Package evaluation to test NonNegLeastSquares on Julia 1.14.0-DEV.1372 (893635dc59*) started at 2025-12-16T12:28:46.986


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 9.63s


################################################################################
# Installation
#

Installing NonNegLeastSquares...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [b7351bd1] + NonNegLeastSquares v0.4.1
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [b7351bd1] + NonNegLeastSquares v0.4.1
  [56f22d72] + Artifacts v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [8e850b90] + libblastrampoline_jll v5.15.0+0

Installation completed after 0.92s


################################################################################
# Precompilation
#

ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:10
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/precompile.jl:6

caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:7
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577

Precompilation failed after 13.38s



################################################################################
# Testing
#

     Testing NonNegLeastSquares
      Status `/tmp/jl_BYJgTU/Project.toml`
  [b7351bd1] NonNegLeastSquares v0.4.1
  [438e738f] PyCall v1.96.4
  [37e2e46d] LinearAlgebra v1.13.0
  [9a3f8284] Random v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_BYJgTU/Manifest.toml`
  [8f4d0f93] Conda v1.10.3
  [682c06a0] JSON v1.3.0
  [1914dd2f] MacroTools v0.5.16
  [b7351bd1] NonNegLeastSquares v0.4.1
  [69de0a69] Parsers v2.8.3
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.0
  [438e738f] PyCall v1.96.4
  [ec057cc2] StructUtils v2.6.0
  [81def892] VersionParsing v1.3.0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [b27032c2] LibCURL v1.0.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.13.0
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.17.0+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.12.2
  [4536629a] OpenBLAS_jll v0.3.29+0
  [458c3c95] OpenSSL_jll v3.5.4+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [83775a58] Zlib_jll v1.3.1+2
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850b90] libblastrampoline_jll v5.15.0+0
  [8e850ede] nghttp2_jll v1.68.0+1
     Testing Running tests...
┌ Warning: The call to compilecache failed to create a usable precompiled cache file for PyCall [438e738f-606a-5dbb-bf0a-cddfbfd45ab0]
│   exception = Required dependency Base.PkgId(Base.UUID("81def892-9a0e-5fdd-b105-ffc91e053289"), "VersionParsing") failed to load from a cache file.
└ @ Base loading.jl:2891
┌ Warning: The call to compilecache failed to create a usable precompiled cache file for Conda [8f4d0f93-b110-5947-807f-2305c1781a2d]
│   exception = Required dependency Base.PkgId(Base.UUID("21216c6a-2e73-6563-6e65-726566657250"), "Preferences") failed to load from a cache file.
└ @ Base loading.jl:2891
[ Info: Installing scipy.optimize via the Conda scipy package...
[ Info: Running `conda install -q -y scipy` in root environment
Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/pkgeval/.julia/conda/3/x86_64

  added / updated specs:
    - scipy


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    scipy-1.16.3               |  py312h7a1785b_1        16.0 MB  conda-forge
    ------------------------------------------------------------
                                           Total:        16.0 MB

The following NEW packages will be INSTALLED:

  scipy              conda-forge/linux-64::scipy-1.16.3-py312h7a1785b_1 


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
use_parallel = false
testing f = Main.nnls
Unreachable reached at 0x729d48793671

[269] signal 4 (2): Illegal instruction
in expression starting at /home/pkgeval/.julia/packages/NonNegLeastSquares/DRyA5/test/runtests.jl:83
copy at /home/pkgeval/.julia/packages/PyCall/1gn3u/src/pyarray.jl:150 [inlined]
pyocopy at /home/pkgeval/.julia/packages/PyCall/1gn3u/src/pyarray.jl:252
unknown function (ip: 0xa1a8) at (unknown file)
unknown function (ip: 0x729d3e4d494f) at (unknown file)
Allocations: 46259241 (Pool: 46258921; Big: 320); GC: 30

Testing failed after 200.85s

ERROR: LoadError: Package NonNegLeastSquares errored during testing (received signal: 4)
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3067
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2916 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:237
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [14] _start()
    @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:228

PkgEval crashed after 242.04s: an unreachable instruction was executed


################################################################################
# Bug reporting
#

The package crashed during testing (reason=unreachable), but PkgEval was unable to
reproduce the crash under rr (status=fail, reason=precompile).

For debugging, here is the tail end of the rr log:

>   [4536629a] OpenBLAS_jll v0.3.29+0
>   [458c3c95] OpenSSL_jll v3.5.4+0
>   [bea87d4a] SuiteSparse_jll v7.10.1+0
>   [83775a58] Zlib_jll v1.3.1+2
>   [3161d3a3] Zstd_jll v1.5.7+1
>   [8e850b90] libblastrampoline_jll v5.15.0+0
>   [8e850ede] nghttp2_jll v1.68.0+1
>      Testing Running tests...
>   Activating project at `~/.julia/environments/pkgeval`
> ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("a8b33d9f-0f8b-5197-9986-f85cbaa50c6c"), "GDB_jll") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0)
> Stacktrace:
>   [1] error(s::String)
>     @ Base ./error.jl:44
>   [2] __require_prelocked(pkg::Base.PkgId, env::String)
>     @ Base ./loading.jl:2813
>   [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
>     @ Base ./loading.jl:2665
>   [4] macro expansion
>     @ ./loading.jl:2593 [inlined]
>   [5] macro expansion
>     @ ./lock.jl:376 [inlined]
>   [6] __require(into::Module, mod::Symbol)
>     @ Base ./loading.jl:2557
>   [7] require
>     @ ./loading.jl:2533 [inlined]
>   [8] eval_import_path
>     @ ./module.jl:36 [inlined]
>   [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
>     @ Base ./module.jl:60
>  [10] _eval_using
>     @ ./module.jl:137 [inlined]
>  [11] _eval_using(to::Module, path::Expr)
>     @ Base ./module.jl:137
>  [12] top-level scope
>     @ ~/.julia/packages/BugReporting/Jc1la/src/BugReporting.jl:20
>  [13] include(mod::Module, _path::String)
>     @ Base ./Base.jl:309
>  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
>     @ Base ./loading.jl:3250
>  [15] top-level scope
>     @ stdin:5
>  [16] eval(m::Module, e::Any)
>     @ Core ./boot.jl:489
>  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
>     @ Base ./loading.jl:3092
>  [18] include_string
>     @ ./loading.jl:3102 [inlined]
>  [19] exec_options(opts::Base.JLOptions)
>     @ Base ./client.jl:342
>  [20] _start()
>     @ Base ./client.jl:577
> in expression starting at /home/pkgeval/.julia/packages/BugReporting/Jc1la/src/BugReporting.jl:1
> in expression starting at stdin:5
> 
>   1 dependency had output during precompilation:
> ┌ BugReporting
> │  [Output was shown above]
> └  
> ERROR: LoadError: The following 1 package failed to precompile:
> 
> BugReporting 
> Failed to precompile BugReporting [bcf9a6e7-4020-453c-b88e-690564246bb8] to "/home/pkgeval/.julia/compiled/v1.14/BugReporting/jl_lKqPDV" (ProcessExited(1)).
> 
> in expression starting at /home/pkgeval/bugreport.jl:7
> 
> Testing failed after 117.83s
> 
> ERROR: LoadError: Package NonNegLeastSquares errored during testing
> Stacktrace:
>   [1] pkgerror(msg::String)
>     @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
>   [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
>     @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3067
>   [3] test
>     @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2916 [inlined]
>   [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
>     @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572
>   [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
>     @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548
>   [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
>     @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
>   [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
>     @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161
>   [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
>     @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
>   [9] test
>     @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined]
>  [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
>     @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159
>  [11] top-level scope
>     @ /PkgEval.jl/scripts/evaluate.jl:235
>  [12] include(mod::Module, _path::String)
>     @ Base ./Base.jl:309
>  [13] exec_options(opts::Base.JLOptions)
>     @ Base ./client.jl:344
>  [14] _start()
>     @ Base ./client.jl:577
> in expression starting at /PkgEval.jl/scripts/evaluate.jl:228
> 
> PkgEval failed after 164.93s: package fails to precompile