Package evaluation to test IsotopicCalc on Julia 1.14.0-DEV.1372 (893635dc59*) started at 2025-12-16T13:20:18.699


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 9.28s


################################################################################
# Installation
#

Installing IsotopicCalc...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [5554e927] + IsotopicCalc v0.6.2
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [5554e927] + IsotopicCalc v0.6.2
  [682c06a0] + JSON v1.3.0
  [69de0a69] + Parsers v2.8.3
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [ec057cc2] + StructUtils v2.6.0
  [ade2ca70] + Dates v1.11.0
  [56ddb016] + Logging v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [fa267f1f] + TOML v1.0.3
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0

Installation completed after 3.77s


################################################################################
# Precompilation
#

ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:10
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/precompile.jl:6

caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:7
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577

Precompilation failed after 12.98s



################################################################################
# Testing
#

     Testing IsotopicCalc
      Status `/tmp/jl_CIb3ZZ/Project.toml`
  [5554e927] IsotopicCalc v0.6.2
  [682c06a0] JSON v1.3.0
  [de0858da] Printf v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_CIb3ZZ/Manifest.toml`
  [5554e927] IsotopicCalc v0.6.2
  [682c06a0] JSON v1.3.0
  [69de0a69] Parsers v2.8.3
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.0
  [ec057cc2] StructUtils v2.6.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [f489334b] StyledStrings v1.13.0
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
     Testing Running tests...
┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead.
│   caller = parse_formula at IsotopicPattern.jl:189 [inlined]
└ @ Core ~/.julia/packages/IsotopicCalc/5s3HJ/src/IsotopicPattern.jl:189
┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead.
│   caller = parse_formula at IsotopicPattern.jl:189 [inlined]
└ @ Core ~/.julia/packages/IsotopicCalc/5s3HJ/src/IsotopicPattern.jl:189
Matching formulas:
 C3H6O	m/z: 58.041865	ppm: 0.61
Matching formulas:
 CH4O	[M+H]+	m/z: 33.033491	ppm: 15.4
Matching formulas:
 C3H6O	m/z: 58.041865	ppm: 0.61
Matching formulas:
 C3H6O	m/z: 58.041865	ppm: 0.61
 C2H6N2	m/z: 58.053098	ppm: -192.9
 CH2N2O	m/z: 58.016713	ppm: 434.14
 C4H10	m/z: 58.07825	ppm: -625.89
 C2H2O2	m/z: 58.005479	ppm: 627.88
Matching formulas:
 CO2	[M+H]+	m/z: 44.997106	ppm: 64.32

Formula:  C3H6O.H+
----------------------------
Mass [amu]     Abundance [%]
----------------------------
59.0491        100.0000
60.0525        3.2447
60.0534        0.0381
60.0554        0.0805
61.0534        0.2055
61.0559        0.0351
62.0567        0.0067
Found 7 isotopic masses for 1.0e-5 abundance limit.
Test Summary:   | Pass  Total   Time
IsotopicCalc.jl |   96     96  14.9s
     Testing IsotopicCalc tests passed 

Testing completed after 28.51s

PkgEval succeeded after 64.99s