Package evaluation to test NeighborJoining on Julia 1.14.0-DEV.1372 (893635dc59*) started at 2025-12-16T12:31:14.756


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 9.45s


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# Installation
#

Installing NeighborJoining...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [3f465f53] + NeighborJoining v0.2.1
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [dce04be8] + ArgCheck v2.5.0
  [3f465f53] + NeighborJoining v0.2.1
  [de0858da] + Printf v1.11.0
  [4ec0a83e] + Unicode v1.11.0

Installation completed after 0.86s


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# Precompilation
#

ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:10
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/precompile.jl:6

caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:7
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577

Precompilation failed after 12.61s



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# Testing
#

     Testing NeighborJoining
      Status `/tmp/jl_ww0JzA/Project.toml`
  [4c88cf16] Aqua v0.8.14
  [3f465f53] NeighborJoining v0.2.1
  [b0a14db8] NewickTree v0.4.0
  [1bc83da4] SafeTestsets v0.1.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_ww0JzA/Manifest.toml`
  [1520ce14] AbstractTrees v0.4.5
  [4c88cf16] Aqua v0.8.14
  [dce04be8] ArgCheck v2.5.0
  [34da2185] Compat v4.18.1
  [3f465f53] NeighborJoining v0.2.1
  [b0a14db8] NewickTree v0.4.0
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.0
  [3cdcf5f2] RecipesBase v1.3.4
  [1bc83da4] SafeTestsets v0.1.0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [b27032c2] LibCURL v1.0.0
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.14.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [f489334b] StyledStrings v1.13.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.17.0+0
  [e37daf67] LibGit2_jll v1.9.2+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.12.2
  [458c3c95] OpenSSL_jll v3.5.4+0
  [efcefdf7] PCRE2_jll v10.47.0+0
  [83775a58] Zlib_jll v1.3.1+2
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850ede] nghttp2_jll v1.68.0+1
  [3f19e933] p7zip_jll v17.7.0+0
     Testing Running tests...
┌ Info: GROUP is 
└   GROUP = "All"
┌ Warning: The call to compilecache failed to create a usable precompiled cache file for NewickTree [b0a14db8-6308-4ebc-8917-f72cd81f5094]
│   exception = Required dependency Base.PkgId(Base.UUID("21216c6a-2e73-6563-6e65-726566657250"), "Preferences") failed to load from a cache file.
└ @ Base loading.jl:2891
Test Summary:          | Pass  Total   Time
RegularNeighborJoining |  112    112  23.9s
Test Summary:       | Pass  Broken  Total  Time
FastNeighborJoining |   22       4     26  9.7s
Test Summary: | Pass  Total   Time
Aqua Q/A      |    9      9  38.7s
 72.858157 seconds (42.40 M allocations: 2.656 GiB, 2.40% gc time, 58.56% compilation time)
     Testing NeighborJoining tests passed 

Testing completed after 82.59s

PkgEval succeeded after 114.82s