Package evaluation to test MzXML on Julia 1.14.0-DEV.1372 (893635dc59*) started at 2025-12-16T14:39:11.872 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 8.93s ################################################################################ # Installation # Installing MzXML... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [cb69de98] + MzXML v0.2.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [39de3d68] + AxisArrays v0.4.8 [944b1d66] + CodecZlib v0.7.8 [8197267c] + IntervalSets v0.7.13 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.1 [9c8b4983] + LightXML v0.9.3 [0ec0bfde] + MzCore v0.1.1 [cb69de98] + MzXML v0.2.1 [21216c6a] + Preferences v1.5.0 [92933f4c] + ProgressMeter v1.11.0 [b3c3ace0] + RangeArrays v0.3.2 [3bb67fe8] + TranscodingStreams v0.11.3 [1986cc42] + Unitful v1.27.0 [94ce4f54] + Libiconv_jll v1.18.0+0 [02c8fc9c] + XML2_jll v2.15.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 4.11s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 Precompilation failed after 11.84s ################################################################################ # Testing # Testing MzXML Status `/tmp/jl_7NDwRW/Project.toml` [39de3d68] AxisArrays v0.4.8 [944b1d66] CodecZlib v0.7.8 [9c8b4983] LightXML v0.9.3 [0ec0bfde] MzCore v0.1.1 [cb69de98] MzXML v0.2.1 [92933f4c] ProgressMeter v1.11.0 [1986cc42] Unitful v1.27.0 [2a0f44e3] Base64 v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_7NDwRW/Manifest.toml` [39de3d68] AxisArrays v0.4.8 [944b1d66] CodecZlib v0.7.8 [8197267c] IntervalSets v0.7.13 [c8e1da08] IterTools v1.10.0 [692b3bcd] JLLWrappers v1.7.1 [9c8b4983] LightXML v0.9.3 [0ec0bfde] MzCore v0.1.1 [cb69de98] MzXML v0.2.1 [21216c6a] Preferences v1.5.0 [92933f4c] ProgressMeter v1.11.0 [b3c3ace0] RangeArrays v0.3.2 [3bb67fe8] TranscodingStreams v0.11.3 [1986cc42] Unitful v1.27.0 [94ce4f54] Libiconv_jll v1.18.0+0 [02c8fc9c] XML2_jll v2.15.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 Testing Running tests... ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for MzXML [cb69de98-8f9f-5947-b504-cdcc19a34020] │ exception = Required dependency Base.PkgId(Base.UUID("9c8b4983-aa76-5018-a973-4c85ecc9e179"), "LightXML") failed to load from a cache file. └ @ Base loading.jl:2891 ┌ Warning: `ProgressUnknown(desc::AbstractString; kwargs...)` is deprecated, use `ProgressUnknown(; desc = desc, kwargs...)` instead. │ caller = ip:0x0 └ @ Core :-1 Number of scans read: 2 Time: 0:00:00 Number of scans read: 2 Time: 0:00:00 Number of scans read: 2 Time: 0:00:00 Number of scans read: 2 Time: 0:00:00 Test Summary: | Pass Total Time MzXML | 22 22 8.9s Testing MzXML tests passed Testing completed after 25.82s PkgEval succeeded after 76.24s