Package evaluation to test MolecularBoxes on Julia 1.14.0-DEV.1372 (893635dc59*) started at 2025-12-16T13:20:38.214 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 9.72s ################################################################################ # Installation # Installing MolecularBoxes... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [aea3f91d] + MolecularBoxes v1.0.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [aea3f91d] + MolecularBoxes v1.0.1 ⌅ [90137ffa] + StaticArrays v0.12.6 [10745b16] + Statistics v1.11.1 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [f489334b] + StyledStrings v1.13.0 [8dfed614] + Test v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 1.06s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 Precompilation failed after 13.12s ################################################################################ # Testing # Testing MolecularBoxes Status `/tmp/jl_gc6Avg/Project.toml` [aea3f91d] MolecularBoxes v1.0.1 ⌅ [90137ffa] StaticArrays v0.12.6 [8dfed614] Test v1.11.0 Status `/tmp/jl_gc6Avg/Manifest.toml` [aea3f91d] MolecularBoxes v1.0.1 ⌅ [90137ffa] StaticArrays v0.12.6 [10745b16] Statistics v1.11.1 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.13.0 [8dfed614] Test v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... WARNING: Imported binding Base.@_pure_meta was undeclared at import time during import to StaticArrays. WARNING: Constructor for type "Tuple" was extended in `StaticArrays` without explicit qualification or import.  NOTE: Assumed "Tuple" refers to `Base.Tuple`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Tuple end`.  Hint: To silence the warning, qualify `Tuple` as `Base.Tuple` in the method signature or explicitly `import Base: Tuple`. WARNING: Constructor for type "Array" was extended in `StaticArrays` without explicit qualification or import.  NOTE: Assumed "Array" refers to `Base.Array`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Array end`.  Hint: To silence the warning, qualify `Array` as `Base.Array` in the method signature or explicitly `import Base: Array`. 1 dependency had output during precompilation: ┌ StaticArrays │ WARNING: Imported binding Base.@_pure_meta was undeclared at import time during import to StaticArrays. │ WARNING: Constructor for type "Tuple" was extended in `StaticArrays` without explicit qualification or import. │ NOTE: Assumed "Tuple" refers to `Base.Tuple`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Tuple end`. │ Hint: To silence the warning, qualify `Tuple` as `Base.Tuple` in the method signature or explicitly `import Base: Tuple`. │ WARNING: Constructor for type "Array" was extended in `StaticArrays` without explicit qualification or import. │ NOTE: Assumed "Array" refers to `Base.Array`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Array end`. │ Hint: To silence the warning, qualify `Array` as `Base.Array` in the method signature or explicitly `import Base: Array`. └ ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for MolecularBoxes [aea3f91d-3b18-5712-a377-5bd7ed4ed15b] │ exception = Required dependency Base.PkgId(Base.UUID("10745b16-79ce-11e8-11f9-7d13ad32a3b2"), "Statistics") failed to load from a cache file. └ @ Base loading.jl:2891 WARNING: Imported binding Base.@_pure_meta was undeclared at import time during import to StaticArrays. WARNING: Constructor for type "Tuple" was extended in `StaticArrays` without explicit qualification or import.  NOTE: Assumed "Tuple" refers to `Base.Tuple`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Tuple end`.  Hint: To silence the warning, qualify `Tuple` as `Base.Tuple` in the method signature or explicitly `import Base: Tuple`. WARNING: Constructor for type "Array" was extended in `StaticArrays` without explicit qualification or import.  NOTE: Assumed "Array" refers to `Base.Array`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Array end`.  Hint: To silence the warning, qualify `Array` as `Base.Array` in the method signature or explicitly `import Base: Array`. 1 dependency had output during precompilation: ┌ StaticArrays │ [Output was shown above] └ ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for StaticArrays [90137ffa-7385-5640-81b9-e52037218182] │ exception = Required dependency Base.PkgId(Base.UUID("10745b16-79ce-11e8-11f9-7d13ad32a3b2"), "Statistics") failed to load from a cache file. └ @ Base loading.jl:2891 WARNING: Imported binding Base.@_pure_meta was undeclared at import time during import to StaticArrays. WARNING: Constructor for type "Tuple" was extended in `StaticArrays` without explicit qualification or import. NOTE: Assumed "Tuple" refers to `Base.Tuple`. This behavior is deprecated and may differ in future versions. NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Tuple end`. Hint: To silence the warning, qualify `Tuple` as `Base.Tuple` in the method signature or explicitly `import Base: Tuple`. WARNING: Constructor for type "Array" was extended in `StaticArrays` without explicit qualification or import. NOTE: Assumed "Array" refers to `Base.Array`. This behavior is deprecated and may differ in future versions. NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Array end`. Hint: To silence the warning, qualify `Array` as `Base.Array` in the method signature or explicitly `import Base: Array`. Test Summary: | Pass Total Time Test Box constructor | 5 5 1.9s Test Summary: | Pass Total Time Test getters | 3 3 0.2s Test Summary: | Pass Total Time test dimensions/coordinates access functions | 1 1 0.0s Test Summary: | Pass Total Time Test separation | 3 3 1.0s ┌ Warning: `a::StaticArray + b::Number` is deprecated, use `a .+ b` instead. │ caller = center_of_mass(pos::Vector{SVector{3, Float64}}, box::Box{SVector{3, Float64}, 3, (true, true, true)}; weights::Vector{Float64}) at center_of_mass.jl:31 └ @ Core ~/.julia/packages/MolecularBoxes/nRcsB/src/center_of_mass.jl:31 Test Summary: | Pass Total Time Test centre-of-mass calculation | 3 3 3.4s Testing MolecularBoxes tests passed Testing completed after 33.71s PkgEval succeeded after 66.82s