Package evaluation to test GCIdentifier on Julia 1.14.0-DEV.1372 (893635dc59*) started at 2025-12-16T20:31:11.213 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 9.32s ################################################################################ # Installation # Installing GCIdentifier... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [b7ea765e] + GCIdentifier v0.3.10 Updating `~/.julia/environments/v1.14/Manifest.toml` [ec485272] + ArnoldiMethod v0.4.0 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.1.0 [864edb3b] + DataStructures v0.19.3 [8bb1440f] + DelimitedFiles v1.9.1 [411431e0] + Extents v0.1.6 [53c48c17] + FixedPointNumbers v0.8.5 [b7ea765e] + GCIdentifier v0.3.10 [5c1252a2] + GeometryBasics v0.5.10 [86223c79] + Graphs v1.13.2 [d25df0c9] + Inflate v0.1.5 [8197267c] + IntervalSets v0.7.13 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [1914dd2f] + MacroTools v0.5.16 [20f20a25] + MakieCore v0.10.0 ⌅ [6c89ec66] + MolecularGraph v0.21.1 [510215fc] + Observables v0.5.5 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [189a3867] + Reexport v1.2.2 [699a6c99] + SimpleTraits v0.9.5 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [69024149] + StringEncodings v0.3.7 [ddb6d928] + YAML v0.4.16 [5ae413db] + EarCut_jll v2.2.4+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [f6050b86] + coordgenlibs_jll v3.0.2+0 [172afb32] + libinchi_jll v1.6.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.6s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 Precompilation failed after 13.17s ################################################################################ # Testing # Testing GCIdentifier Status `/tmp/jl_Blpz3k/Project.toml` [fa4ea961] ChemicalIdentifiers v0.1.10 [7c7805af] Clapeyron v0.6.19 [861a8166] Combinatorics v1.1.0 [b7ea765e] GCIdentifier v0.3.10 ⌅ [6c89ec66] MolecularGraph v0.21.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_Blpz3k/Manifest.toml` [7d9f7c33] Accessors v0.1.43 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [69666777] Arrow v2.8.0 [31f734f8] ArrowTypes v2.3.0 [c3b6d118] BitIntegers v0.3.6 [a134a8b2] BlackBoxOptim v0.6.3 [a9c8d775] CPUTime v1.0.0 [336ed68f] CSV v0.10.15 [fa4ea961] ChemicalIdentifiers v0.1.10 [7c7805af] Clapeyron v0.6.19 [5ba52731] CodecLz4 v0.4.6 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.7 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.1.0 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [e2ba6199] ExprTools v0.1.10 [411431e0] Extents v0.1.6 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v1.3.0 [b7ea765e] GCIdentifier v0.3.10 [5c1252a2] GeometryBasics v0.5.10 [86223c79] Graphs v1.13.2 [34004b35] HypergeometricFunctions v0.3.28 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.5 [8197267c] IntervalSets v0.7.13 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [20f20a25] MakieCore v0.10.0 [e1d29d7a] Missings v1.2.0 [78c3b35d] Mocking v0.8.1 ⌅ [6c89ec66] MolecularGraph v0.21.1 [337daf1e] NLSolvers v0.5.0 [77ba4419] NaNMath v1.1.3 [510215fc] Observables v0.5.5 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [7713531c] PackedVectorsOfVectors v0.1.2 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [f2b01f46] Roots v2.2.10 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.8 [699a6c99] SimpleTraits v0.9.5 [a2af1166] SortingAlgorithms v1.2.2 [d4ead438] SpatialIndexing v0.1.6 [276daf66] SpecialFunctions v2.6.1 [91464d47] StableTasks v0.1.7 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.9 [4c63d2b9] StatsFuns v1.5.2 [69024149] StringEncodings v0.3.7 [354b36f9] StringViews v1.3.6 [856f2bd8] StructTypes v1.11.0 [dc5dba14] TZJData v1.5.0+2025b [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [f269a46b] TimeZones v1.22.2 [3bb67fe8] TranscodingStreams v0.11.3 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [ddb6d928] YAML v0.4.16 [5ae413db] EarCut_jll v2.2.4+0 [94ce4f54] Libiconv_jll v1.18.0+0 [5ced341a] Lz4_jll v1.10.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [f6050b86] coordgenlibs_jll v3.0.2+0 [172afb32] libinchi_jll v1.6.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for GCIdentifier [b7ea765e-cbac-4e4a-9b0d-5427cc302506] │ exception = Required dependency Base.PkgId(Base.UUID("510215fc-4207-5dde-b226-833fc4488ee2"), "Observables") failed to load from a cache file. └ @ Base loading.jl:2891 ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for MolecularGraph [6c89ec66-9cd8-5372-9f91-fabc50dd27fd] │ exception = Required dependency Base.PkgId(Base.UUID("510215fc-4207-5dde-b226-833fc4488ee2"), "Observables") failed to load from a cache file. └ @ Base loading.jl:2891 ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for MakieCore [20f20a25-4f0e-4fdf-b5d1-57303727442b] │ exception = Required dependency Base.PkgId(Base.UUID("510215fc-4207-5dde-b226-833fc4488ee2"), "Observables") failed to load from a cache file. └ @ Base loading.jl:2891 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("20f20a25-4f0e-4fdf-b5d1-57303727442b"), "MakieCore") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2813  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2665  [4] macro expansion  @ ./loading.jl:2593 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2557  [7] require  @ ./loading.jl:2533 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base ./module.jl:101  [11] top-level scope  @ ~/.julia/packages/MolecularGraph/2HC5h/src/MolecularGraph.jl:213  [12] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3250  [14] top-level scope  @ stdin:5  [15] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3092  [17] include_string  @ ./loading.jl:3102 [inlined]  [18] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [19] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MolecularGraph/2HC5h/src/MolecularGraph.jl:6 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("6c89ec66-9cd8-5372-9f91-fabc50dd27fd"), "MolecularGraph") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2813  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2665  [4] macro expansion  @ ./loading.jl:2593 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2557  [7] require  @ ./loading.jl:2533 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)  @ Base ./module.jl:111  [10] top-level scope  @ ~/.julia/packages/GCIdentifier/55Km6/src/GCIdentifier.jl:13  [11] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [12] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3250  [13] top-level scope  @ stdin:5  [14] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3092  [16] include_string  @ ./loading.jl:3102 [inlined]  [17] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [18] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/GCIdentifier/55Km6/src/GCIdentifier.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("b7ea765e-cbac-4e4a-9b0d-5427cc302506"), "GCIdentifier") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2813  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2665  [4] macro expansion  @ ./loading.jl:2593 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2557  [7] require  @ ./loading.jl:2533 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using  @ ./module.jl:137 [inlined]  [11] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [12] top-level scope  @ ~/.julia/packages/GCIdentifier/55Km6/ext/GCIdentifierClapeyronExt.jl:4  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3250  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3092  [18] include_string  @ ./loading.jl:3102 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [20] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/GCIdentifier/55Km6/ext/GCIdentifierClapeyronExt.jl:1 in expression starting at stdin:5 3 dependencies had output during precompilation: ┌ MolecularGraph │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("20f20a25-4f0e-4fdf-b5d1-57303727442b"), "MakieCore") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:44 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2813 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2665 │ [4] macro expansion │ @ ./loading.jl:2593 [inlined] │ [5] macro expansion │ @ ./lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2557 │ [7] require │ @ ./loading.jl:2533 [inlined] │ [8] eval_import_path │ @ ./module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base ./module.jl:60 │ [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) │ @ Base ./module.jl:101 │ [11] top-level scope │ @ ~/.julia/packages/MolecularGraph/2HC5h/src/MolecularGraph.jl:213 │ [12] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3250 │ [14] top-level scope │ @ stdin:5 │ [15] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:3092 │ [17] include_string │ @ ./loading.jl:3102 [inlined] │ [18] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:342 │ [19] _start() │ @ Base ./client.jl:577 │ in expression starting at /home/pkgeval/.julia/packages/MolecularGraph/2HC5h/src/MolecularGraph.jl:6 │ in expression starting at stdin:5 └ ┌ GCIdentifier → GCIdentifierClapeyronExt │ [Output was shown above] └ ┌ GCIdentifier │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("6c89ec66-9cd8-5372-9f91-fabc50dd27fd"), "MolecularGraph") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:44 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2813 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2665 │ [4] macro expansion │ @ ./loading.jl:2593 [inlined] │ [5] macro expansion │ @ ./lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2557 │ [7] require │ @ ./loading.jl:2533 [inlined] │ [8] eval_import_path │ @ ./module.jl:36 [inlined] │ [9] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr) │ @ Base ./module.jl:111 │ [10] top-level scope │ @ ~/.julia/packages/GCIdentifier/55Km6/src/GCIdentifier.jl:13 │ [11] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [12] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3250 │ [13] top-level scope │ @ stdin:5 │ [14] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:3092 │ [16] include_string │ @ ./loading.jl:3102 [inlined] │ [17] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:342 │ [18] _start() │ @ Base ./client.jl:577 │ in expression starting at /home/pkgeval/.julia/packages/GCIdentifier/55Km6/src/GCIdentifier.jl:1 │ in expression starting at stdin:5 └ ┌ Error: Error during loading of extension GCIdentifierClapeyronExt of GCIdentifier, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 3 packages failed to precompile: │ │ MolecularGraph │ Failed to precompile MolecularGraph [6c89ec66-9cd8-5372-9f91-fabc50dd27fd] to "/home/pkgeval/.julia/compiled/v1.14/MolecularGraph/jl_MIEq68" (ProcessExited(1)). │ │ GCIdentifierClapeyronExt │ Failed to precompile GCIdentifierClapeyronExt [5bf54e45-03c4-5204-aa89-a0d1ddf00180] to "/home/pkgeval/.julia/compiled/v1.14/GCIdentifierClapeyronExt/jl_iN35xF" (ProcessExited(1)). │ │ GCIdentifier │ Failed to precompile GCIdentifier [b7ea765e-cbac-4e4a-9b0d-5427cc302506] to "/home/pkgeval/.julia/compiled/v1.14/GCIdentifier/jl_dq59US" (ProcessExited(1)). │ └ @ Base loading.jl:1721 Extension - Clapeyron: Error During Test at /home/pkgeval/.julia/packages/GCIdentifier/55Km6/test/test_ext_clapeyron.jl:3 Got exception outside of a @test MethodError: no method matching get_grouplist(::Type{JobackIdeal}) The function `get_grouplist` exists, but no method is defined for this combination of argument types. Closest candidates are: get_grouplist(!Matched::Vector{GCPair}) @ GCIdentifier ~/.julia/packages/GCIdentifier/55Km6/src/group_search.jl:92 Stacktrace: [1] get_groups_from_smiles(smiles::String, groups::Type; connectivity::Bool, check::Bool) @ GCIdentifier ~/.julia/packages/GCIdentifier/55Km6/src/group_search.jl:112 [2] get_groups_from_smiles(smiles::String, groups::Type) @ GCIdentifier ~/.julia/packages/GCIdentifier/55Km6/src/group_search.jl:111 [3] top-level scope @ ~/.julia/packages/GCIdentifier/55Km6/test/test_ext_clapeyron.jl:4 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [5] macro expansion @ ~/.julia/packages/GCIdentifier/55Km6/test/test_ext_clapeyron.jl:5 [inlined] [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [7] top-level scope @ ~/.julia/packages/GCIdentifier/55Km6/test/runtests.jl:6 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [9] macro expansion @ ~/.julia/packages/GCIdentifier/55Km6/test/runtests.jl:8 [inlined] [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [11] top-level scope @ none:6 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [14] _start() @ Base ./client.jl:577 [ Info: :short database file not found, downloading from https://raw.githubusercontent.com/CalebBell/chemicals/refs/heads/master/chemicals/Identifiers/chemical%20identifiers%20pubchem%20small.tsv [ Info: :short database file downloaded. [ Info: :short arrow file not generated, processing... [ Info: :inorganic database file not found, downloading from https://raw.githubusercontent.com/CalebBell/chemicals/refs/heads/master/chemicals/Identifiers/Inorganic%20db.tsv [ Info: :inorganic database file downloaded. [ Info: :inorganic arrow file not generated, processing... [ Info: :long database file not found, downloading from https://raw.githubusercontent.com/CalebBell/chemicals/refs/heads/master/chemicals/Identifiers/chemical%20identifiers%20pubchem%20large.tsv [ Info: :long database file downloaded. [ Info: :long arrow file not generated, processing... ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("20f20a25-4f0e-4fdf-b5d1-57303727442b"), "MakieCore") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2813  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2665  [4] macro expansion  @ ./loading.jl:2593 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2557  [7] require  @ ./loading.jl:2533 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base ./module.jl:101  [11] top-level scope  @ ~/.julia/packages/MolecularGraph/2HC5h/src/MolecularGraph.jl:213  [12] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3250  [14] top-level scope  @ stdin:5  [15] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3092  [17] include_string  @ ./loading.jl:3102 [inlined]  [18] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [19] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MolecularGraph/2HC5h/src/MolecularGraph.jl:6 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("6c89ec66-9cd8-5372-9f91-fabc50dd27fd"), "MolecularGraph") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2813  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2665  [4] macro expansion  @ ./loading.jl:2593 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2557  [7] require  @ ./loading.jl:2533 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)  @ Base ./module.jl:111  [10] top-level scope  @ ~/.julia/packages/GCIdentifier/55Km6/src/GCIdentifier.jl:13  [11] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [12] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3250  [13] top-level scope  @ stdin:5  [14] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3092  [16] include_string  @ ./loading.jl:3102 [inlined]  [17] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [18] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/GCIdentifier/55Km6/src/GCIdentifier.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("b7ea765e-cbac-4e4a-9b0d-5427cc302506"), "GCIdentifier") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2813  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2665  [4] macro expansion  @ ./loading.jl:2593 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2557  [7] require  @ ./loading.jl:2533 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using  @ ./module.jl:137 [inlined]  [11] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [12] top-level scope  @ ~/.julia/packages/GCIdentifier/55Km6/ext/GCIdentifierChemicalIdentifiersExt.jl:4  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3250  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3092  [18] include_string  @ ./loading.jl:3102 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [20] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/GCIdentifier/55Km6/ext/GCIdentifierChemicalIdentifiersExt.jl:1 in expression starting at stdin:5 3 dependencies had output during precompilation: ┌ MolecularGraph │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("20f20a25-4f0e-4fdf-b5d1-57303727442b"), "MakieCore") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:44 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2813 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2665 │ [4] macro expansion │ @ ./loading.jl:2593 [inlined] │ [5] macro expansion │ @ ./lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2557 │ [7] require │ @ ./loading.jl:2533 [inlined] │ [8] eval_import_path │ @ ./module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base ./module.jl:60 │ [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) │ @ Base ./module.jl:101 │ [11] top-level scope │ @ ~/.julia/packages/MolecularGraph/2HC5h/src/MolecularGraph.jl:213 │ [12] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3250 │ [14] top-level scope │ @ stdin:5 │ [15] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:3092 │ [17] include_string │ @ ./loading.jl:3102 [inlined] │ [18] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:342 │ [19] _start() │ @ Base ./client.jl:577 │ in expression starting at /home/pkgeval/.julia/packages/MolecularGraph/2HC5h/src/MolecularGraph.jl:6 │ in expression starting at stdin:5 └ ┌ GCIdentifier → GCIdentifierChemicalIdentifiersExt │ [Output was shown above] └ ┌ GCIdentifier │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("6c89ec66-9cd8-5372-9f91-fabc50dd27fd"), "MolecularGraph") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:44 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2813 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2665 │ [4] macro expansion │ @ ./loading.jl:2593 [inlined] │ [5] macro expansion │ @ ./lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2557 │ [7] require │ @ ./loading.jl:2533 [inlined] │ [8] eval_import_path │ @ ./module.jl:36 [inlined] │ [9] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr) │ @ Base ./module.jl:111 │ [10] top-level scope │ @ ~/.julia/packages/GCIdentifier/55Km6/src/GCIdentifier.jl:13 │ [11] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [12] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3250 │ [13] top-level scope │ @ stdin:5 │ [14] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:3092 │ [16] include_string │ @ ./loading.jl:3102 [inlined] │ [17] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:342 │ [18] _start() │ @ Base ./client.jl:577 │ in expression starting at /home/pkgeval/.julia/packages/GCIdentifier/55Km6/src/GCIdentifier.jl:1 │ in expression starting at stdin:5 └ ┌ Error: Error during loading of extension GCIdentifierChemicalIdentifiersExt of GCIdentifier, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 3 packages failed to precompile: │ │ MolecularGraph │ Failed to precompile MolecularGraph [6c89ec66-9cd8-5372-9f91-fabc50dd27fd] to "/home/pkgeval/.julia/compiled/v1.14/MolecularGraph/jl_LJw7Dk" (ProcessExited(1)). │ │ GCIdentifierChemicalIdentifiersExt │ Failed to precompile GCIdentifierChemicalIdentifiersExt [7965c817-716d-5131-b93b-078a3b5363b3] to "/home/pkgeval/.julia/compiled/v1.14/GCIdentifierChemicalIdentifiersExt/jl_LDqShU" (ProcessExited(1)). │ │ GCIdentifier │ Failed to precompile GCIdentifier [b7ea765e-cbac-4e4a-9b0d-5427cc302506] to "/home/pkgeval/.julia/compiled/v1.14/GCIdentifier/jl_eepqWQ" (ProcessExited(1)). │ └ @ Base loading.jl:1721 Extension - ChemicalIdentifiers: Error During Test at /home/pkgeval/.julia/packages/GCIdentifier/55Km6/test/test_ext_chemicalidentifiers.jl:3 Got exception outside of a @test MethodError: no method matching get_groups_from_name(::String, ::Vector{GCPair}) The function `get_groups_from_name` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ ~/.julia/packages/GCIdentifier/55Km6/test/test_ext_chemicalidentifiers.jl:4 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/GCIdentifier/55Km6/test/test_ext_chemicalidentifiers.jl:5 [inlined] [4] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [5] top-level scope @ ~/.julia/packages/GCIdentifier/55Km6/test/runtests.jl:6 [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [7] macro expansion @ ~/.julia/packages/GCIdentifier/55Km6/test/runtests.jl:9 [inlined] [8] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [9] top-level scope @ none:6 [10] eval(m::Module, e::Any) @ Core ./boot.jl:489 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [12] _start() @ Base ./client.jl:577 Test Summary: | Pass Error Total Time All tests | 58 2 60 4m55.4s UNIFAC examples | 44 44 56.6s gcPPC-SAFT Connectivity | 6 6 5.5s Missing groups functionality | 8 8 17.8s Extension - Clapeyron | 1 1 10.1s Extension - ChemicalIdentifiers | 1 1 1.6s RNG of the outermost testset: Random.Xoshiro(0x3b9b9ed9c0e5d6bb, 0xfc53c50038c2e7f0, 0x474a24b82ca469fd, 0x0191bab6968174d7, 0xa005c07167eed25d) ERROR: LoadError: Some tests did not pass: 58 passed, 0 failed, 2 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/GCIdentifier/55Km6/test/runtests.jl:5 Testing failed after 454.47s ERROR: LoadError: Package GCIdentifier errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3067 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2916 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval failed after 506.65s: package fails to precompile