334b] StyledStrings v1.13.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.17.0+0
  [e37daf67] LibGit2_jll v1.9.2+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.12.2
  [458c3c95] OpenSSL_jll v3.5.4+0
  [efcefdf7] PCRE2_jll v10.47.0+0
  [83775a58] Zlib_jll v1.3.1+2
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850ede] nghttp2_jll v1.68.0+1
  [3f19e933] p7zip_jll v17.7.0+0
     Testing Running tests...
[ Info: RFAM Directory /tmp/jl_e9H9sW set.
[ Info: Rfam version 14.7 set.
Test Summary:                                | Pass  Total   Time
aqua                                         |   11     11  29.4s
  Method ambiguity                           |    1      1   4.8s
  Unbound type parameters                    |    1      1   0.1s
  Undefined exports                          |    1      1   0.0s
  Compare Project.toml and test/Project.toml |    1      1   0.3s
  Stale dependencies                         |    1      1   2.3s
  Compat bounds                              |    4      4   0.4s
  Piracy                                     |    1      1   0.1s
  Persistent tasks                           |    1      1  10.5s
[ Info: Downloading RF00162 to /tmp/jl_e9H9sW/14.7/fasta_files/RF00162.fa ...
[ Info: Downloading Rfam.cm to /tmp/jl_e9H9sW/14.7/Rfam.cm ...
[ Info: Downloading Rfam.seed to /tmp/jl_e9H9sW/14.7/Rfam.seed ...
[ Info: Downloading Rfam.seed_tree.tar.gz to /tmp/jl_e9H9sW/14.7/Rfam.seed_tree ...
     Testing Rfam tests passed 

Testing completed after 46.66s

PkgEval succeeded after 88.69s