Package evaluation to test MolecularTrajectories on Julia 1.14.0-DEV.1372 (893635dc59*) started at 2025-12-16T13:24:38.477


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 10.06s


################################################################################
# Installation
#

Installing MolecularTrajectories...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [c3751834] + MolecularTrajectories v2.1.0
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [aea3f91d] + MolecularBoxes v1.0.1
  [c3751834] + MolecularTrajectories v2.1.0
⌅ [90137ffa] + StaticArrays v0.12.6
  [10745b16] + Statistics v1.11.1
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [f489334b] + StyledStrings v1.13.0
  [8dfed614] + Test v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [8e850b90] + libblastrampoline_jll v5.15.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 1.17s


################################################################################
# Precompilation
#

ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:10
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/precompile.jl:6

caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:7
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577

Precompilation failed after 13.65s



################################################################################
# Testing
#

     Testing MolecularTrajectories
      Status `/tmp/jl_17POoQ/Project.toml`
  [aea3f91d] MolecularBoxes v1.0.1
  [57484d9e] MolecularTopologies v1.1.2
  [c3751834] MolecularTrajectories v2.1.0
⌅ [90137ffa] StaticArrays v0.12.6
  [de0858da] Printf v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_17POoQ/Manifest.toml`
  [aea3f91d] MolecularBoxes v1.0.1
  [57484d9e] MolecularTopologies v1.1.2
  [c3751834] MolecularTrajectories v2.1.0
⌅ [90137ffa] StaticArrays v0.12.6
  [10745b16] Statistics v1.11.1
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [f489334b] StyledStrings v1.13.0
  [8dfed614] Test v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] OpenBLAS_jll v0.3.29+0
  [8e850b90] libblastrampoline_jll v5.15.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
WARNING: Imported binding Base.@_pure_meta was undeclared at import time during import to StaticArrays.
WARNING: Constructor for type "Tuple" was extended in `StaticArrays` without explicit qualification or import.
  NOTE: Assumed "Tuple" refers to `Base.Tuple`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Tuple end`.
  Hint: To silence the warning, qualify `Tuple` as `Base.Tuple` in the method signature or explicitly `import Base: Tuple`.
WARNING: Constructor for type "Array" was extended in `StaticArrays` without explicit qualification or import.
  NOTE: Assumed "Array" refers to `Base.Array`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Array end`.
  Hint: To silence the warning, qualify `Array` as `Base.Array` in the method signature or explicitly `import Base: Array`.

  1 dependency had output during precompilation:
┌ StaticArrays
│  [Output was shown above]
└  
┌ Warning: The call to compilecache failed to create a usable precompiled cache file for StaticArrays [90137ffa-7385-5640-81b9-e52037218182]
│   exception = Required dependency Base.PkgId(Base.UUID("10745b16-79ce-11e8-11f9-7d13ad32a3b2"), "Statistics") failed to load from a cache file.
└ @ Base loading.jl:2891
WARNING: Imported binding Base.@_pure_meta was undeclared at import time during import to StaticArrays.
WARNING: Constructor for type "Tuple" was extended in `StaticArrays` without explicit qualification or import.
  NOTE: Assumed "Tuple" refers to `Base.Tuple`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Tuple end`.
  Hint: To silence the warning, qualify `Tuple` as `Base.Tuple` in the method signature or explicitly `import Base: Tuple`.
WARNING: Constructor for type "Array" was extended in `StaticArrays` without explicit qualification or import.
  NOTE: Assumed "Array" refers to `Base.Array`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Array end`.
  Hint: To silence the warning, qualify `Array` as `Base.Array` in the method signature or explicitly `import Base: Array`.
WARNING: Imported binding Base.@_pure_meta was undeclared at import time during import to StaticArrays.
WARNING: Constructor for type "Tuple" was extended in `StaticArrays` without explicit qualification or import.
  NOTE: Assumed "Tuple" refers to `Base.Tuple`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Tuple end`.
  Hint: To silence the warning, qualify `Tuple` as `Base.Tuple` in the method signature or explicitly `import Base: Tuple`.
WARNING: Constructor for type "Array" was extended in `StaticArrays` without explicit qualification or import.
  NOTE: Assumed "Array" refers to `Base.Array`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Array end`.
  Hint: To silence the warning, qualify `Array` as `Base.Array` in the method signature or explicitly `import Base: Array`.
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("90137ffa-7385-5640-81b9-e52037218182"), "StaticArrays") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2813
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2665
  [4] macro expansion
    @ ./loading.jl:2593 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2557
  [7] require
    @ ./loading.jl:2533 [inlined]
  [8] eval_import_path
    @ ./module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [10] _eval_using
    @ ./module.jl:137 [inlined]
 [11] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [12] top-level scope
    @ ~/.julia/packages/MolecularBoxes/nRcsB/src/MolecularBoxes.jl:7
 [13] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3250
 [15] top-level scope
    @ stdin:5
 [16] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3092
 [18] include_string
    @ ./loading.jl:3102 [inlined]
 [19] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [20] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/MolecularBoxes/nRcsB/src/MolecularBoxes.jl:2
in expression starting at stdin:5

  2 dependencies had output during precompilation:
┌ StaticArrays
│  WARNING: Imported binding Base.@_pure_meta was undeclared at import time during import to StaticArrays.
│  WARNING: Constructor for type "Tuple" was extended in `StaticArrays` without explicit qualification or import.
│    NOTE: Assumed "Tuple" refers to `Base.Tuple`. This behavior is deprecated and may differ in future versions.
│    NOTE: This behavior may have differed in Julia versions prior to 1.12.
│    Hint: If you intended to create a new generic function of the same name, use `function Tuple end`.
│    Hint: To silence the warning, qualify `Tuple` as `Base.Tuple` in the method signature or explicitly `import Base: Tuple`.
│  WARNING: Constructor for type "Array" was extended in `StaticArrays` without explicit qualification or import.
│    NOTE: Assumed "Array" refers to `Base.Array`. This behavior is deprecated and may differ in future versions.
│    NOTE: This behavior may have differed in Julia versions prior to 1.12.
│    Hint: If you intended to create a new generic function of the same name, use `function Array end`.
│    Hint: To silence the warning, qualify `Array` as `Base.Array` in the method signature or explicitly `import Base: Array`.
└  
┌ MolecularBoxes
│  [Output was shown above]
└  
ERROR: LoadError: The following 1 package failed to precompile:

MolecularBoxes 
Failed to precompile MolecularBoxes [aea3f91d-3b18-5712-a377-5bd7ed4ed15b] to "/home/pkgeval/.julia/compiled/v1.14/MolecularBoxes/jl_tNZveG" (ProcessExited(1)).

in expression starting at /home/pkgeval/.julia/packages/MolecularTrajectories/7h18N/test/runtests.jl:3

Testing failed after 28.58s

ERROR: LoadError: Package MolecularTrajectories errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3067
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2916 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:237
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [14] _start()
    @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:228

PkgEval failed after 70.35s: package fails to precompile