Package evaluation to test PhysiologyPlotting on Julia 1.14.0-DEV.1372 (893635dc59*) started at 2025-12-16T21:50:07.161


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 7.89s


################################################################################
# Installation
#

Installing PhysiologyPlotting...
   Resolving package versions...
   Installed PhysiologyPlotting ─ v0.1.20
    Updating `~/.julia/environments/v1.14/Project.toml`
  [d5a2a81f] + PhysiologyPlotting v0.1.20
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [621f4979] + AbstractFFTs v1.5.0
  [1520ce14] + AbstractTrees v0.4.5
  [79e6a3ab] + Adapt v4.4.0
  [66dad0bd] + AliasTables v1.1.3
  [ec485272] + ArnoldiMethod v0.4.0
  [4fba245c] + ArrayInterface v7.22.0
  [13072b0f] + AxisAlgorithms v1.1.0
  [39de3d68] + AxisArrays v0.4.8
  [62783981] + BitTwiddlingConvenienceFunctions v0.1.6
  [fa961155] + CEnum v0.5.0
  [2a0fbf3d] + CPUSummary v0.2.7
  [aafaddc9] + CatIndices v0.2.2
  [d360d2e6] + ChainRulesCore v1.26.0
  [0b6fb165] + ChunkCodecCore v1.0.1
  [4c0bbee4] + ChunkCodecLibZlib v1.0.0
  [55437552] + ChunkCodecLibZstd v1.0.0
  [fb6a15b2] + CloseOpenIntervals v0.1.13
  [aaaa29a8] + Clustering v0.15.8
  [35d6a980] + ColorSchemes v3.31.0
  [3da002f7] + ColorTypes v0.12.1
  [c3611d14] + ColorVectorSpace v0.11.0
  [5ae59095] + Colors v0.13.1
  [f70d9fcc] + CommonWorldInvalidations v1.0.0
  [34da2185] + Compat v4.18.1
  [ed09eef8] + ComputationalResources v0.3.2
  [187b0558] + ConstructionBase v1.6.0
  [150eb455] + CoordinateTransformations v0.6.4
  [adafc99b] + CpuId v0.3.1
  [5a033b19] + CurveFit v0.6.1
  [dc8bdbbb] + CustomUnitRanges v1.0.2
⌅ [717857b8] + DSP v0.7.10
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.19.3
  [b4f34e82] + Distances v0.10.12
  [31c24e10] + Distributions v0.25.122
  [ffbed154] + DocStringExtensions v0.9.5
  [da7a9670] + ElectroPhysiology v0.5.50
  [e2ba6199] + ExprTools v0.1.10
  [4f61f5a4] + FFTViews v0.3.2
  [7a1cc6ca] + FFTW v1.10.0
  [5789e2e9] + FileIO v1.17.1
  [1a297f60] + FillArrays v1.15.0
  [53c48c17] + FixedPointNumbers v0.8.5
  [a2bd30eb] + Graphics v1.1.3
  [86223c79] + Graphs v1.13.2
  [076d061b] + HashArrayMappedTries v0.2.0
  [2c695a8d] + HistogramThresholding v0.3.1
  [3e5b6fbb] + HostCPUFeatures v0.1.18
  [34004b35] + HypergeometricFunctions v0.3.28
  [615f187c] + IfElse v0.1.1
  [2803e5a7] + ImageAxes v0.6.12
  [c817782e] + ImageBase v0.1.7
  [cbc4b850] + ImageBinarization v0.3.1
  [f332f351] + ImageContrastAdjustment v0.3.12
  [a09fc81d] + ImageCore v0.10.5
  [89d5987c] + ImageCorners v0.1.3
  [51556ac3] + ImageDistances v0.2.17
  [6a3955dd] + ImageFiltering v0.7.12
  [82e4d734] + ImageIO v0.6.9
  [6218d12a] + ImageMagick v1.4.2
  [bc367c6b] + ImageMetadata v0.9.10
  [787d08f9] + ImageMorphology v0.4.7
  [2996bd0c] + ImageQualityIndexes v0.3.7
  [80713f31] + ImageSegmentation v1.10.0
  [4e3cecfd] + ImageShow v0.3.8
  [02fcd773] + ImageTransformations v0.10.2
  [916415d5] + Images v0.26.2
  [9b13fd28] + IndirectArrays v1.0.0
  [d25df0c9] + Inflate v0.1.5
  [842dd82b] + InlineStrings v1.4.5
  [1d092043] + IntegralArrays v0.1.6
  [a98d9a8b] + Interpolations v0.16.2
  [8197267c] + IntervalSets v0.7.13
  [92d709cd] + IrrationalConstants v0.2.6
  [c8e1da08] + IterTools v1.10.0
  [033835bb] + JLD2 v0.6.3
  [692b3bcd] + JLLWrappers v1.7.1
  [b835a17e] + JpegTurbo v0.1.6
  [10f19ff3] + LayoutPointers v0.1.17
  [8cdb02fc] + LazyModules v0.3.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [bdcacae8] + LoopVectorization v0.12.173
  [1914dd2f] + MacroTools v0.5.16
  [d125e4d3] + ManualMemory v0.1.8
  [dbb5928d] + MappedArrays v0.4.3
  [626554b9] + MetaGraphs v0.8.1
  [e1d29d7a] + Missings v1.2.0
  [78c3b35d] + Mocking v0.8.1
  [e94cdb99] + MosaicViews v0.3.4
  [77ba4419] + NaNMath v1.1.3
  [b8a86587] + NearestNeighbors v0.4.26
  [f09324ee] + Netpbm v1.1.1
  [6fe1bfb0] + OffsetArrays v1.17.0
  [52e1d378] + OpenEXR v0.3.3
  [bac558e1] + OrderedCollections v1.8.1
  [90014a1f] + PDMats v0.11.36
  [f57f5aa1] + PNGFiles v0.4.4
  [5432bcbf] + PaddedViews v0.5.12
  [d96e819e] + Parameters v0.12.3
  [d5a2a81f] + PhysiologyPlotting v0.1.20
  [eebad327] + PkgVersion v0.3.3
  [1d0040c9] + PolyesterWeave v0.2.2
  [f27b6e38] + Polynomials v4.1.0
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [92933f4c] + ProgressMeter v1.11.0
  [43287f4e] + PtrArrays v1.3.0
  [4b34888f] + QOI v1.0.2
  [1fd47b50] + QuadGK v2.11.2
  [94ee1d12] + Quaternions v0.7.7
  [b3c3ace0] + RangeArrays v0.3.2
  [c84ed2f1] + Ratios v0.4.5
  [c1ae055f] + RealDot v0.1.0
  [3cdcf5f2] + RecipesBase v1.3.4
  [189a3867] + Reexport v1.2.2
  [dee08c22] + RegionTrees v0.3.2
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.9.0
  [6038ab10] + Rotations v1.7.1
  [fdea26ae] + SIMD v3.7.2
  [94e857df] + SIMDTypes v0.1.0
  [476501e8] + SLEEFPirates v0.6.43
  [431bcebd] + SciMLPublic v1.0.0
  [7e506255] + ScopedValues v1.5.0
  [6c6a2e73] + Scratch v1.3.0
  [efcf1570] + Setfield v1.1.2
  [699a6c99] + SimpleTraits v0.9.5
  [47aef6b3] + SimpleWeightedGraphs v1.5.1
  [45858cf5] + Sixel v0.1.5
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.6.1
  [cae243ae] + StackViews v0.1.2
  [aedffcd0] + Static v1.3.1
  [0d7ed370] + StaticArrayInterface v1.8.0
  [90137ffa] + StaticArrays v1.9.15
  [1e83bf80] + StaticArraysCore v1.4.4
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.8.0
  [2913bbd2] + StatsBase v0.34.9
  [4c63d2b9] + StatsFuns v1.5.2
  [dc5dba14] + TZJData v1.5.0+2025b
  [62fd8b95] + TensorCore v0.1.1
  [8290d209] + ThreadingUtilities v0.5.5
  [731e570b] + TiffImages v0.11.6
  [06e1c1a7] + TiledIteration v0.5.0
  [f269a46b] + TimeZones v1.22.2
  [3a884ed6] + UnPack v1.0.2
  [3d5dd08c] + VectorizationBase v0.21.72
  [e3aaa7dc] + WebP v0.1.3
  [efce3f68] + WoodburyMatrices v1.0.0
  [6e34b625] + Bzip2_jll v1.0.9+0
  [f5851436] + FFTW_jll v3.3.11+0
  [61579ee1] + Ghostscript_jll v9.55.1+0
  [59f7168a] + Giflib_jll v5.2.3+0
  [c73af94c] + ImageMagick_jll v7.1.2011+0
  [905a6f67] + Imath_jll v3.1.11+0
  [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0
  [aacddb02] + JpegTurbo_jll v3.1.4+0
  [88015f11] + LERC_jll v4.0.1+0
  [7e76a0d4] + Libglvnd_jll v1.7.1+1
  [89763e89] + Libtiff_jll v4.7.2+0
  [d3a379c0] + LittleCMS_jll v2.17.0+0
  [856f044c] + MKL_jll v2025.2.0+0
  [18a262bb] + OpenEXR_jll v3.2.4+0
  [643b3616] + OpenJpeg_jll v2.5.5+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [ffd25f8a] + XZ_jll v5.8.1+0
  [4f6342f7] + Xorg_libX11_jll v1.8.12+0
  [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0
  [a3789734] + Xorg_libXdmcp_jll v1.1.6+0
  [1082639a] + Xorg_libXext_jll v1.3.7+0
  [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0
  [c5fb5394] + Xorg_xtrans_jll v1.6.0+0
  [b53b4c65] + libpng_jll v1.6.53+0
  [075b6546] + libsixel_jll v1.10.5+0
  [c5f90fcd] + libwebp_jll v1.6.0+0
  [337d8026] + libzip_jll v1.11.3+0
  [1317d2d5] + oneTBB_jll v2022.0.0+1
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v1.0.0
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.14.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.13.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.17.0+0
  [e37daf67] + LibGit2_jll v1.9.2+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.12.2
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [efcefdf7] + PCRE2_jll v10.47.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.68.0+1
  [3f19e933] + p7zip_jll v17.7.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
    Building PhysiologyPlotting → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/f00e2a18edd669d6bb481935dd90f2f7a3b4d383/build.log`

Installation completed after 11.43s


################################################################################
# Precompilation
#

ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:10
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/precompile.jl:6

caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:7
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577

Precompilation failed after 13.52s



################################################################################
# Testing
#

     Testing PhysiologyPlotting
     Cloning git-repo `https://github.com/mattar13/PhysiologyAnalysis.jl.git`

Testing failed after 6.35s

ERROR: LoadError: MethodError: no method matching startswith(::Base.SHA1, ::String)
The function `startswith` exists, but no method is defined for this combination of argument types.

Closest candidates are:
  startswith(!Matched::IO, ::Union{SubString{String}, String})
   @ Base strings/util.jl:93
  startswith(!Matched::IO, ::AbstractString)
   @ Base strings/util.jl:99
  startswith(!Matched::Union{SubString{String}, String}, ::Union{SubString{String}, String})
   @ Base strings/util.jl:69
  ...

Stacktrace:
  [1] (::Pkg.Types.var"#handle_repo_add!##2#handle_repo_add!##3"{Pkg.Types.Context, PackageSpec, String})(repo::LibGit2.GitRepo)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:1038
  [2] with(f::Pkg.Types.var"#handle_repo_add!##2#handle_repo_add!##3"{Pkg.Types.Context, PackageSpec, String}, obj::LibGit2.GitRepo)
    @ LibGit2 /opt/julia/share/julia/stdlib/v1.14/LibGit2/src/types.jl:1230
  [3] handle_repo_add!(ctx::Pkg.Types.Context, pkg::PackageSpec)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:1024
  [4] collect_fixed!(env::Pkg.Types.EnvCache, pkgs::Vector{PackageSpec}, names::Dict{UUID, String}, julia_version::VersionNumber)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:655
  [5] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{PackageSpec}, julia_version::VersionNumber, installed_only::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:787
  [6] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}, level::UpgradeLevel; skip_writing_project::Bool, preserve::Nothing)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2491
  [7] up
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2465 [inlined]
  [8] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; level::UpgradeLevel, mode::PackageMode, preserve::Nothing, update_registry::Bool, skip_writing_project::Bool, kwargs::@Kwargs{io::Base.DevNull})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:465
  [9] up
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:433 [inlined]
 [10] up
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:177 [inlined]
 [11] #resolve#170
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:471 [inlined]
 [12] resolve
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:470 [inlined]
 [13] (::Pkg.Operations.var"#216#217"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#231#232"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec})()
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2815
 [14] with_temp_env(fn::Pkg.Operations.var"#216#217"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#231#232"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec}, temp_env::String)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2685
 [15] (::Pkg.Operations.var"#212#213"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#231#232"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec, String, String})(tmp::String)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2799
 [16] mktempdir(fn::Pkg.Operations.var"#212#213"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#231#232"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec, String, String}, parent::String; prefix::String)
    @ Base.Filesystem ./file.jl:936
 [17] mktempdir(fn::Function, parent::String)
    @ Base.Filesystem ./file.jl:932
 [18] sandbox(fn::Function, ctx::Pkg.Types.Context, target::PackageSpec, sandbox_path::String, sandbox_project_override::Nothing; preferences::Dict{String, Any}, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2746
 [19] kwcall(::@NamedTuple{preferences::Dict{String, Any}, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool}, ::typeof(Pkg.Operations.sandbox), fn::Function, ctx::Pkg.Types.Context, target::PackageSpec, sandbox_path::String, sandbox_project_override::Nothing)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2736
 [20] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3010
 [21] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2916 [inlined]
 [22] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572
 [23] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548
 [24] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
 [25] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161
 [26] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
 [27] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined]
 [28] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159
 [29] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:237
 [30] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [31] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [32] _start()
    @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:228

PkgEval failed after 69.76s: there were unidentified errors